Experiment set11IT012 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrate 20mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS11070 -7.0 -8.3 nitrogen regulation protein NR(I) compare
ABZR87_RS02565 -6.9 -6.7 glutamate synthase subunit beta compare
ABZR87_RS11065 -6.6 -9.1 nitrogen regulation protein NR(II) compare
ABZR87_RS02640 -6.5 -15.8 diaminopimelate decarboxylase compare
ABZR87_RS02570 -6.5 -24.1 glutamate synthase-related protein compare
ABZR87_RS02595 -6.4 -11.5 shikimate kinase compare
ABZR87_RS01810 -6.3 -5.2 glutamate 5-kinase compare
ABZR87_RS02155 -6.1 -10.2 anthranilate phosphoribosyltransferase compare
ABZR87_RS09465 -6.0 -8.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS05100 -5.9 -7.0 RNA polymerase-binding protein DksA compare
ABZR87_RS07360 -5.8 -17.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14950 -5.8 -4.9 acetolactate synthase small subunit compare
ABZR87_RS16170 -5.8 -5.6 argininosuccinate lyase compare
ABZR87_RS02145 -5.8 -4.0 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS05200 -5.7 -22.0 homoserine O-acetyltransferase compare
ABZR87_RS09450 -5.7 -11.5 prephenate dehydratase compare
ABZR87_RS04865 -5.6 -3.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS07380 -5.6 -16.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14500 -5.6 -16.8 tryptophan synthase subunit beta compare
ABZR87_RS13790 -5.5 -12.9 chorismate synthase compare
ABZR87_RS00185 -5.5 -3.8 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS11815 -5.5 -15.8 [protein-PII] uridylyltransferase compare
ABZR87_RS02140 -5.3 -20.4 anthranilate synthase component I compare
ABZR87_RS00200 -5.3 -7.1 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00285 -5.3 -3.6 acetylornithine transaminase compare
ABZR87_RS14540 -5.2 -9.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS00210 -5.2 -12.1 nitrite/sulfite reductase compare
ABZR87_RS14490 -5.2 -12.5 tryptophan synthase subunit alpha compare
ABZR87_RS14505 -5.1 -8.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS14530 -5.1 -11.4 3-isopropylmalate dehydrogenase compare
ABZR87_RS07060 -5.1 -15.9 RNA polymerase factor sigma-54 compare
ABZR87_RS22970 -5.1 -12.5 cystathionine gamma-synthase family protein compare
ABZR87_RS10085 -5.0 -3.4 Rne/Rng family ribonuclease compare
ABZR87_RS22920 -4.9 -6.7 phosphogluconate dehydratase compare
ABZR87_RS00195 -4.9 -5.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS00835 -4.8 -6.6 argininosuccinate synthase compare
ABZR87_RS13250 -4.7 -3.4 phosphoserine phosphatase SerB compare
ABZR87_RS11460 -4.7 -4.9 gephyrin-like molybdotransferase Glp compare
ABZR87_RS00190 -4.7 -14.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS08630 -4.6 -6.3 dihydroorotase compare
ABZR87_RS05170 -4.6 -3.2 acetylglutamate kinase compare
ABZR87_RS11470 -4.5 -5.3 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS02160 -4.5 -5.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02590 -4.4 -10.5 3-dehydroquinate synthase compare
ABZR87_RS16140 -4.4 -18.4 phosphoenolpyruvate carboxylase compare
ABZR87_RS18870 -4.3 -14.8 nitrite reductase large subunit NirB compare
ABZR87_RS06770 -4.3 -9.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS09030 -4.2 -5.9 NAD(P)-dependent oxidoreductase compare
ABZR87_RS11440 -4.2 -7.5 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS10070 -4.1 -3.7 gephyrin-like molybdotransferase Glp compare
ABZR87_RS10075 -4.0 -5.8 molybdenum cofactor guanylyltransferase MobA conserved
ABZR87_RS01110 -3.9 -9.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS09650 -3.9 -10.6 molybdopterin adenylyltransferase compare
ABZR87_RS14955 -3.9 -8.9 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS22915 -3.8 -12.8 glucose-6-phosphate dehydrogenase compare
ABZR87_RS18880 -3.8 -9.3 FAD-dependent oxidoreductase conserved
ABZR87_RS14535 -3.8 -7.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS07665 -3.7 -14.2 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS12790 -3.6 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS10080 -3.6 -10.2 GTP 3',8-cyclase MoaA compare
ABZR87_RS18885 -3.5 -12.2 nitrate reductase conserved
ABZR87_RS10780 -3.5 -8.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS09515 -3.5 -2.4 cysteine synthase CysM compare
ABZR87_RS22910 -3.5 -2.2 6-phosphogluconolactonase compare
ABZR87_RS09445 -3.4 -11.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS09935 -3.4 -2.3 amino acid aminotransferase compare
