Experiment set11IT007 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrate 5mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02155 -7.3 -5.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS02565 -7.3 -5.0 glutamate synthase subunit beta compare
ABZR87_RS09465 -6.8 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14530 -6.8 -4.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS01810 -6.2 -4.6 glutamate 5-kinase compare
ABZR87_RS02570 -6.1 -26.3 glutamate synthase-related protein compare
ABZR87_RS14500 -6.1 -13.7 tryptophan synthase subunit beta compare
ABZR87_RS11815 -6.0 -14.5 [protein-PII] uridylyltransferase compare
ABZR87_RS13790 -5.9 -10.7 chorismate synthase compare
ABZR87_RS22920 -5.9 -4.1 phosphogluconate dehydratase compare
ABZR87_RS11065 -5.8 -9.8 nitrogen regulation protein NR(II) compare
ABZR87_RS02640 -5.8 -13.9 diaminopimelate decarboxylase compare
ABZR87_RS07360 -5.7 -16.7 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14950 -5.7 -4.6 acetolactate synthase small subunit compare
ABZR87_RS07380 -5.7 -14.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS01110 -5.7 -11.5 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14535 -5.6 -6.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02145 -5.6 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02140 -5.5 -22.7 anthranilate synthase component I compare
ABZR87_RS05200 -5.4 -16.6 homoserine O-acetyltransferase compare
ABZR87_RS11070 -5.2 -9.0 nitrogen regulation protein NR(I) compare
ABZR87_RS22970 -5.2 -11.6 cystathionine gamma-synthase family protein compare
ABZR87_RS00285 -5.1 -3.5 acetylornithine transaminase compare
ABZR87_RS07060 -5.1 -17.2 RNA polymerase factor sigma-54 compare
ABZR87_RS00200 -5.0 -5.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS02160 -5.0 -5.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00835 -5.0 -3.5 argininosuccinate synthase compare
ABZR87_RS14490 -5.0 -12.8 tryptophan synthase subunit alpha compare
ABZR87_RS05350 -5.0 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00210 -4.9 -10.7 nitrite/sulfite reductase compare
ABZR87_RS00195 -4.9 -5.8 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS16170 -4.7 -6.8 argininosuccinate lyase compare
ABZR87_RS04865 -4.7 -7.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02595 -4.7 -10.7 shikimate kinase compare
ABZR87_RS09450 -4.6 -7.6 prephenate dehydratase compare
ABZR87_RS06910 -4.6 -4.8 ANTAR domain-containing protein compare
ABZR87_RS06030 -4.6 -1.3 AraC family transcriptional regulator compare
ABZR87_RS16140 -4.6 -15.0 phosphoenolpyruvate carboxylase compare
ABZR87_RS14540 -4.4 -6.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS13175 -4.3 -3.2 tRNA-Leu compare
ABZR87_RS00190 -4.3 -11.1 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS07665 -4.3 -12.2 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS14955 -4.3 -5.9 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS02590 -4.2 -9.5 3-dehydroquinate synthase compare
ABZR87_RS10075 -4.1 -5.7 molybdenum cofactor guanylyltransferase MobA conserved
ABZR87_RS14505 -4.0 -4.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS00970 -4.0 -2.5 molecular chaperone DnaJ compare
ABZR87_RS18885 -3.9 -8.6 nitrate reductase conserved
ABZR87_RS08630 -3.8 -6.6 dihydroorotase compare
ABZR87_RS10085 -3.8 -2.9 Rne/Rng family ribonuclease compare
ABZR87_RS05170 -3.7 -5.0 acetylglutamate kinase compare
ABZR87_RS10980 -3.7 -1.4 tRNA-Leu compare
ABZR87_RS09445 -3.7 -11.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS00185 -3.6 -4.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS23220 -3.6 -9.0 xylose ABC transporter ATP-binding protein compare
ABZR87_RS11440 -3.6 -5.7 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS18880 -3.5 -7.5 FAD-dependent oxidoreductase conserved
ABZR87_RS12785 -3.5 -6.2 endopeptidase La compare
ABZR87_RS01225 -3.4 -4.4 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS09515 -3.4 -2.1 cysteine synthase CysM compare
ABZR87_RS11470 -3.4 -5.8 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS12790 -3.4 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS09935 -3.3 -2.3 amino acid aminotransferase compare
ABZR87_RS05100 -3.3 -5.4 RNA polymerase-binding protein DksA compare
ABZR87_RS01555 -3.2 -1.7 barstar family protein compare
