Experiment set11IT012 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrate 20mM

200 most detrimental genes:

  gene name fitness t score description  
ABZR87_RS06030 +1.3 2.1 AraC family transcriptional regulator compare
ABZR87_RS14890 +1.0 1.2 preprotein translocase subunit SecG compare
ABZR87_RS06455 +1.0 1.7 IclR family transcriptional regulator compare
ABZR87_RS06405 +1.0 1.2 hypothetical protein compare
ABZR87_RS21245 +1.0 1.5 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS04975 +1.0 2.9 peptide deformylase compare
ABZR87_RS01005 +0.9 3.1 RNA-binding S4 domain-containing protein compare
ABZR87_RS23180 +0.9 1.7 ABC transporter ATP-binding protein compare
ABZR87_RS01375 +0.9 6.7 two-component system hybrid sensor histidine kinase/response regulator PhcR compare
ABZR87_RS10870 +0.9 5.0 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS07730 +0.8 1.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS20370 +0.8 1.1 ABC transporter ATP-binding protein compare
ABZR87_RS01485 +0.8 2.3 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS22300 +0.8 1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS01165 +0.8 1.6 VOC family protein compare
ABZR87_RS05130 +0.8 1.0 CsbD family protein compare
ABZR87_RS12120 +0.8 1.1 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS10700 +0.8 3.6 C40 family peptidase compare
ABZR87_RS20090 +0.8 3.3 universal stress protein compare
ABZR87_RS14665 +0.8 1.2 histidine phosphatase family protein compare
ABZR87_RS11760 +0.7 0.6 membrane protein compare
ABZR87_RS21700 +0.7 1.8 hypothetical protein compare
ABZR87_RS08205 +0.7 1.4 hypothetical protein compare
ABZR87_RS14415 +0.7 0.8 hemin uptake protein HemP compare
ABZR87_RS20075 +0.7 1.7 DUF2892 domain-containing protein compare
ABZR87_RS07385 +0.7 2.2 HIT family protein compare
ABZR87_RS16155 +0.7 1.7 ferritin-like domain-containing protein compare
ABZR87_RS01560 +0.7 3.5 ribonuclease domain-containing protein compare
ABZR87_RS22205 +0.7 1.2 flagellar biosynthetic protein FliO compare
ABZR87_RS20450 +0.7 1.3 HAD family phosphatase compare
ABZR87_RS12980 +0.7 2.2 N-acetylmuramidase family protein compare
ABZR87_RS18560 +0.7 1.6 NmrA family NAD(P)-binding protein compare
ABZR87_RS19970 +0.7 2.0 hypothetical protein compare
ABZR87_RS02115 +0.7 4.2 murein transglycosylase A compare
ABZR87_RS15955 +0.6 1.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS08165 +0.6 2.4 amidase compare
ABZR87_RS16620 +0.6 1.6 hypothetical protein compare
ABZR87_RS20650 +0.6 0.9 aspartate dehydrogenase compare
ABZR87_RS08235 +0.6 1.2 hypothetical protein compare
ABZR87_RS21225 +0.6 1.4 LysR family transcriptional regulator compare
ABZR87_RS21345 +0.6 2.9 tRNA-OTHER compare
ABZR87_RS07510 +0.6 2.1 LysR family transcriptional regulator compare
ABZR87_RS12000 +0.6 2.0 DUF2182 domain-containing protein compare
ABZR87_RS08380 +0.6 2.0 RidA family protein compare
ABZR87_RS12605 +0.6 1.9 ABC transporter ATP-binding protein compare
ABZR87_RS00325 +0.6 1.5 peptidylprolyl isomerase compare
ABZR87_RS18510 +0.6 2.0 hypothetical protein compare
ABZR87_RS19370 +0.6 1.9 hypothetical protein compare
ABZR87_RS21735 +0.6 0.9 DUF2917 domain-containing protein compare
ABZR87_RS18400 +0.6 0.9 hypothetical protein compare
ABZR87_RS15290 +0.6 2.5 hypothetical protein compare
