Experiment set11IT008 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrite 5mM

200 most detrimental genes:

  gene name fitness t score description  
ABZR87_RS01285 +1.7 3.2 preprotein translocase subunit YajC compare
ABZR87_RS10550 +1.5 1.7 outer membrane protein assembly factor BamC compare
ABZR87_RS12120 +1.4 0.9 isocitrate lyase/phosphoenolpyruvate mutase family protein compare
ABZR87_RS10700 +1.4 7.0 C40 family peptidase compare
ABZR87_RS18560 +1.3 4.7 NmrA family NAD(P)-binding protein compare
ABZR87_RS11760 +1.2 1.0 membrane protein compare
ABZR87_RS04565 +1.1 2.8 PaaI family thioesterase compare
ABZR87_RS14415 +1.1 1.1 hemin uptake protein HemP compare
ABZR87_RS01375 +1.1 7.7 two-component system hybrid sensor histidine kinase/response regulator PhcR compare
ABZR87_RS01685 +1.0 4.9 histone H1-like DNA-binding protein compare
ABZR87_RS21225 +1.0 1.5 LysR family transcriptional regulator compare
ABZR87_RS11905 +1.0 3.7 M24 family metallopeptidase compare
ABZR87_RS10275 +1.0 2.2 DUF5818 domain-containing protein compare
ABZR87_RS06595 +1.0 2.6 DUF2917 domain-containing protein compare
ABZR87_RS14760 +0.9 4.4 urea ABC transporter ATP-binding protein UrtD compare
ABZR87_RS16845 +0.9 1.1 hypothetical protein compare
ABZR87_RS14765 +0.9 4.3 urea ABC transporter permease subunit UrtC compare
ABZR87_RS02290 +0.9 6.2 glucans biosynthesis glucosyltransferase MdoH compare
ABZR87_RS05025 +0.9 1.9 rod shape-determining protein MreC compare
ABZR87_RS02285 +0.9 5.2 glucan biosynthesis protein G compare
ABZR87_RS23295 +0.9 1.4 hypothetical protein compare
ABZR87_RS11325 +0.9 1.7 hypothetical protein compare
ABZR87_RS04105 +0.9 2.9 ATP synthase subunit I compare
ABZR87_RS02630 +0.8 3.5 iron donor protein CyaY compare
ABZR87_RS00340 +0.8 2.9 50S ribosomal protein L33 compare
ABZR87_RS15715 +0.8 3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS01765 +0.8 2.4 cytochrome c biogenesis protein CcsA compare
ABZR87_RS04895 +0.8 4.3 glutathione S-transferase family protein compare
ABZR87_RS07510 +0.8 2.7 LysR family transcriptional regulator compare
ABZR87_RS14625 +0.8 1.9 hypothetical protein compare
ABZR87_RS23180 +0.8 1.5 ABC transporter ATP-binding protein compare
ABZR87_RS19370 +0.8 2.4 hypothetical protein compare
ABZR87_RS20450 +0.8 1.5 HAD family phosphatase compare
ABZR87_RS14770 +0.8 3.9 urea ABC transporter permease subunit UrtB compare
ABZR87_RS06755 +0.8 3.5 rhodanese-like domain-containing protein compare
ABZR87_RS05010 +0.8 2.4 rod shape-determining protein RodA compare
ABZR87_RS13420 +0.8 5.0 D-alanyl-D-alanine endopeptidase compare
ABZR87_RS22205 +0.7 3.0 flagellar biosynthetic protein FliO compare
ABZR87_RS17360 +0.7 4.7 glucan biosynthesis protein compare
ABZR87_RS23055 +0.7 2.3 YetF domain-containing protein compare
ABZR87_RS09615 +0.7 1.1 50S ribosomal protein L19 compare
ABZR87_RS08760 +0.7 3.6 META domain-containing protein compare
ABZR87_RS20555 +0.7 3.6 helix-turn-helix transcriptional regulator compare
ABZR87_RS16270 +0.7 1.3 cold-shock protein compare
ABZR87_RS14775 +0.7 4.9 urea ABC transporter substrate-binding protein compare
ABZR87_RS16885 +0.7 1.3 hypothetical protein compare
ABZR87_RS18315 +0.7 1.3 DUF971 domain-containing protein compare
ABZR87_RS09960 +0.7 3.7 ABC transporter permease compare
ABZR87_RS20130 +0.7 2.9 hypothetical protein compare