ABZR87_RS13300 -3.2 -11.1 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS16180 -3.1 -5.5 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS22915 -3.1 -8.6 glucose-6-phosphate dehydrogenase compare
ABZR87_RS06770 -3.1 -5.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS20690 -3.0 -2.5 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS07635 -3.0 -3.9 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS22690 -3.0 -2.9 XRE family transcriptional regulator compare
ABZR87_RS00205 -3.0 -2.2 DUF934 domain-containing protein compare
ABZR87_RS04125 -2.9 -8.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS10240 -2.9 -2.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS08695 -2.9 -12.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS06495 -2.9 -2.3 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS00435 -2.8 -9.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS18870 -2.8 -8.5 nitrite reductase large subunit NirB compare
ABZR87_RS10610 -2.8 -1.4 inositol monophosphatase family protein compare
ABZR87_RS23225 -2.8 -5.2 sugar ABC transporter permease compare
ABZR87_RS02480 -2.7 -1.9 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS13250 -2.7 -1.6 phosphoserine phosphatase SerB compare
ABZR87_RS00220 -2.7 -6.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS13475 -2.7 -7.8 PAS domain S-box protein compare
ABZR87_RS10080 -2.6 -7.6 GTP 3',8-cyclase MoaA compare
ABZR87_RS05065 -2.6 -4.7 tyrosine recombinase XerC compare
ABZR87_RS04785 -2.6 -7.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS01615 -2.5 -2.5 RNB domain-containing ribonuclease compare
ABZR87_RS12795 -2.5 -6.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS09615 -2.5 -1.8 50S ribosomal protein L19 compare
ABZR87_RS18875 -2.4 -5.0 nitrite reductase small subunit NirD compare
ABZR87_RS05130 -2.4 -0.9 CsbD family protein compare
ABZR87_RS08015 -2.4 -7.7 cyclic pyranopterin monophosphate synthase MoaC compare
ABZR87_RS09650 -2.4 -4.5 molybdopterin adenylyltransferase compare
ABZR87_RS01605 -2.3 -5.6 shikimate dehydrogenase compare
ABZR87_RS23215 -2.3 -7.4 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS21365 -2.2 -1.3 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS08700 -2.2 -8.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS07050 -2.2 -1.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS07620 -2.1 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS05590 -2.1 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS00275 -2.1 -7.4 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS07705 -2.1 -4.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS00875 -2.0 -4.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS10780 -2.0 -3.7 PD-(D/E)XK nuclease family protein compare
ABZR87_RS01645 -1.9 -3.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01675 -1.9 -2.9 carbohydrate kinase family protein compare
ABZR87_RS18865 -1.9 -7.4 MFS transporter compare
ABZR87_RS02575 -1.9 -5.4 transposase compare
ABZR87_RS02150 -1.9 -2.3 lysozyme inhibitor LprI family protein compare
ABZR87_RS06455 -1.9 -3.2 IclR family transcriptional regulator compare
ABZR87_RS09635 -1.9 -2.2 ribosome small subunit-dependent GTPase A compare
ABZR87_RS14235 -1.8 -5.7 formyltetrahydrofolate deformylase compare
ABZR87_RS16250 -1.8 -4.3 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS19095 -1.8 -4.3 gluconate:H+ symporter compare
ABZR87_RS01700 -1.8 -1.6 DUF2147 domain-containing protein compare
ABZR87_RS07625 -1.8 -2.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS00215 -1.8 -3.8 sulfite exporter TauE/SafE family protein compare
ABZR87_RS16960 -1.8 -4.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS08625 -1.8 -1.2 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS07320 -1.8 -5.0 gluconokinase compare
ABZR87_RS23230 -1.7 -6.3 NAD(P)-dependent oxidoreductase compare
ABZR87_RS15505 -1.7 -1.1 DNA polymerase III subunit alpha compare
ABZR87_RS08980 -1.7 -3.1 cell envelope integrity protein TolA compare
ABZR87_RS09030 -1.7 -2.7 NAD(P)-dependent oxidoreductase compare
ABZR87_RS10550 -1.7 -0.9 outer membrane protein assembly factor BamC compare
ABZR87_RS07700 -1.7 -1.1 peptidylprolyl isomerase compare
ABZR87_RS22910 -1.6 -1.8 6-phosphogluconolactonase compare
ABZR87_RS23210 -1.6 -6.6 carbohydrate porin compare
ABZR87_RS19675 -1.5 -1.2 cold-shock protein compare
ABZR87_RS10045 -1.5 -1.5 lactate utilization protein C compare
