Experiment set11IT006 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrate 20mM

200 most important genes:

  gene name fitness t score description  
ABZR87_RS18875 -7.7 -4.6 nitrite reductase small subunit NirD compare
ABZR87_RS14505 -7.4 -5.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS01810 -7.2 -4.7 glutamate 5-kinase compare
ABZR87_RS14540 -7.1 -4.9 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14950 -6.8 -4.1 acetolactate synthase small subunit compare
ABZR87_RS09450 -6.8 -9.3 prephenate dehydratase compare
ABZR87_RS11460 -6.7 -4.6 gephyrin-like molybdotransferase Glp compare
ABZR87_RS11815 -6.7 -12.1 [protein-PII] uridylyltransferase compare
ABZR87_RS09465 -6.5 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS16170 -6.3 -4.3 argininosuccinate lyase compare
ABZR87_RS11070 -6.3 -11.3 nitrogen regulation protein NR(I) compare
ABZR87_RS14490 -6.1 -10.2 tryptophan synthase subunit alpha compare
ABZR87_RS02570 -6.1 -27.7 glutamate synthase-related protein compare
ABZR87_RS22920 -6.0 -4.1 phosphogluconate dehydratase compare
ABZR87_RS00210 -5.8 -10.5 nitrite/sulfite reductase compare
ABZR87_RS02565 -5.8 -7.5 glutamate synthase subunit beta compare
ABZR87_RS22910 -5.8 -3.1 6-phosphogluconolactonase compare
ABZR87_RS07380 -5.7 -15.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS10070 -5.7 -3.1 gephyrin-like molybdotransferase Glp compare
ABZR87_RS02145 -5.7 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS07360 -5.6 -13.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS00190 -5.5 -12.3 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS04865 -5.5 -3.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS13790 -5.5 -12.6 chorismate synthase compare
ABZR87_RS02640 -5.4 -14.0 diaminopimelate decarboxylase compare
ABZR87_RS14500 -5.3 -14.1 tryptophan synthase subunit beta compare
ABZR87_RS05200 -5.3 -16.5 homoserine O-acetyltransferase compare
ABZR87_RS22970 -5.2 -11.0 cystathionine gamma-synthase family protein compare
ABZR87_RS00285 -5.2 -3.6 acetylornithine transaminase compare
ABZR87_RS02590 -5.2 -12.4 3-dehydroquinate synthase compare
ABZR87_RS14530 -5.1 -11.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS02140 -5.1 -17.8 anthranilate synthase component I compare
ABZR87_RS00835 -5.1 -3.5 argininosuccinate synthase compare
ABZR87_RS07060 -5.0 -16.9 RNA polymerase factor sigma-54 compare
ABZR87_RS11065 -5.0 -8.5 nitrogen regulation protein NR(II) compare
ABZR87_RS16140 -4.9 -15.3 phosphoenolpyruvate carboxylase compare
ABZR87_RS14535 -4.9 -6.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02595 -4.8 -10.8 shikimate kinase compare
ABZR87_RS14955 -4.6 -3.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS01110 -4.5 -10.3 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02160 -4.5 -5.4 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00875 -4.5 -6.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS00185 -4.4 -6.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS13175 -4.4 -3.2 tRNA-Leu compare
ABZR87_RS08630 -4.3 -5.9 dihydroorotase compare
ABZR87_RS09445 -4.3 -6.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS09615 -4.3 -2.0 50S ribosomal protein L19 compare
ABZR87_RS02155 -4.2 -5.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS11440 -4.1 -6.5 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS00200 -4.1 -4.3 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00205 -4.1 -3.3 DUF934 domain-containing protein compare
ABZR87_RS07665 -4.0 -10.4 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS07320 -4.0 -7.1 gluconokinase compare
ABZR87_RS06910 -3.9 -5.0 ANTAR domain-containing protein compare
ABZR87_RS01675 -3.9 -2.7 carbohydrate kinase family protein compare
ABZR87_RS18880 -3.9 -8.6 FAD-dependent oxidoreductase conserved
ABZR87_RS00195 -3.9 -4.5 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS10075 -3.8 -5.5 molybdenum cofactor guanylyltransferase MobA conserved
ABZR87_RS11470 -3.8 -4.5 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS18885 -3.8 -10.0 nitrate reductase conserved
ABZR87_RS13300 -3.8 -10.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS13250 -3.7 -3.2 phosphoserine phosphatase SerB compare
ABZR87_RS11170 -3.7 -1.4 FixH family protein compare
ABZR87_RS13050 -3.7 -1.4 GpE family phage tail protein compare
ABZR87_RS05170 -3.6 -6.0 acetylglutamate kinase compare
