Experiment set11IT008 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrite 5mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS05100 -5.5 -6.5 RNA polymerase-binding protein DksA compare
ABZR87_RS02160 -5.0 -7.6 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS04865 -4.3 -7.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS11070 -4.2 -10.9 nitrogen regulation protein NR(I) compare
ABZR87_RS00185 -4.2 -6.1 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS14500 -3.9 -12.3 tryptophan synthase subunit beta compare
ABZR87_RS01675 -3.8 -2.6 carbohydrate kinase family protein compare
ABZR87_RS06645 -3.8 -3.7 TlpA disulfide reductase family protein compare
ABZR87_RS02640 -3.7 -11.5 diaminopimelate decarboxylase compare
ABZR87_RS00835 -3.7 -9.9 argininosuccinate synthase compare
ABZR87_RS02145 -3.7 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS05170 -3.6 -4.9 acetylglutamate kinase compare
ABZR87_RS08630 -3.6 -6.9 dihydroorotase compare
ABZR87_RS22920 -3.6 -6.5 phosphogluconate dehydratase compare
ABZR87_RS11815 -3.6 -12.3 [protein-PII] uridylyltransferase compare
ABZR87_RS01245 -3.5 -8.2 Dps family protein compare
ABZR87_RS02570 -3.5 -21.4 glutamate synthase-related protein compare
ABZR87_RS03420 -3.5 -1.1 type II secretion system minor pseudopilin GspI compare
ABZR87_RS02565 -3.5 -5.6 glutamate synthase subunit beta compare
ABZR87_RS02155 -3.4 -6.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS09030 -3.4 -4.8 NAD(P)-dependent oxidoreductase compare
ABZR87_RS08645 -3.4 -1.5 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS17145 -3.4 -14.3 AMP nucleosidase compare
ABZR87_RS09445 -3.3 -10.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS05350 -3.3 -7.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS07060 -3.3 -13.8 RNA polymerase factor sigma-54 compare
ABZR87_RS14490 -3.3 -10.4 tryptophan synthase subunit alpha compare
ABZR87_RS09465 -3.2 -8.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14955 -3.2 -9.4 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00210 -3.2 -9.6 nitrite/sulfite reductase compare
ABZR87_RS13175 -3.1 -3.6 tRNA-Leu compare
ABZR87_RS07360 -3.1 -13.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14540 -3.1 -7.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS07380 -3.1 -15.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS13790 -3.1 -9.3 chorismate synthase compare
ABZR87_RS22970 -3.0 -10.0 cystathionine gamma-synthase family protein compare
ABZR87_RS16170 -3.0 -4.9 argininosuccinate lyase compare
ABZR87_RS13645 -2.9 -1.6 hypothetical protein compare
ABZR87_RS07050 -2.9 -1.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS01645 -2.9 -5.7 type II 3-dehydroquinate dehydratase compare
ABZR87_RS04975 -2.9 -2.9 peptide deformylase compare
ABZR87_RS14530 -2.9 -8.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS11440 -2.9 -10.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09450 -2.8 -7.1 prephenate dehydratase compare
ABZR87_RS00195 -2.8 -3.6 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS06495 -2.8 -2.8 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS00285 -2.8 -4.4 acetylornithine transaminase compare
ABZR87_RS01085 -2.8 -5.0 rhombosortase compare
ABZR87_RS02140 -2.8 -14.2 anthranilate synthase component I compare
ABZR87_RS00275 -2.8 -7.7 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS14505 -2.7 -4.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS16140 -2.6 -12.8 phosphoenolpyruvate carboxylase compare
ABZR87_RS09935 -2.6 -4.6 amino acid aminotransferase compare
ABZR87_RS05200 -2.6 -13.5 homoserine O-acetyltransferase compare
ABZR87_RS02595 -2.5 -11.0 shikimate kinase compare
ABZR87_RS01110 -2.5 -8.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14535 -2.5 -4.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS06910 -2.5 -2.9 ANTAR domain-containing protein compare
ABZR87_RS00190 -2.5 -8.2 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS22915 -2.5 -9.7 glucose-6-phosphate dehydrogenase compare
ABZR87_RS10780 -2.4 -5.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS16960 -2.4 -4.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS05590 -2.4 -2.3 orotate phosphoribosyltransferase compare
ABZR87_RS11065 -2.3 -5.6 nitrogen regulation protein NR(II) compare