ABZR87_RS07880 +0.7 1.8 hypothetical protein compare
ABZR87_RS10870 +0.7 3.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS20155 +0.7 2.1 type VI secretion system-associated protein TagF compare
ABZR87_RS11330 +0.7 2.2 transcriptional repressor LexA compare
ABZR87_RS10075 +0.7 2.9 molybdenum cofactor guanylyltransferase MobA compare
ABZR87_RS01165 +0.7 0.9 VOC family protein compare
ABZR87_RS14375 +0.7 1.7 fumarate hydratase compare
ABZR87_RS20650 +0.7 1.2 aspartate dehydrogenase compare
ABZR87_RS14890 +0.7 0.7 preprotein translocase subunit SecG compare
ABZR87_RS10845 +0.7 3.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS17930 +0.7 3.7 flagellar transcriptional regulator FlhD compare
ABZR87_RS13120 +0.7 3.2 helix-turn-helix transcriptional regulator compare
ABZR87_RS13445 +0.7 2.7 phasin family protein compare
ABZR87_RS07530 +0.7 4.8 glutamate/aspartate ABC transporter permease GltK compare
ABZR87_RS14960 +0.7 2.6 RNA polymerase sigma factor compare
ABZR87_RS19565 +0.7 3.5 DUF3613 domain-containing protein compare
ABZR87_RS10070 +0.7 1.4 gephyrin-like molybdotransferase Glp compare
ABZR87_RS10930 +0.7 0.9 outer membrane protein assembly factor BamB compare
ABZR87_RS21615 +0.7 2.5 response regulator compare
ABZR87_RS21375 +0.6 1.6 DUF6566 family protein compare
ABZR87_RS22285 +0.6 2.8 flagellar basal body rod protein FlgC compare
ABZR87_RS22370 +0.6 1.0 four-helix bundle copper-binding protein compare
ABZR87_RS11980 +0.6 0.7 cold-shock protein compare
ABZR87_RS14595 +0.6 2.4 hypothetical protein compare
ABZR87_RS14275 +0.6 1.6 NAD(P)/FAD-dependent oxidoreductase compare
ABZR87_RS00005 +0.6 1.5 hypothetical protein compare
ABZR87_RS00445 +0.6 2.0 cold-shock protein compare
ABZR87_RS16340 +0.6 1.3 ABC transporter ATP-binding protein compare
ABZR87_RS19050 +0.6 2.3 glycosyltransferase family 39 protein compare
ABZR87_RS06920 +0.6 2.2 maleylacetoacetate isomerase compare
ABZR87_RS20730 +0.6 1.0 hypothetical protein compare
ABZR87_RS15110 +0.6 4.2 NADP-dependent malic enzyme compare
ABZR87_RS13375 +0.6 2.5 NUDIX hydrolase compare
ABZR87_RS10615 +0.6 2.2 RNA methyltransferase compare
ABZR87_RS19495 +0.6 3.4 helix-turn-helix transcriptional regulator compare
ABZR87_RS04120 +0.6 1.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR87_RS11460 +0.6 2.4 gephyrin-like molybdotransferase Glp compare
ABZR87_RS04945 +0.6 1.2 DUF4390 domain-containing protein compare
ABZR87_RS14665 +0.6 0.8 histidine phosphatase family protein compare
ABZR87_RS10950 +0.6 3.6 FtsH protease activity modulator HflK compare
ABZR87_RS17620 +0.6 1.7 LysR family transcriptional regulator compare
ABZR87_RS05495 +0.6 0.8 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS10285 +0.6 3.6 FecR domain-containing protein compare
ABZR87_RS16225 +0.6 1.4 twin-arginine translocation signal domain-containing protein compare
ABZR87_RS05570 +0.6 2.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS20370 +0.6 0.7 ABC transporter ATP-binding protein compare
ABZR87_RS01470 +0.6 2.4 L-arabinose ABC transporter permease AraH compare
ABZR87_RS14135 +0.6 2.2 transcription elongation factor GreA compare
ABZR87_RS07815 +0.6 0.8 MaoC/PaaZ C-terminal domain-containing protein compare
ABZR87_RS05140 +0.6 1.1 ATP-binding protein compare
ABZR87_RS05305 +0.6 3.8 TetR family transcriptional regulator compare
