Experiment set11IT006 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Bergenin 10 mM

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -4.4 -4.3 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -3.9 -4.6 SirA-like protein compare
Psyr_4340 -3.8 -9.2 phosphomethylpyrimidine kinase, putative compare
Psyr_1613 -3.7 -5.0 septum site-determining protein MinC compare
Psyr_4684 -3.4 -3.3 biotin synthesis protein BioC compare
Psyr_4627 -3.2 -3.7 dimethyladenosine transferase compare
Psyr_4203 -3.1 -3.0 SsrA-binding protein compare
Psyr_4740 -2.8 -6.8 thiazole-phosphate synthase compare
Psyr_4687 -2.8 -8.4 biotin synthase compare
Psyr_1907 -2.7 -4.4 GTP cyclohydrolase I compare
Psyr_4341 -2.7 -7.8 thiamine-phosphate diphosphorylase compare
Psyr_1663 -2.6 -3.8 phosphoribosylanthranilate isomerase compare
Psyr_0849 -2.5 -11.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4091 -2.5 -6.0 8-oxo-dGTPase compare
Psyr_3008 -2.4 -6.5 Undecaprenyl-diphosphatase compare
Psyr_4686 -2.4 -6.5 8-amino-7-oxononanoate synthase compare
Psyr_4683 -2.3 -4.7 dethiobiotin synthase compare
Psyr_0917 -2.3 -11.2 ABC-2 compare
Psyr_0454 -2.1 -5.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4991 -2.0 -3.3 hypothetical protein compare
Psyr_1556 -1.9 -2.8 hypothetical protein compare
Psyr_0918 -1.8 -10.7 ABC transporter compare
Psyr_0574 -1.8 -5.6 protease FtsH subunit HflK compare
Psyr_0565 -1.8 -6.6 Protein of unknown function UPF0126 compare
Psyr_4822 -1.6 -3.2 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0575 -1.6 -3.7 protease FtsH subunit HflC compare
Psyr_1408 -1.5 -3.3 Holliday junction endonuclease RuvC compare
Psyr_1097 -1.5 -3.1 glycine cleavage system H protein compare
Psyr_4884 -1.5 -5.4 Rhodanese-like protein compare
Psyr_1227 -1.5 -3.0 Queuosine biosynthesis protein compare
Psyr_4581 -1.4 -2.2 anthranilate synthase, component II compare
Psyr_0014 -1.4 -2.9 lipid A biosynthesis acyltransferase compare
Psyr_2285 -1.4 -2.1 Twin-arginine translocation pathway signal compare
Psyr_5132 -1.4 -3.3 Glucose-inhibited division protein A subfamily compare
Psyr_0826 -1.4 -6.4 glucose-6-phosphate isomerase compare
Psyr_4136 -1.4 -2.7 BolA-like protein compare
Psyr_0282 -1.4 -3.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0475 -1.4 -2.7 Protein of unknown function YGGT compare
Psyr_1667 -1.4 -5.0 Colicin V production protein compare
Psyr_0487 -1.3 -2.6 glutathione synthase compare
Psyr_3193 -1.3 -2.4 Transcription factor jumonji, jmjC compare
Psyr_3287 -1.2 -2.0 DNA topoisomerase I compare
Psyr_1779 -1.2 -2.7 hypothetical protein compare
Psyr_1903 -1.2 -2.9 conserved hypothetical protein compare
Psyr_1419 -1.2 -2.9 preQ(0) biosynthesis protein QueC compare
Psyr_2664 -1.2 -5.8 hypothetical protein compare
Psyr_2255 -1.2 -2.8 ABC transporter compare
Psyr_2264 -1.1 -1.9 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4089 -1.1 -4.7 PAS compare
Psyr_1588 -1.1 -2.7 Putative exonuclease, RdgC compare
Psyr_1751 -1.1 -3.7 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4774 -1.1 -2.1 Hypothetical protein compare
Psyr_4362 -1.1 -2.3 Rare lipoprotein A compare
Psyr_1718 -1.1 -3.5 von Willebrand factor, type A compare
Psyr_0255 -1.1 -1.7 glutamate-cysteine ligase compare
Psyr_3954 -1.1 -3.8 GTP-binding protein LepA compare
Psyr_3806 -1.1 -3.0 hypothetical protein compare
Psyr_0493 -1.1 -3.2 CheW-like protein compare
Psyr_4580 -1.1 -2.1 anthranilate phosphoribosyltransferase compare
Psyr_1688 -1.1 -1.9 Protein of unknown function DUF1315 compare
Psyr_1373 -1.1 -2.4 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0529 -1.1 -3.8 Glycosyl transferase, group 1 compare
Psyr_2143 -1.0 -1.7 delta1-piperideine 2-carboxylate reductase compare
Psyr_0281 -1.0 -3.2 ABC transporter compare
Psyr_3906 -1.0 -1.5 regulatory protein, DeoR compare
Psyr_3805 -1.0 -2.2 hypothetical protein compare
Psyr_4566 -1.0 -5.7 Peptidase M23B compare