ABZR87_RS01675 -3.3 -3.2 carbohydrate kinase family protein compare
ABZR87_RS04785 -3.3 -10.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS07635 -3.2 -4.5 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS12785 -3.2 -6.7 endopeptidase La compare
ABZR87_RS07050 -3.1 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08015 -3.1 -9.5 cyclic pyranopterin monophosphate synthase MoaC compare
ABZR87_RS08695 -3.1 -13.2 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS23225 -2.9 -12.1 sugar ABC transporter permease compare
ABZR87_RS00205 -2.9 -2.1 DUF934 domain-containing protein compare
ABZR87_RS12795 -2.9 -7.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00435 -2.8 -10.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS23215 -2.8 -7.4 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS16180 -2.8 -5.8 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS05590 -2.8 -1.9 orotate phosphoribosyltransferase compare
ABZR87_RS00875 -2.8 -6.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS13175 -2.7 -2.5 tRNA-Leu compare
ABZR87_RS06910 -2.7 -4.3 ANTAR domain-containing protein compare
ABZR87_RS11010 -2.7 -3.0 oxidative damage protection protein compare
ABZR87_RS23220 -2.7 -9.9 xylose ABC transporter ATP-binding protein compare
ABZR87_RS07320 -2.7 -8.0 gluconokinase compare
ABZR87_RS00220 -2.6 -7.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS16960 -2.6 -6.6 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS04125 -2.6 -7.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08700 -2.5 -9.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS07625 -2.5 -3.0 Holliday junction branch migration protein RuvA compare
ABZR87_RS01645 -2.5 -3.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01605 -2.4 -8.4 shikimate dehydrogenase compare
ABZR87_RS18875 -2.4 -4.1 nitrite reductase small subunit NirD compare
ABZR87_RS13300 -2.4 -9.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01615 -2.3 -3.2 RNB domain-containing ribonuclease compare
ABZR87_RS00275 -2.3 -8.5 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS13475 -2.3 -7.8 PAS domain S-box protein compare
ABZR87_RS02480 -2.2 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS08980 -2.1 -3.1 cell envelope integrity protein TolA compare
ABZR87_RS10785 -2.1 -7.0 exodeoxyribonuclease V subunit beta compare
ABZR87_RS14115 -2.0 -4.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS05350 -2.0 -6.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS10620 -1.9 -2.7 serine O-acetyltransferase compare
ABZR87_RS01225 -1.9 -5.0 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS22690 -1.9 -3.5 XRE family transcriptional regulator compare
ABZR87_RS18865 -1.9 -8.0 MFS transporter compare
ABZR87_RS14235 -1.8 -7.6 formyltetrahydrofolate deformylase compare
ABZR87_RS23210 -1.8 -8.8 carbohydrate porin compare
ABZR87_RS08625 -1.8 -1.2 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS12345 -1.7 -1.3 dethiobiotin synthase compare
ABZR87_RS00215 -1.7 -3.7 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10240 -1.7 -2.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS08655 -1.7 -4.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS09615 -1.6 -1.9 50S ribosomal protein L19 compare
ABZR87_RS16165 -1.6 -1.4 anti-sigma factor compare
ABZR87_RS13290 -1.6 -3.8 3-ketoacyl-ACP reductase compare
ABZR87_RS01430 -1.6 -10.4 LysR family transcriptional regulator compare
ABZR87_RS17145 -1.6 -10.1 AMP nucleosidase compare
ABZR87_RS23230 -1.5 -6.1 NAD(P)-dependent oxidoreductase compare
ABZR87_RS06645 -1.5 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS16250 -1.5 -3.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS05060 -1.5 -4.9 DUF484 family protein compare
ABZR87_RS14510 -1.4 -4.3 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS05015 -1.4 -5.5 penicillin-binding protein 2 compare
ABZR87_RS13285 -1.4 -8.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS08105 -1.4 -8.3 molybdopterin-guanine dinucleotide biosynthesis protein B compare
ABZR87_RS00795 -1.4 -3.4 site-specific tyrosine recombinase XerD compare
ABZR87_RS05010 -1.4 -4.5 rod shape-determining protein RodA compare
ABZR87_RS04945 -1.4 -2.3 DUF4390 domain-containing protein compare
ABZR87_RS08970 -1.3 -4.8 protein TolQ compare
ABZR87_RS15440 -1.3 -2.1 ribonuclease G compare
ABZR87_RS20955 -1.2 -2.4 MarR family transcriptional regulator compare