ABZR87_RS05100 -3.6 -5.7 RNA polymerase-binding protein DksA compare
ABZR87_RS08015 -3.4 -8.7 cyclic pyranopterin monophosphate synthase MoaC compare
ABZR87_RS09650 -3.4 -5.2 molybdopterin adenylyltransferase compare
ABZR87_RS16960 -3.3 -6.0 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS22915 -3.3 -7.6 glucose-6-phosphate dehydrogenase compare
ABZR87_RS00220 -3.3 -8.0 CysB family HTH-type transcriptional regulator compare
ABZR87_RS04785 -3.2 -7.1 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS18870 -3.2 -7.3 nitrite reductase large subunit NirB compare
ABZR87_RS09935 -3.1 -3.7 amino acid aminotransferase compare
ABZR87_RS10080 -3.1 -7.2 GTP 3',8-cyclase MoaA compare
ABZR87_RS07050 -3.1 -2.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08695 -3.1 -13.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS12785 -3.0 -7.7 endopeptidase La compare
ABZR87_RS23215 -2.9 -5.1 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS06770 -2.8 -5.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS12790 -2.8 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06495 -2.7 -2.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS20945 -2.7 -2.9 DNA-3-methyladenine glycosylase I compare
ABZR87_RS05590 -2.7 -1.8 orotate phosphoribosyltransferase compare
ABZR87_RS23220 -2.7 -6.7 xylose ABC transporter ATP-binding protein compare
ABZR87_RS01645 -2.7 -4.3 type II 3-dehydroquinate dehydratase compare
ABZR87_RS16180 -2.7 -5.4 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS23225 -2.7 -5.5 sugar ABC transporter permease compare
ABZR87_RS18865 -2.7 -6.8 MFS transporter compare
ABZR87_RS15440 -2.6 -3.7 ribonuclease G compare
ABZR87_RS09460 -2.3 -5.0 prephenate dehydrogenase compare
ABZR87_RS14235 -2.3 -6.5 formyltetrahydrofolate deformylase compare
ABZR87_RS13705 -2.3 -1.5 integration host factor subunit alpha compare
ABZR87_RS06030 -2.3 -1.1 AraC family transcriptional regulator compare
ABZR87_RS02480 -2.3 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS09895 -2.2 -1.3 DUF1841 family protein compare
ABZR87_RS01605 -2.2 -4.8 shikimate dehydrogenase compare
ABZR87_RS06395 -2.2 -5.8 response regulator compare
ABZR87_RS10620 -2.2 -2.3 serine O-acetyltransferase compare
ABZR87_RS05350 -2.2 -3.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS08700 -2.2 -9.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS13475 -2.1 -6.2 PAS domain S-box protein compare
ABZR87_RS07620 -2.1 -3.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS16250 -2.1 -3.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS13285 -2.1 -8.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS01780 -2.1 -1.4 MarC family protein compare
ABZR87_RS12795 -2.0 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS07635 -2.0 -2.6 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS23210 -2.0 -7.5 carbohydrate porin compare
ABZR87_RS01690 -2.0 -0.9 collagen-like triple helix repeat-containing protein compare
ABZR87_RS04125 -2.0 -5.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS00215 -2.0 -4.1 sulfite exporter TauE/SafE family protein compare
ABZR87_RS09030 -1.9 -2.5 NAD(P)-dependent oxidoreductase compare
ABZR87_RS11370 -1.9 -3.0 DUF47 domain-containing protein compare
ABZR87_RS18165 -1.8 -1.3 hypothetical protein compare
ABZR87_RS19095 -1.8 -3.4 gluconate:H+ symporter compare
ABZR87_RS00435 -1.7 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS08625 -1.7 -1.2 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS10550 -1.7 -1.3 outer membrane protein assembly factor BamC compare
ABZR87_RS08980 -1.7 -3.4 cell envelope integrity protein TolA compare
ABZR87_RS14115 -1.6 -3.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS17145 -1.6 -7.3 AMP nucleosidase compare
ABZR87_RS15705 -1.6 -2.6 UvrD-helicase domain-containing protein compare
ABZR87_RS13645 -1.5 -1.0 hypothetical protein compare
ABZR87_RS01420 -1.5 -2.4 outer membrane protein assembly factor BamE compare
ABZR87_RS00275 -1.5 -5.5 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS18035 -1.4 -1.8 flagellar synthesis regulator FleN compare
ABZR87_RS23230 -1.4 -4.7 NAD(P)-dependent oxidoreductase compare
ABZR87_RS08970 -1.4 -4.3 protein TolQ compare
ABZR87_RS02575 -1.4 -4.5 transposase compare
ABZR87_RS13540 -1.4 -1.6 DUF1488 family protein compare
ABZR87_RS04945 -1.4 -1.7 DUF4390 domain-containing protein compare
ABZR87_RS12490 -1.4 -1.8 DUF4936 family protein compare