ABZR87_RS06960 +0.6 2.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
ABZR87_RS01745 +0.6 2.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS19050 +0.6 2.3 glycosyltransferase family 39 protein compare
ABZR87_RS21855 +0.6 2.9 hypothetical protein compare
ABZR87_RS08045 +0.6 2.5 zinc-finger domain-containing protein compare
ABZR87_RS23235 +0.6 3.7 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS19340 +0.6 1.7 LysR family transcriptional regulator compare
ABZR87_RS22350 +0.6 2.2 organic hydroperoxide resistance protein compare
ABZR87_RS10275 +0.6 0.9 DUF5818 domain-containing protein compare
ABZR87_RS00690 +0.6 1.9 ester cyclase compare
ABZR87_RS00765 +0.6 3.4 N-acetylmuramoyl-L-alanine amidase compare
ABZR87_RS22000 +0.6 1.3 hypothetical protein compare
ABZR87_RS11525 +0.6 1.4 molybdopterin-binding protein compare
ABZR87_RS05990 +0.5 2.0 AraC family transcriptional regulator compare
ABZR87_RS03420 +0.5 0.5 type II secretion system minor pseudopilin GspI compare
ABZR87_RS11075 +0.5 0.9 hypothetical protein compare
ABZR87_RS21125 +0.5 2.4 YciI family protein compare
ABZR87_RS16515 +0.5 1.4 helix-turn-helix domain-containing protein compare
ABZR87_RS04190 +0.5 1.6 hypothetical protein compare
ABZR87_RS13120 +0.5 2.6 helix-turn-helix transcriptional regulator compare
ABZR87_RS22055 +0.5 1.4 flagellar hook-length control protein FliK compare
ABZR87_RS18735 +0.5 2.6 sulfite exporter TauE/SafE family protein compare
ABZR87_RS18190 +0.5 0.5 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS18860 +0.5 2.1 hypothetical protein compare
ABZR87_RS10045 +0.5 1.1 lactate utilization protein C compare
ABZR87_RS17785 +0.5 2.4 AEC family transporter compare
ABZR87_RS22415 +0.5 1.5 universal stress protein compare
ABZR87_RS18140 +0.5 1.5 type III secretion system export apparatus subunit SctR compare
ABZR87_RS05140 +0.5 1.3 ATP-binding protein compare
ABZR87_RS19100 +0.5 2.3 RidA family protein compare
ABZR87_RS18280 +0.5 2.2 cysteine hydrolase family protein compare
ABZR87_RS11420 +0.5 1.3 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS01910 +0.5 1.2 peroxiredoxin compare
ABZR87_RS07850 +0.5 3.2 DEAD/DEAH box helicase compare
ABZR87_RS18075 +0.5 1.0 type III secretion system export apparatus subunit SctT compare
ABZR87_RS00050 +0.5 2.1 adenosylcobinamide-phosphate synthase CbiB compare
ABZR87_RS15015 +0.5 2.9 group II truncated hemoglobin compare
ABZR87_RS10295 +0.5 2.4 hypothetical protein compare
ABZR87_RS13815 +0.5 1.4 alpha/beta hydrolase compare
ABZR87_RS19760 +0.5 2.5 DUF2282 domain-containing protein compare
ABZR87_RS12130 +0.5 0.7 LysR substrate-binding domain-containing protein compare
ABZR87_RS13705 +0.5 0.5 integration host factor subunit alpha compare
ABZR87_RS21190 +0.5 2.0 transporter substrate-binding domain-containing protein compare
ABZR87_RS02290 +0.5 3.3 glucans biosynthesis glucosyltransferase MdoH compare
ABZR87_RS13045 +0.5 2.1 phage tail assembly protein compare
ABZR87_RS01285 +0.5 0.9 preprotein translocase subunit YajC compare
ABZR87_RS18975 +0.5 0.9 entericidin A/B family lipoprotein compare
ABZR87_RS00005 +0.5 1.1 hypothetical protein compare
ABZR87_RS13130 +0.5 2.7 ogr/Delta-like zinc finger family protein compare
ABZR87_RS13835 +0.5 2.6 DUF2069 domain-containing protein compare