Psyr_1748 -1.0 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4350 -1.0 -2.5 Protein of unknown function DUF218 compare
Psyr_2807 -1.0 -1.7 NinB compare
Psyr_3644 -1.0 -2.5 prephenate dehydrogenase compare
Psyr_2642 -1.0 -3.0 hypothetical protein compare
Psyr_1930 -0.9 -2.4 hypothetical protein compare
Psyr_1555 -0.9 -2.3 Cobyrinic acid a,c-diamide synthase compare
Psyr_4361 -0.9 -2.4 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_2921 -0.9 -1.5 ADP-ribosylglycohydrolase compare
Psyr_3013 -0.9 -1.3 magnesium chelatase subunit ChlD compare
Psyr_1410 -0.9 -2.8 Holliday junction DNA helicase RuvB compare
Psyr_2854 -0.9 -2.7 conserved hypothetical protein compare
Psyr_0034 -0.9 -1.0 tryptophan synthase, beta chain compare
Psyr_2347 -0.9 -1.3 hypothetical protein compare
Psyr_2980 -0.9 -2.5 UDP-glucose pyrophosphorylase compare
Psyr_2312 -0.9 -1.3 Protein of unknown function DUF24 compare
Psyr_0941 -0.9 -4.3 Conserved hypothetical protein 92 compare
Psyr_0215 -0.9 -5.7 Exodeoxyribonuclease III xth compare
Psyr_3620 -0.9 -0.9 hypothetical protein compare
Psyr_2847 -0.9 -1.7 hypothetical protein compare
Psyr_1749 -0.9 -3.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_0927 -0.9 -2.0 hypothetical protein compare
Psyr_3640 -0.9 -1.7 conserved hypothetical protein compare
Psyr_3581 -0.8 -3.5 ribosomal large subunit pseudouridine synthase B compare
Psyr_1404 -0.8 -4.8 Ferritin and Dps compare
Psyr_3947 -0.8 -2.2 Methyltransferase, putative compare
Psyr_1832 -0.8 -2.1 Exonuclease compare
Psyr_5130 -0.8 -5.0 chromosome segregation ATPase compare
Psyr_1864 -0.8 -2.7 spermidine synthase compare
Psyr_2433 -0.8 -2.1 conserved hypothetical protein compare
Psyr_2151 -0.8 -1.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_0724 -0.8 -1.7 conserved hypothetical protein compare
Psyr_3127 -0.8 -2.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2769 -0.8 -2.2 conserved hypothetical protein compare
Psyr_2071 -0.8 -1.3 outer membrane lipoprotein OprI compare
Psyr_0033 -0.8 -0.6 tryptophan synthase, alpha chain compare
Psyr_0919 -0.8 -5.4 Chromosome segregation ATPase-like protein compare
Psyr_3728 -0.8 -3.1 hypothetical protein compare
Psyr_2540 -0.8 -1.1 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4460 -0.8 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_1250 -0.8 -2.7 conserved hypothetical protein compare
Psyr_4634 -0.8 -1.5 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_4309 -0.8 -2.8 hypothetical protein compare
Psyr_2641 -0.8 -1.2 hypothetical protein compare
Psyr_4519 -0.8 -4.2 General substrate transporter:Major facilitator superfamily compare
Psyr_0549 -0.8 -1.3 Metallophosphoesterase compare
Psyr_4609 -0.8 -5.4 anthranilate synthase, component I compare
Psyr_1935 -0.8 -3.3 Protein of unknown function DUF796 compare
Psyr_0464 -0.8 -1.5 hypothetical protein compare
Psyr_3198 -0.8 -1.5 NADH dehydrogenase subunit B compare
Psyr_3020 -0.7 -1.5 precorrin-4 C11-methyltransferase compare
Psyr_3324 -0.7 -3.0 transcriptional regulator, TetR family compare
Psyr_2595 -0.7 -2.3 Dimethylmenaquinone methyltransferase compare
Psyr_5072 -0.7 -1.0 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2095 -0.7 -2.4 Conserved TM helix compare
Psyr_3290 -0.7 -1.7 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_1989 -0.7 -3.4 galactonate dehydratase compare
Psyr_1806 -0.7 -2.1 Ureidoglycolate hydrolase compare
Psyr_2855 -0.7 -1.7 methionine synthase (B12-independent) compare
Psyr_0579 -0.7 -5.0 RNAse R compare
Psyr_4194 -0.7 -2.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_3090 -0.7 -1.6 hypothetical protein compare
Psyr_2471 -0.7 -1.3 hydroxymethylglutaryl-CoA lyase compare
Psyr_3036 -0.7 -2.2 transcriptional regulator, TetR family compare
Psyr_2894 -0.7 -1.0 conserved hypothetical protein compare
Psyr_3255 -0.7 -2.0 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_1455 -0.7 -2.6 conserved hypothetical protein compare