ABZR87_RS10780 -1.3 -2.9 PD-(D/E)XK nuclease family protein compare
ABZR87_RS05065 -1.3 -2.3 tyrosine recombinase XerC compare
ABZR87_RS08105 -1.3 -4.5 molybdopterin-guanine dinucleotide biosynthesis protein B compare
ABZR87_RS13290 -1.3 -3.3 3-ketoacyl-ACP reductase compare
ABZR87_RS10785 -1.3 -3.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS06595 -1.3 -1.2 DUF2917 domain-containing protein compare
ABZR87_RS20690 -1.3 -1.5 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS10165 -1.2 -6.5 RNA polymerase sigma factor RpoE compare
ABZR87_RS14495 -1.2 -2.0 site-specific DNA-methyltransferase compare
ABZR87_RS01035 -1.2 -3.4 histidine utilization repressor compare
ABZR87_RS11060 -1.2 -3.4 hypothetical protein compare
ABZR87_RS15810 -1.2 -2.0 hypothetical protein compare
ABZR87_RS01225 -1.2 -2.2 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS11990 -1.1 -1.1 hypothetical protein compare
ABZR87_RS05015 -1.1 -3.0 penicillin-binding protein 2 compare
ABZR87_RS06875 -1.1 -2.9 DNA-binding protein YbiB compare
ABZR87_RS19240 -1.1 -4.5 molybdate ABC transporter permease subunit compare
ABZR87_RS21095 -1.1 -0.6 TRAP transporter small permease compare
ABZR87_RS11010 -1.1 -0.9 oxidative damage protection protein compare
ABZR87_RS05580 -1.1 -1.1 diaminopimelate epimerase compare
ABZR87_RS02655 -1.0 -4.2 anti-sigma factor compare
ABZR87_RS20430 -1.0 -1.2 YfiR family protein compare
ABZR87_RS11015 -1.0 -2.2 amino-acid N-acetyltransferase compare
ABZR87_RS05085 -1.0 -6.1 lactonase family protein compare
ABZR87_RS20075 -1.0 -0.9 DUF2892 domain-containing protein compare
ABZR87_RS18170 -1.0 -1.2 hypothetical protein compare
ABZR87_RS09655 -1.0 -2.0 ribosome biogenesis factor YjgA compare
ABZR87_RS09515 -1.0 -0.9 cysteine synthase CysM compare
ABZR87_RS07675 -1.0 -4.0 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS05205 -1.0 -2.2 methionine biosynthesis protein MetW compare
ABZR87_RS01430 -1.0 -5.4 LysR family transcriptional regulator compare
ABZR87_RS20985 -1.0 -1.9 hypothetical protein compare
ABZR87_RS00795 -1.0 -2.0 site-specific tyrosine recombinase XerD compare
ABZR87_RS07005 -1.0 -1.3 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS14745 -1.0 -1.0 urease subunit gamma compare
ABZR87_RS14510 -1.0 -2.7 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS09820 -1.0 -1.6 RidA family protein compare
ABZR87_RS08660 -1.0 -2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS07625 -1.0 -1.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS10865 -1.0 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR87_RS04860 -1.0 -2.1 phage holin family protein compare
ABZR87_RS10240 -1.0 -0.9 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS23445 -0.9 -1.4 malonate decarboxylase subunit delta compare
ABZR87_RS05010 -0.9 -2.0 rod shape-determining protein RodA compare
ABZR87_RS07470 -0.9 -3.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06845 -0.9 -4.2 heme o synthase compare
ABZR87_RS14790 -0.9 -2.3 acyl-CoA dehydrogenase compare
ABZR87_RS12260 -0.9 -1.3 (2Fe-2S)-binding protein compare
ABZR87_RS00385 -0.9 -0.5 response regulator transcription factor compare
ABZR87_RS07760 -0.9 -1.5 HlyC/CorC family transporter compare
ABZR87_RS09955 -0.9 -3.4 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS06705 -0.9 -5.0 glutamate--cysteine ligase compare
ABZR87_RS18445 -0.9 -1.9 MaoC family dehydratase compare
ABZR87_RS18190 -0.9 -1.5 Ivy family c-type lysozyme inhibitor compare
ABZR87_RS22420 -0.9 -1.2 nuclear transport factor 2 family protein compare
ABZR87_RS21815 -0.9 -0.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS01070 -0.9 -2.3 hypothetical protein compare
ABZR87_RS00150 -0.9 -4.8 leucyl aminopeptidase compare
ABZR87_RS23415 -0.9 -1.3 metalloregulator ArsR/SmtB family transcription factor compare
ABZR87_RS21835 -0.9 -1.9 hypothetical protein compare
ABZR87_RS09175 -0.9 -2.2 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
ABZR87_RS21800 -0.9 -2.4 SPFH domain-containing protein compare
ABZR87_RS20495 -0.9 -0.8 hypothetical protein compare
ABZR87_RS00970 -0.9 -1.0 molecular chaperone DnaJ compare
ABZR87_RS00865 -0.8 -0.8 VTT domain-containing protein compare
ABZR87_RS06365 -0.8 -2.0 DUF1840 domain-containing protein compare
ABZR87_RS21285 -0.8 -1.1 TetR/AcrR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Ralstonia sp. UNC404CL21Col

For nitrogen source Sodium nitrate across organisms