ABZR87_RS04605 +0.5 1.1 DUF2795 domain-containing protein compare
ABZR87_RS10200 +0.5 2.4 DUF4845 domain-containing protein compare
ABZR87_RS17440 +0.5 0.8 (2Fe-2S)-binding protein compare
ABZR87_RS01255 +0.5 3.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS02285 +0.5 3.1 glucan biosynthesis protein G compare
ABZR87_RS22165 +0.5 1.4 flagellar export chaperone FliS compare
ABZR87_RS00665 +0.5 1.4 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS13445 +0.5 2.4 phasin family protein compare
ABZR87_RS06755 +0.5 2.4 rhodanese-like domain-containing protein compare
ABZR87_RS01370 +0.5 3.5 ATP-binding protein compare
ABZR87_RS17235 +0.5 2.3 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS10450 +0.5 1.9 alpha/beta hydrolase compare
ABZR87_RS10925 +0.5 1.8 tetratricopeptide repeat protein compare
ABZR87_RS20825 +0.5 1.1 nuclear transport factor 2 family protein compare
ABZR87_RS08915 +0.4 1.2 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS17975 +0.4 1.7 methyl-accepting chemotaxis protein compare
ABZR87_RS01500 +0.4 2.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
ABZR87_RS10910 +0.4 0.8 RodZ family helix-turn-helix domain-containing protein compare
ABZR87_RS22955 +0.4 1.7 cytochrome c oxidase subunit 3 compare
ABZR87_RS11325 +0.4 0.9 hypothetical protein compare
ABZR87_RS18315 +0.4 1.2 DUF971 domain-containing protein compare
ABZR87_RS06265 +0.4 2.0 biotin synthase BioB compare
ABZR87_RS09720 +0.4 2.3 Kdo hydroxylase family protein compare
ABZR87_RS00865 +0.4 0.8 VTT domain-containing protein compare
ABZR87_RS22995 +0.4 2.5 HAD-IIIA family hydrolase compare
ABZR87_RS19495 +0.4 2.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS19860 +0.4 1.7 hypothetical protein compare
ABZR87_RS21385 +0.4 2.2 manganese catalase family protein compare
ABZR87_RS22260 +0.4 0.9 flagellar basal body L-ring protein FlgH compare
ABZR87_RS08965 +0.4 1.5 tol-pal system-associated acyl-CoA thioesterase compare
ABZR87_RS21140 +0.4 1.7 dimethylsulfone monooxygenase SfnG compare
ABZR87_RS18415 +0.4 1.0 hypothetical protein compare
ABZR87_RS05495 +0.4 0.7 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS22190 +0.4 2.1 flagellar basal body-associated protein FliL compare
ABZR87_RS04215 +0.4 1.0 ABC transporter ATP-binding protein compare
ABZR87_RS05075 +0.4 1.2 metal-dependent hydrolase compare
ABZR87_RS04265 +0.4 2.7 phenylalanine 4-monooxygenase compare
ABZR87_RS19245 +0.4 1.8 LuxR family transcriptional regulator compare
ABZR87_RS22360 +0.4 1.8 (2Fe-2S)-binding protein compare
ABZR87_RS05645 +0.4 2.2 SDR family oxidoreductase compare
ABZR87_RS17115 +0.4 1.2 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS21070 +0.4 1.8 GTP cyclohydrolase I compare
ABZR87_RS04780 +0.4 1.8 nitronate monooxygenase family protein compare
ABZR87_RS14125 +0.4 1.3 YhbY family RNA-binding protein compare
ABZR87_RS18950 +0.4 2.2 3-keto-5-aminohexanoate cleavage protein compare
ABZR87_RS23205 +0.4 2.1 cyanase compare
ABZR87_RS11735 +0.4 0.7 chitin-binding domain-containing protein compare
ABZR87_RS01455 +0.4 1.3 SDR family oxidoreductase compare
ABZR87_RS09060 +0.4 1.9 iron export ABC transporter permease subunit FetB compare
ABZR87_RS19510 +0.4 1.7 collagen-like triple helix repeat-containing protein compare
ABZR87_RS22285 +0.4 1.3 flagellar basal body rod protein FlgC compare