Psyr_0638 -0.7 -1.5 Peptidase S16, lon N-terminal compare
Psyr_4593 -0.7 -1.9 sigma factor domain protein compare
Psyr_0060 -0.7 -3.1 Protein of unknown function DUF513 compare
Psyr_4051 -0.7 -1.4 transcriptional regulator, ArsR family compare
Psyr_0406 -0.7 -3.2 Pilus assembly protein, PilQ compare
Psyr_4115 -0.7 -1.3 phosphoheptose isomerase compare
Psyr_2973 -0.7 -1.6 Glyoxalase I compare
Psyr_2779 -0.7 -1.5 Phage minor tail compare
Psyr_2462 -0.7 -2.1 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_5030 -0.7 -2.6 chorismate lyase compare
Psyr_3374 -0.7 -2.1 Heavy metal response regulator compare
Psyr_1094 -0.7 -1.5 cold-shock DNA-binding protein family compare
Psyr_3005 -0.7 -1.0 3-oxoadipate enol-lactonase compare
Psyr_4454 -0.7 -2.0 HupE/UreJ protein compare
Psyr_0817 -0.7 -2.8 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_3164 -0.6 -3.8 Protein of unknown function UPF0005 compare
Psyr_1460 -0.6 -2.6 hypothetical protein compare
Psyr_0053 -0.6 -1.7 conserved hypothetical protein compare
Psyr_0492 -0.6 -4.5 Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt compare
Psyr_4933 -0.6 -3.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_1528 -0.6 -1.5 Arc-like DNA binding protein compare
Psyr_2639 -0.6 -3.4 hypothetical protein compare
Psyr_2798 -0.6 -2.8 hypothetical protein compare
Psyr_4317 -0.6 -3.0 Probable taurine catabolism dioxygenase-like protein compare
Psyr_2430 -0.6 -3.1 NUDIX hydrolase compare
Psyr_1615 -0.6 -2.4 Patatin compare
Psyr_2591 -0.6 -2.7 transport system permease protein compare
Psyr_3807 -0.6 -2.5 hypothetical protein compare
Psyr_3949 -0.6 -3.0 DNA replication and repair protein RecO compare
Psyr_3427 -0.6 -0.8 conserved hypothetical protein compare
Psyr_2069 -0.6 -1.6 conserved hypothetical protein compare
Psyr_3484 -0.6 -2.1 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0524 -0.6 -2.0 Lipopolysaccharide kinase compare
Psyr_4622 -0.6 -2.7 Nucleotidyl transferase compare
Psyr_2657 -0.6 -3.5 hypothetical protein compare
Psyr_4407 -0.6 -1.4 phosphoribosylamine--glycine ligase compare
Psyr_1540 -0.6 -1.7 hypothetical protein compare
Psyr_2899 -0.6 -2.6 conserved hypothetical protein compare
Psyr_3439 -0.6 -2.5 GTP-binding signal recognition particle SRP54, G-domain protein compare
Psyr_3089 -0.6 -4.8 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_2422 -0.6 -1.8 transcriptional regulator, LysR family compare
Psyr_3808 -0.6 -1.2 hypothetical protein compare
Psyr_1350 -0.6 -1.7 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_2592 -0.6 -2.4 transport system permease protein compare
Psyr_2346 -0.6 -2.1 conserved hypothetical protein compare
Psyr_3678 -0.6 -2.9 adenosylcobinamide-phosphate synthase compare
Psyr_1931 -0.6 -2.0 hypothetical protein compare
Psyr_0674 -0.6 -1.4 Protein of unknown function UPF0029 compare
Psyr_3896 -0.6 -1.4 BFD-like [2Fe-2S]-binding region compare
Psyr_3199 -0.6 -1.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_2345 -0.6 -2.4 ea59 protein compare
Psyr_3226 -0.6 -1.8 Transcriptional activator RfaH compare
Psyr_0055 -0.6 -2.8 FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type compare
Psyr_3084 -0.6 -1.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0664 -0.6 -2.5 ABC transporter compare
Psyr_RNA28 -0.6 -0.9 tRNA-Val compare
Psyr_1747 -0.6 -2.1 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1670 -0.6 -1.4 Short-chain dehydrogenase/reductase SDR compare
Psyr_4112 -0.6 -3.6 Protein of unknown function UPF0011 compare
Psyr_3284 -0.6 -1.9 SOS cell division inhibitor SulA compare
Psyr_0025 -0.6 -2.3 shikimate dehydrogenase compare
Psyr_3637 -0.6 -4.3 Glycosyl transferase, family 4 compare
Psyr_3291 -0.6 -2.8 hypothetical protein compare
Psyr_0491 -0.6 -1.5 chemotaxis sensory transducer compare
Psyr_4881 -0.6 -2.0 RNA methyltransferase TrmH, group 2 compare
Psyr_2562 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Bergenin across organisms