ABZR87_RS16250 -2.3 -4.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS04125 -2.3 -7.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS10785 -2.3 -6.4 exodeoxyribonuclease V subunit beta compare
ABZR87_RS15495 -2.3 -10.2 O-antigen ligase family protein compare
ABZR87_RS21795 -2.2 -5.8 NUDIX domain-containing protein compare
ABZR87_RS00200 -2.2 -3.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS22300 -2.2 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS02590 -2.2 -8.1 3-dehydroquinate synthase compare
ABZR87_RS01605 -2.2 -7.7 shikimate dehydrogenase compare
ABZR87_RS00220 -2.2 -8.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS03450 -2.2 -11.0 type II secretion system secretin GspD compare
ABZR87_RS03425 -2.2 -6.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS12790 -2.1 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00205 -2.1 -3.0 DUF934 domain-containing protein compare
ABZR87_RS15480 -2.1 -8.4 glycosyltransferase family 25 protein compare
ABZR87_RS15500 -2.1 -6.0 glycosyltransferase compare
ABZR87_RS18870 -2.0 -8.5 nitrite reductase large subunit NirB compare
ABZR87_RS03435 -2.0 -7.2 type II secretion system protein GspL compare
ABZR87_RS07625 -2.0 -3.5 Holliday junction branch migration protein RuvA compare
ABZR87_RS18865 -2.0 -9.9 MFS transporter compare
ABZR87_RS03430 -2.0 -11.2 type II secretion system minor pseudopilin GspK compare
ABZR87_RS00215 -2.0 -5.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS13250 -2.0 -2.9 phosphoserine phosphatase SerB compare
ABZR87_RS07470 -2.0 -8.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS03455 -1.9 -8.6 type II secretion system ATPase GspE compare
ABZR87_RS08700 -1.9 -8.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS03440 -1.9 -4.3 type II secretion system protein GspM compare
ABZR87_RS07665 -1.9 -7.9 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS08695 -1.8 -9.3 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS08725 -1.8 -13.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS05965 -1.8 -1.8 hemerythrin domain-containing protein compare
ABZR87_RS07635 -1.8 -2.3 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08625 -1.8 -1.2 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS01810 -1.8 -4.2 glutamate 5-kinase compare
ABZR87_RS09515 -1.8 -1.6 cysteine synthase CysM compare
ABZR87_RS08730 -1.7 -13.9 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR87_RS11010 -1.7 -2.6 oxidative damage protection protein compare
ABZR87_RS08710 -1.7 -10.0 sugar transferase compare
ABZR87_RS21245 -1.7 -1.2 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS00435 -1.7 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS11245 -1.7 -6.0 translational GTPase TypA compare
ABZR87_RS15810 -1.6 -2.7 hypothetical protein compare
ABZR87_RS03460 -1.6 -8.0 type II secretion system inner membrane protein GspF compare
ABZR87_RS01980 -1.6 -3.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS02480 -1.6 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS08705 -1.6 -12.8 glycosyltransferase family 4 protein compare
ABZR87_RS17310 -1.6 -5.1 PadR family transcriptional regulator compare
ABZR87_RS10085 -1.6 -1.3 Rne/Rng family ribonuclease compare
ABZR87_RS08715 -1.5 -10.3 ATP-grasp domain-containing protein compare
ABZR87_RS09635 -1.5 -1.6 ribosome small subunit-dependent GTPase A compare
ABZR87_RS05065 -1.5 -4.0 tyrosine recombinase XerC compare
ABZR87_RS10980 -1.5 -1.2 tRNA-Leu compare
ABZR87_RS10240 -1.5 -2.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS08655 -1.5 -3.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS08690 -1.5 -11.1 polysaccharide biosynthesis protein compare
ABZR87_RS03445 -1.4 -4.4 type II secretion system protein N compare
ABZR87_RS15490 -1.4 -7.5 glycosyltransferase family 2 protein compare
ABZR87_RS03410 -1.4 -3.6 type II secretion system major pseudopilin GspG compare
ABZR87_RS08685 -1.4 -10.1 hypothetical protein compare
ABZR87_RS15440 -1.4 -2.4 ribonuclease G compare
ABZR87_RS08070 -1.4 -1.3 pyruvate kinase compare
ABZR87_RS14950 -1.4 -2.0 acetolactate synthase small subunit compare
ABZR87_RS18875 -1.4 -2.3 nitrite reductase small subunit NirD compare
ABZR87_RS19095 -1.4 -4.4 gluconate:H+ symporter compare
ABZR87_RS02655 -1.4 -6.4 anti-sigma factor compare
ABZR87_RS23220 -1.4 -6.8 xylose ABC transporter ATP-binding protein compare
ABZR87_RS10165 -1.4 -7.4 RNA polymerase sigma factor RpoE compare
