Experiment set11IT006 for Ralstonia sp. UNC404CL21Col

Compare to:

nitrogen source Sodium nitrate 20mM

200 most detrimental genes:

  gene name fitness t score description  
ABZR87_RS07510 +1.6 4.2 LysR family transcriptional regulator compare
ABZR87_RS06405 +1.5 1.2 hypothetical protein compare
ABZR87_RS19320 +1.4 2.1 hypothetical protein compare
ABZR87_RS00745 +1.4 2.7 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS05140 +1.3 2.3 ATP-binding protein compare
ABZR87_RS17080 +1.3 1.6 DUF2946 family protein compare
ABZR87_RS05130 +1.3 1.3 CsbD family protein compare
ABZR87_RS18400 +1.3 2.3 hypothetical protein compare
ABZR87_RS01375 +1.2 8.7 two-component system hybrid sensor histidine kinase/response regulator PhcR compare
ABZR87_RS18975 +1.2 1.3 entericidin A/B family lipoprotein compare
ABZR87_RS20090 +1.2 3.2 universal stress protein compare
ABZR87_RS04565 +1.1 2.8 PaaI family thioesterase compare
ABZR87_RS15275 +1.1 1.6 hypothetical protein compare
ABZR87_RS23295 +1.1 1.3 hypothetical protein compare
ABZR87_RS10400 +1.1 1.8 hypothetical protein compare
ABZR87_RS01485 +1.0 2.1 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS02485 +1.0 1.1 MarC family protein compare
ABZR87_RS01165 +1.0 2.4 VOC family protein compare
ABZR87_RS10700 +1.0 5.0 C40 family peptidase compare
ABZR87_RS13010 +1.0 1.2 GPW/gp25 family protein compare
ABZR87_RS11075 +1.0 2.1 hypothetical protein compare
ABZR87_RS11980 +0.9 0.9 cold-shock protein compare
ABZR87_RS08915 +0.9 2.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS12970 +0.9 2.5 putative holin compare
ABZR87_RS08205 +0.9 1.4 hypothetical protein compare
ABZR87_RS22060 +0.9 3.0 flagellar export protein FliJ compare
ABZR87_RS16070 +0.9 3.7 Smr/MutS family protein compare
ABZR87_RS00360 +0.9 1.7 acyl-CoA desaturase compare
ABZR87_RS22205 +0.9 2.4 flagellar biosynthetic protein FliO compare
ABZR87_RS01560 +0.9 3.6 ribonuclease domain-containing protein compare
ABZR87_RS15240 +0.9 0.8 YicC/YloC family endoribonuclease compare
ABZR87_RS01510 +0.9 2.2 YidB family protein compare
ABZR87_RS18560 +0.9 2.1 NmrA family NAD(P)-binding protein compare
ABZR87_RS21700 +0.8 1.8 hypothetical protein compare
ABZR87_RS12780 +0.8 1.3 HU family DNA-binding protein compare
ABZR87_RS07735 +0.8 1.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS02115 +0.8 4.5 murein transglycosylase A compare
ABZR87_RS08585 +0.8 0.9 chemotaxis protein CheW compare
ABZR87_RS02320 +0.8 1.3 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS06290 +0.8 2.4 HAD family phosphatase compare
ABZR87_RS10870 +0.8 3.1 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS23290 +0.8 1.0 2-hydroxychromene-2-carboxylate isomerase compare
ABZR87_RS14375 +0.8 1.8 fumarate hydratase compare
ABZR87_RS15290 +0.8 2.2 hypothetical protein compare
ABZR87_RS07535 +0.8 2.6 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS19075 +0.8 1.9 hypothetical protein compare
ABZR87_RS00050 +0.8 2.3 adenosylcobinamide-phosphate synthase CbiB compare
ABZR87_RS08040 +0.8 3.1 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS23380 +0.8 0.9 chemotaxis protein CheW compare
ABZR87_RS15380 +0.8 1.6 SDR family oxidoreductase compare
ABZR87_RS07700 +0.8 1.3 peptidylprolyl isomerase compare
ABZR87_RS12965 +0.8 2.0 tail protein X compare