ABZR87_RS14780 +0.6 1.5 MaoC family dehydratase compare
ABZR87_RS12980 +0.5 1.6 N-acetylmuramidase family protein compare
ABZR87_RS01070 +0.5 1.6 hypothetical protein compare
ABZR87_RS15305 +0.5 1.1 pyroglutamyl-peptidase I compare
ABZR87_RS22060 +0.5 2.2 flagellar export protein FliJ compare
ABZR87_RS01370 +0.5 3.9 ATP-binding protein compare
ABZR87_RS01005 +0.5 1.2 RNA-binding S4 domain-containing protein compare
ABZR87_RS22055 +0.5 1.7 flagellar hook-length control protein FliK compare
ABZR87_RS21115 +0.5 2.7 NAD(P)-dependent alcohol dehydrogenase compare
ABZR87_RS08045 +0.5 1.5 zinc-finger domain-containing protein compare
ABZR87_RS19670 +0.5 1.4 cold-shock protein compare
ABZR87_RS17970 +0.5 1.2 methyl-accepting chemotaxis protein compare
ABZR87_RS01455 +0.5 1.8 SDR family oxidoreductase compare
ABZR87_RS17695 +0.5 1.5 helix-turn-helix transcriptional regulator compare
ABZR87_RS06600 +0.5 3.5 transcriptional regulator GcvA compare
ABZR87_RS04725 +0.5 0.6 universal stress protein compare
ABZR87_RS22250 +0.5 3.1 flagellar assembly peptidoglycan hydrolase FlgJ compare
ABZR87_RS22415 +0.5 1.0 universal stress protein compare
ABZR87_RS14205 +0.5 1.2 DUF1488 domain-containing protein compare
ABZR87_RS19520 +0.5 3.8 prepilin peptidase compare
ABZR87_RS08320 +0.5 2.2 hypothetical protein compare
ABZR87_RS07535 +0.5 1.8 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS21990 +0.5 1.5 hypothetical protein compare
ABZR87_RS19505 +0.5 2.4 collagen-like triple helix repeat-containing protein compare
ABZR87_RS22940 +0.5 2.1 hypothetical protein compare
ABZR87_RS06300 +0.5 1.2 SDR family oxidoreductase compare
ABZR87_RS01565 +0.5 3.4 NADP-dependent malic enzyme compare
ABZR87_RS22105 +0.5 1.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS01365 +0.5 3.5 class I SAM-dependent methyltransferase PhcB compare
ABZR87_RS04970 +0.5 3.9 glycosyltransferase family 39 protein compare
ABZR87_RS06960 +0.5 2.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
ABZR87_RS21175 +0.5 1.6 acyl-CoA dehydrogenase family protein compare
ABZR87_RS18700 +0.5 1.7 DUF1272 domain-containing protein compare
ABZR87_RS13850 +0.5 1.9 hypothetical protein compare
ABZR87_RS18325 +0.5 0.8 ferredoxin family protein compare
ABZR87_RS22180 +0.5 1.1 response regulator transcription factor compare
ABZR87_RS16720 +0.5 0.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS19580 +0.5 3.3 DUF2968 domain-containing protein compare
ABZR87_RS01690 +0.5 0.5 collagen-like triple helix repeat-containing protein compare
ABZR87_RS21735 +0.5 0.7 DUF2917 domain-containing protein compare
ABZR87_RS20090 +0.5 1.2 universal stress protein compare
ABZR87_RS18365 +0.5 1.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase compare
ABZR87_RS00715 +0.5 2.2 MotA/TolQ/ExbB proton channel family protein compare
ABZR87_RS02415 +0.5 1.6 response regulator compare
ABZR87_RS06545 +0.5 1.8 hypothetical protein compare
ABZR87_RS12130 +0.5 0.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS15050 +0.5 2.6 xanthine dehydrogenase accessory protein XdhC compare
ABZR87_RS15405 +0.5 1.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS22325 +0.5 1.1 H-NS histone family protein compare
ABZR87_RS15290 +0.5 1.1 hypothetical protein compare
ABZR87_RS11075 +0.5 1.0 hypothetical protein compare