ABZR87_RS01250 +0.4 1.7 hypothetical protein compare
ABZR87_RS11895 +0.4 1.6 ribonuclease HII compare
ABZR87_RS03110 +0.4 1.5 alpha/beta fold hydrolase compare
ABZR87_RS15255 +0.4 2.2 ribonuclease PH compare
ABZR87_RS00180 +0.4 1.6 NAD(P)-dependent alcohol dehydrogenase compare
ABZR87_RS01470 +0.4 1.4 L-arabinose ABC transporter permease AraH compare
ABZR87_RS08175 +0.4 1.2 GntR family transcriptional regulator compare
ABZR87_RS12885 +0.4 2.2 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS01365 +0.4 2.9 class I SAM-dependent methyltransferase PhcB compare
ABZR87_RS05180 +0.4 1.0 nucleoid occlusion factor SlmA compare
ABZR87_RS11595 +0.4 1.6 GntR family transcriptional regulator compare
ABZR87_RS19810 +0.4 1.2 ThiF family adenylyltransferase compare
ABZR87_RS22560 +0.4 1.4 glutathione S-transferase compare
ABZR87_RS09635 +0.4 0.5 ribosome small subunit-dependent GTPase A compare
ABZR87_RS08410 +0.4 1.0 hypothetical protein compare
ABZR87_RS16720 +0.4 0.5 collagen-like triple helix repeat-containing protein compare
ABZR87_RS21130 +0.4 2.0 RNA polymerase sigma factor compare
ABZR87_RS17360 +0.4 2.3 glucan biosynthesis protein compare
ABZR87_RS06370 +0.4 1.6 ferritin-like domain-containing protein compare
ABZR87_RS08800 +0.4 1.1 NADH:flavin oxidoreductase/NADH oxidase compare
ABZR87_RS00600 +0.4 0.8 hypothetical protein compare
ABZR87_RS05965 +0.4 0.8 hemerythrin domain-containing protein compare
ABZR87_RS11180 +0.4 1.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
ABZR87_RS20770 +0.4 2.2 IclR family transcriptional regulator compare
ABZR87_RS03550 +0.4 1.1 response regulator transcription factor compare
ABZR87_RS15325 +0.4 1.3 5-oxoprolinase subunit PxpA compare
ABZR87_RS12045 +0.4 1.1 ureidoglycolate lyase compare
ABZR87_RS12715 +0.4 2.2 LysR family transcriptional regulator compare
ABZR87_RS17460 +0.4 2.1 acyl-CoA dehydrogenase compare
ABZR87_RS23085 +0.4 2.0 aldehyde dehydrogenase compare
ABZR87_RS17930 +0.4 1.8 flagellar transcriptional regulator FlhD compare
ABZR87_RS21630 +0.4 1.6 mechanosensitive ion channel family protein compare
ABZR87_RS01305 +0.4 1.7 YceI family protein compare
ABZR87_RS00295 +0.4 1.1 ABC transporter ATP-binding protein compare
ABZR87_RS03335 +0.4 0.8 hypothetical protein compare
ABZR87_RS15645 +0.4 1.5 exodeoxyribonuclease VII small subunit compare
ABZR87_RS15425 +0.3 1.5 ribosome silencing factor compare
ABZR87_RS04270 +0.3 1.7 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS18935 +0.3 1.8 TauD/TfdA family dioxygenase compare
ABZR87_RS22630 +0.3 1.5 SDR family oxidoreductase compare
ABZR87_RS06290 +0.3 1.5 HAD family phosphatase compare
ABZR87_RS00760 +0.3 1.7 GNAT family N-acetyltransferase compare
ABZR87_RS17180 +0.3 1.4 class I SAM-dependent methyltransferase compare
ABZR87_RS04305 +0.3 1.6 class II aldolase/adducin family protein compare
ABZR87_RS06610 +0.3 2.8 D-alanyl-D-alanine carboxypeptidase family protein compare
ABZR87_RS15615 +0.3 1.7 GatB/YqeY domain-containing protein compare
ABZR87_RS07775 +0.3 2.0 PhoH family protein compare
ABZR87_RS20335 +0.3 2.1 aldehyde dehydrogenase (NADP(+)) compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Sodium nitrate in Ralstonia sp. UNC404CL21Col

For nitrogen source Sodium nitrate across organisms