ABZR87_RS16125 -1.2 -3.9 heme biosynthesis protein HemY compare
ABZR87_RS07620 -1.2 -3.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS07705 -1.2 -3.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS05085 -1.2 -8.1 lactonase family protein compare
ABZR87_RS02575 -1.2 -4.3 transposase compare
ABZR87_RS07035 -1.2 -6.2 RNase adapter RapZ compare
ABZR87_RS15705 -1.2 -3.1 UvrD-helicase domain-containing protein compare
ABZR87_RS00970 -1.2 -1.2 molecular chaperone DnaJ compare
ABZR87_RS09460 -1.2 -3.1 prephenate dehydrogenase compare
ABZR87_RS07675 -1.2 -6.4 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS13495 -1.2 -5.1 exodeoxyribonuclease III compare
ABZR87_RS09655 -1.2 -2.3 ribosome biogenesis factor YjgA compare
ABZR87_RS13050 -1.2 -1.2 GpE family phage tail protein compare
ABZR87_RS02655 -1.1 -5.2 anti-sigma factor compare
ABZR87_RS03625 -1.1 -1.5 hypothetical protein compare
ABZR87_RS21795 -1.1 -3.8 NUDIX domain-containing protein compare
ABZR87_RS14380 -1.1 -5.1 glutamate racemase compare
ABZR87_RS02850 -1.1 -2.6 elongation factor Tu compare
ABZR87_RS01245 -1.1 -3.5 Dps family protein compare
ABZR87_RS03180 -1.1 -2.6 hypothetical protein compare
ABZR87_RS11015 -1.1 -3.6 amino-acid N-acetyltransferase compare
ABZR87_RS08645 -1.1 -1.0 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS05580 -1.1 -2.2 diaminopimelate epimerase compare
ABZR87_RS10165 -1.1 -7.1 RNA polymerase sigma factor RpoE compare
ABZR87_RS14495 -1.1 -2.7 site-specific DNA-methyltransferase compare
ABZR87_RS01760 -1.1 -1.1 PP0621 family protein compare
ABZR87_RS11555 -1.0 -4.9 CysB family HTH-type transcriptional regulator compare
ABZR87_RS19095 -1.0 -2.7 gluconate:H+ symporter compare
ABZR87_RS10610 -1.0 -0.9 inositol monophosphatase family protein compare
ABZR87_RS06875 -1.0 -4.1 DNA-binding protein YbiB compare
ABZR87_RS13500 -1.0 -2.8 homoprotocatechuate degradation operon regulator HpaR compare
ABZR87_RS17270 -1.0 -1.9 hypothetical protein compare
ABZR87_RS11370 -1.0 -2.4 DUF47 domain-containing protein compare
ABZR87_RS06705 -1.0 -6.6 glutamate--cysteine ligase compare
ABZR87_RS19240 -1.0 -5.3 molybdate ABC transporter permease subunit compare
ABZR87_RS06495 -1.0 -1.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS19235 -1.0 -2.7 ATP-binding cassette domain-containing protein compare
ABZR87_RS10030 -0.9 -1.3 SDR family oxidoreductase compare
ABZR87_RS06845 -0.9 -5.5 heme o synthase compare
ABZR87_RS11585 -0.9 -2.1 gamma-glutamylcyclotransferase compare
ABZR87_RS10175 -0.9 -3.9 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS05065 -0.9 -2.7 tyrosine recombinase XerC compare
ABZR87_RS01700 -0.9 -0.9 DUF2147 domain-containing protein compare
ABZR87_RS11245 -0.9 -3.0 translational GTPase TypA compare
ABZR87_RS23295 -0.9 -0.9 hypothetical protein compare
ABZR87_RS11925 -0.9 -5.7 phosphoenolpyruvate synthase compare
ABZR87_RS06715 -0.9 -1.5 PTS sugar transporter subunit IIA compare
ABZR87_RS10170 -0.9 -3.4 RseA family anti-sigma factor compare
ABZR87_RS13795 -0.8 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR87_RS23265 -0.8 -1.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS16795 -0.8 -2.3 VOC family protein compare
ABZR87_RS05205 -0.8 -2.7 methionine biosynthesis protein MetW compare
ABZR87_RS18830 -0.8 -3.5 NIPSNAP family protein compare
ABZR87_RS09625 -0.8 -4.7 CobD/CbiB family protein compare
ABZR87_RS17565 -0.8 -1.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS06355 -0.8 -4.7 SPOR domain-containing protein compare
ABZR87_RS08985 -0.8 -4.4 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS11375 -0.8 -4.3 inorganic phosphate transporter compare
ABZR87_RS08660 -0.8 -3.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS10865 -0.8 -3.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR87_RS08990 -0.8 -2.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS22520 -0.8 -1.3 ABATE domain-containing protein compare
ABZR87_RS00100 -0.8 -1.0 hypothetical protein compare
ABZR87_RS01685 -0.8 -2.8 histone H1-like DNA-binding protein compare
ABZR87_RS02305 -0.7 -1.6 CDGSH iron-sulfur domain-containing protein compare
ABZR87_RS22330 -0.7 -2.2 hypothetical protein compare
ABZR87_RS10820 -0.7 -3.2 LysR substrate-binding domain-containing protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Sodium nitrate in Ralstonia sp. UNC404CL21Col

For nitrogen source Sodium nitrate across organisms