ABZR87_RS12795 -1.4 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS21095 -1.4 -0.8 TRAP transporter small permease compare
ABZR87_RS08740 -1.3 -9.0 hypothetical protein compare
ABZR87_RS21285 -1.3 -2.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14115 -1.2 -2.7 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS23225 -1.2 -5.6 sugar ABC transporter permease compare
ABZR87_RS08720 -1.2 -6.3 HAD family hydrolase compare
ABZR87_RS13290 -1.2 -4.1 3-ketoacyl-ACP reductase compare
ABZR87_RS22330 -1.2 -3.1 hypothetical protein compare
ABZR87_RS13475 -1.2 -4.4 PAS domain S-box protein compare
ABZR87_RS15485 -1.2 -4.0 glycosyltransferase family 2 protein compare
ABZR87_RS00665 -1.2 -2.6 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS12785 -1.2 -4.0 endopeptidase La compare
ABZR87_RS23215 -1.2 -5.6 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS01615 -1.2 -1.8 RNB domain-containing ribonuclease compare
ABZR87_RS02850 -1.2 -2.1 elongation factor Tu compare
ABZR87_RS00230 -1.1 -1.8 NAD(P)-dependent oxidoreductase compare
ABZR87_RS20880 -1.1 -4.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS15320 -1.1 -2.0 DUF969 domain-containing protein compare
ABZR87_RS07620 -1.1 -2.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS16125 -1.1 -3.1 heme biosynthesis protein HemY compare
ABZR87_RS04860 -1.1 -2.6 phage holin family protein compare
ABZR87_RS15505 -1.1 -1.0 DNA polymerase III subunit alpha compare
ABZR87_RS04785 -1.1 -4.8 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS07320 -1.1 -4.2 gluconokinase compare
ABZR87_RS13300 -1.1 -4.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01075 -1.1 -5.3 MprA protease, GlyGly-CTERM protein-sorting domain-containing form compare
ABZR87_RS08040 -1.1 -5.1 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS18190 -1.1 -2.0 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS12070 -1.0 -1.2 porin compare
ABZR87_RS07655 -1.0 -4.5 FAD-dependent oxidoreductase compare
ABZR87_RS10040 -1.0 -4.4 nicotinate phosphoribosyltransferase compare
ABZR87_RS15065 -1.0 -2.0 TMEM165/GDT1 family protein compare
ABZR87_RS10620 -1.0 -1.5 serine O-acetyltransferase compare
ABZR87_RS12150 -1.0 -2.4 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS23315 -1.0 -1.5 MarR family transcriptional regulator compare
ABZR87_RS02575 -1.0 -3.9 transposase compare
ABZR87_RS23210 -1.0 -5.1 carbohydrate porin compare
ABZR87_RS14965 -0.9 -2.3 DUF3619 family protein compare
ABZR87_RS14380 -0.9 -2.9 glutamate racemase compare
ABZR87_RS11000 -0.9 -4.4 transaldolase compare
ABZR87_RS03810 -0.9 -3.4 YraN family protein compare
ABZR87_RS12665 -0.9 -1.3 ABC transporter ATP-binding protein compare
ABZR87_RS07705 -0.9 -2.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS15680 -0.9 -5.2 DNA polymerase I compare
ABZR87_RS07035 -0.9 -4.6 RNase adapter RapZ compare
ABZR87_RS15815 -0.9 -2.7 ABC transporter substrate-binding protein compare
ABZR87_RS06405 -0.9 -0.8 hypothetical protein compare
ABZR87_RS00875 -0.9 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS10465 -0.9 -3.6 DUF1330 domain-containing protein compare
ABZR87_RS11170 -0.9 -0.9 FixH family protein compare
ABZR87_RS00020 -0.9 -1.6 DUF3460 family protein compare
ABZR87_RS17865 -0.9 -1.0 cation:proton antiporter compare
ABZR87_RS22000 -0.9 -1.6 hypothetical protein compare
ABZR87_RS16860 -0.8 -0.7 response regulator compare
ABZR87_RS20875 -0.8 -4.1 LysR family transcriptional regulator compare
ABZR87_RS14060 -0.8 -5.6 exopolyphosphatase compare
ABZR87_RS12330 -0.8 -1.1 hypothetical protein compare
ABZR87_RS06705 -0.8 -5.4 glutamate--cysteine ligase compare
ABZR87_RS13995 -0.8 -3.4 aldo/keto reductase compare
ABZR87_RS18095 -0.8 -1.9 hypothetical protein compare
ABZR87_RS23035 -0.8 -1.6 PIG-L family deacetylase compare
ABZR87_RS07965 -0.8 -2.6 recombinase RecA compare
ABZR87_RS19345 -0.8 -2.1 glutaminase compare
ABZR87_RS13150 -0.8 -2.0 hypothetical protein compare
ABZR87_RS16180 -0.8 -2.2 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS11990 -0.8 -1.3 hypothetical protein compare
ABZR87_RS06825 -0.8 -0.6 twin transmembrane helix small protein compare
ABZR87_RS12965 -0.8 -1.0 tail protein X compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in nitrogen source experiments

For nitrogen source Sodium nitrite across organisms