ABZR87_RS11010 -1.4 -2.4 oxidative damage protection protein compare
ABZR87_RS11370 -1.4 -2.5 DUF47 domain-containing protein compare
ABZR87_RS10620 -1.4 -1.8 serine O-acetyltransferase compare
ABZR87_RS20810 -1.4 -2.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
ABZR87_RS08105 -1.4 -4.8 molybdopterin-guanine dinucleotide biosynthesis protein B compare
ABZR87_RS04500 -1.4 -1.3 hypothetical protein compare
ABZR87_RS21940 -1.4 -0.7 hypothetical protein compare
ABZR87_RS11460 -1.3 -2.2 gephyrin-like molybdotransferase Glp compare
ABZR87_RS15440 -1.3 -2.1 ribonuclease G compare
ABZR87_RS18975 -1.3 -1.0 entericidin A/B family lipoprotein compare
ABZR87_RS05495 -1.3 -1.0 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS10785 -1.3 -3.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS13645 -1.3 -1.0 hypothetical protein compare
ABZR87_RS04945 -1.3 -1.5 DUF4390 domain-containing protein compare
ABZR87_RS10165 -1.3 -5.9 RNA polymerase sigma factor RpoE compare
ABZR87_RS08070 -1.2 -1.4 pyruvate kinase compare
ABZR87_RS01035 -1.2 -2.7 histidine utilization repressor compare
ABZR87_RS10930 -1.2 -1.3 outer membrane protein assembly factor BamB compare
ABZR87_RS09460 -1.2 -3.3 prephenate dehydrogenase compare
ABZR87_RS21285 -1.2 -1.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS22485 -1.2 -4.1 FAD-dependent oxidoreductase compare
ABZR87_RS16185 -1.2 -1.6 dCTP deaminase compare
ABZR87_RS14510 -1.2 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS08585 -1.2 -1.2 chemotaxis protein CheW compare
ABZR87_RS07035 -1.2 -5.0 RNase adapter RapZ compare
ABZR87_RS06845 -1.2 -4.3 heme o synthase compare
ABZR87_RS01270 -1.2 -4.6 ATP-dependent DNA helicase RecG compare
ABZR87_RS06300 -1.1 -2.5 SDR family oxidoreductase compare
ABZR87_RS12345 -1.1 -0.8 dethiobiotin synthase compare
ABZR87_RS06695 -1.1 -4.4 P-II family nitrogen regulator compare
ABZR87_RS09655 -1.1 -2.1 ribosome biogenesis factor YjgA compare
ABZR87_RS05060 -1.1 -2.3 DUF484 family protein compare
ABZR87_RS08645 -1.1 -0.8 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS08400 -1.1 -1.7 glycine zipper 2TM domain-containing protein compare
ABZR87_RS01690 -1.0 -0.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS16155 -1.0 -2.0 ferritin-like domain-containing protein compare
ABZR87_RS15810 -1.0 -1.9 hypothetical protein compare
ABZR87_RS12330 -1.0 -1.7 hypothetical protein compare
ABZR87_RS11860 -1.0 -3.2 RIP metalloprotease RseP compare
ABZR87_RS21110 -1.0 -1.8 GntR family transcriptional regulator compare
ABZR87_RS11990 -1.0 -1.5 hypothetical protein compare
ABZR87_RS08620 -1.0 -2.5 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
ABZR87_RS10820 -1.0 -2.8 LysR substrate-binding domain-containing protein compare
ABZR87_RS05085 -1.0 -6.0 lactonase family protein compare
ABZR87_RS06355 -1.0 -3.8 SPOR domain-containing protein compare
ABZR87_RS23415 -1.0 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS02850 -1.0 -1.6 elongation factor Tu compare
ABZR87_RS13285 -1.0 -4.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10510 -1.0 -2.4 DUF4166 domain-containing protein compare
ABZR87_RS08985 -1.0 -5.1 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS09175 -0.9 -2.1 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
ABZR87_RS16860 -0.9 -1.6 response regulator compare
ABZR87_RS21795 -0.9 -3.0 NUDIX domain-containing protein compare
ABZR87_RS03930 -0.9 -1.1 glycine cleavage system protein GcvH compare
ABZR87_RS17595 -0.9 -1.3 hypothetical protein compare
ABZR87_RS07675 -0.9 -4.0 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS07335 -0.9 -1.3 hypothetical protein compare
ABZR87_RS07760 -0.9 -1.8 HlyC/CorC family transporter compare
ABZR87_RS22340 -0.9 -0.6 hypothetical protein compare
ABZR87_RS07645 -0.9 -2.8 Fis family transcriptional regulator compare
ABZR87_RS11760 -0.9 -0.4 membrane protein compare
ABZR87_RS08970 -0.9 -3.2 protein TolQ compare
ABZR87_RS01245 -0.9 -3.3 Dps family protein compare
ABZR87_RS02525 -0.9 -0.9 ABC transporter ATP-binding protein compare
ABZR87_RS10865 -0.9 -3.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR87_RS21380 -0.9 -3.0 hypothetical protein compare
ABZR87_RS06705 -0.9 -4.9 glutamate--cysteine ligase compare
ABZR87_RS14440 -0.9 -2.0 phasin family protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Ralstonia sp. UNC404CL21Col

For nitrogen source Sodium nitrate across organisms