ABZR87_RS21345 +0.5 1.4 tRNA-OTHER compare
ABZR87_RS12735 +0.5 2.8 winged helix DNA-binding protein compare
ABZR87_RS19500 +0.5 3.9 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
ABZR87_RS21800 +0.5 2.0 SPFH domain-containing protein compare
ABZR87_RS01660 +0.5 1.4 50S ribosomal protein L11 methyltransferase compare
ABZR87_RS08965 +0.5 1.2 tol-pal system-associated acyl-CoA thioesterase compare
ABZR87_RS10955 +0.5 2.2 protease modulator HflC compare
ABZR87_RS07520 +0.5 2.0 glutamate/aspartate ABC transporter substrate-binding protein compare
ABZR87_RS01510 +0.5 1.1 YidB family protein compare
ABZR87_RS21560 +0.4 1.6 Lrp/AsnC family transcriptional regulator compare
ABZR87_RS00625 +0.4 1.0 hypothetical protein compare
ABZR87_RS07395 +0.4 1.1 DUF971 domain-containing protein compare
ABZR87_RS06370 +0.4 1.9 ferritin-like domain-containing protein compare
ABZR87_RS23085 +0.4 2.4 aldehyde dehydrogenase compare
ABZR87_RS09145 +0.4 2.8 cyclopropane-fatty-acyl-phospholipid synthase family protein compare
ABZR87_RS08400 +0.4 1.2 glycine zipper 2TM domain-containing protein compare
ABZR87_RS13385 +0.4 3.2 arginyltransferase compare
ABZR87_RS13400 +0.4 0.5 hypothetical protein compare
ABZR87_RS19760 +0.4 1.4 DUF2282 domain-containing protein compare
ABZR87_RS13815 +0.4 1.0 alpha/beta hydrolase compare
ABZR87_RS19545 +0.4 2.4 CpaF family protein compare
ABZR87_RS22870 +0.4 1.6 hypothetical protein compare
ABZR87_RS11490 +0.4 2.9 sulfate ABC transporter substrate-binding protein compare
ABZR87_RS12355 +0.4 1.9 hypothetical protein compare
ABZR87_RS01430 +0.4 3.4 LysR family transcriptional regulator compare
ABZR87_RS15525 +0.4 2.5 pirin family protein compare
ABZR87_RS20950 +0.4 2.0 magnesium and cobalt transport protein CorA compare
ABZR87_RS17405 +0.4 1.2 nucleobase:cation symporter-2 family protein compare
ABZR87_RS03705 +0.4 0.7 DUF2892 domain-containing protein compare
ABZR87_RS09650 +0.4 2.3 molybdopterin adenylyltransferase compare
ABZR87_RS10280 +0.4 2.3 response regulator transcription factor compare
ABZR87_RS05970 +0.4 1.6 PRC-barrel domain-containing protein compare
ABZR87_RS06475 +0.4 1.2 PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein compare
ABZR87_RS08440 +0.4 0.9 hypothetical protein compare
ABZR87_RS21855 +0.4 1.5 hypothetical protein compare
ABZR87_RS22875 +0.4 1.4 chorismate mutase compare
ABZR87_RS20640 +0.4 2.4 VOC family protein compare
ABZR87_RS15275 +0.4 0.7 hypothetical protein compare
ABZR87_RS19865 +0.4 1.6 c-type cytochrome compare
ABZR87_RS18025 +0.4 2.6 flagellar biosynthesis protein FlhA compare
ABZR87_RS14455 +0.4 0.9 nodulation factor ABC transporter ATP-binding protein NodI compare
ABZR87_RS19550 +0.4 2.0 type II secretion system F family protein compare
ABZR87_RS06770 +0.4 1.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS18320 +0.4 0.9 HEAT repeat domain-containing protein compare
ABZR87_RS17850 +0.4 1.2 2-hydroxychromene-2-carboxylate isomerase compare
ABZR87_RS20505 +0.4 1.3 hypothetical protein compare
ABZR87_RS02885 +0.4 2.0 class I SAM-dependent methyltransferase compare
ABZR87_RS22620 +0.4 1.6 UdgX family uracil-DNA binding protein compare
ABZR87_RS00330 +0.4 2.2 DNA repair protein RadC compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in nitrogen source experiments

For nitrogen source Sodium nitrite across organisms