ABZR87_RS08750 +0.8 2.0 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS22710 +0.7 1.9 VOC family protein compare
ABZR87_RS01980 +0.7 2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS18140 +0.7 1.5 type III secretion system export apparatus subunit SctR compare
ABZR87_RS11895 +0.7 2.5 ribonuclease HII compare
ABZR87_RS21225 +0.7 0.9 LysR family transcriptional regulator compare
ABZR87_RS14680 +0.7 1.5 SDR family oxidoreductase compare
ABZR87_RS04215 +0.7 1.3 ABC transporter ATP-binding protein compare
ABZR87_RS08045 +0.7 2.2 zinc-finger domain-containing protein compare
ABZR87_RS07850 +0.7 2.9 DEAD/DEAH box helicase compare
ABZR87_RS08555 +0.7 2.2 hypothetical protein compare
ABZR87_RS20450 +0.7 1.0 HAD family phosphatase compare
ABZR87_RS01370 +0.7 4.7 ATP-binding protein compare
ABZR87_RS15005 +0.7 2.6 TIGR00730 family Rossman fold protein compare
ABZR87_RS10305 +0.7 1.4 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABZR87_RS16845 +0.7 0.8 hypothetical protein compare
ABZR87_RS17865 +0.7 0.9 cation:proton antiporter compare
ABZR87_RS01005 +0.7 1.1 RNA-binding S4 domain-containing protein compare
ABZR87_RS11600 +0.7 3.0 aspartate/glutamate racemase family protein compare
ABZR87_RS11970 +0.7 1.2 hypothetical protein compare
ABZR87_RS12070 +0.7 1.4 porin compare
ABZR87_RS02525 +0.7 1.8 ABC transporter ATP-binding protein compare
ABZR87_RS06825 +0.7 1.2 twin transmembrane helix small protein compare
ABZR87_RS04210 +0.7 2.8 ABC transporter ATP-binding protein compare
ABZR87_RS00765 +0.7 3.7 N-acetylmuramoyl-L-alanine amidase compare
ABZR87_RS01660 +0.7 1.9 50S ribosomal protein L11 methyltransferase compare
ABZR87_RS06300 +0.7 1.5 SDR family oxidoreductase compare
ABZR87_RS09190 +0.7 2.5 DsbA family protein compare
ABZR87_RS14415 +0.7 0.8 hemin uptake protein HemP compare
ABZR87_RS13120 +0.7 2.8 helix-turn-helix transcriptional regulator compare
ABZR87_RS22625 +0.7 2.0 hypothetical protein compare
ABZR87_RS20825 +0.7 1.8 nuclear transport factor 2 family protein compare
ABZR87_RS19970 +0.6 1.7 hypothetical protein compare
ABZR87_RS13445 +0.6 1.7 phasin family protein compare
ABZR87_RS18325 +0.6 1.1 ferredoxin family protein compare
ABZR87_RS13560 +0.6 1.3 hypothetical protein compare
ABZR87_RS00810 +0.6 1.3 helix-turn-helix domain-containing protein compare
ABZR87_RS18455 +0.6 2.2 shikimate dehydrogenase compare
ABZR87_RS00645 +0.6 1.7 oxidoreductase compare
ABZR87_RS12955 +0.6 2.4 terminase endonuclease subunit compare
ABZR87_RS12980 +0.6 1.6 N-acetylmuramidase family protein compare
ABZR87_RS10875 +0.6 4.3 RNA polymerase sigma factor RpoS compare
ABZR87_RS14005 +0.6 1.3 MerR family transcriptional regulator compare
ABZR87_RS16975 +0.6 1.4 hypothetical protein compare
ABZR87_RS21950 +0.6 2.3 hypothetical protein compare
ABZR87_RS08525 +0.6 1.7 prepilin peptidase compare
ABZR87_RS14750 +0.6 1.8 urease accessory protein UreD compare
ABZR87_RS01895 +0.6 2.3 M23 family metallopeptidase compare
ABZR87_RS15315 +0.6 2.5 DUF979 domain-containing protein compare
ABZR87_RS15485 +0.6 1.9 glycosyltransferase family 2 protein compare
ABZR87_RS14445 +0.6 2.2 PRC-barrel domain-containing protein compare
ABZR87_RS17625 +0.6 1.5 SDR family oxidoreductase compare
ABZR87_RS12715 +0.6 2.0 LysR family transcriptional regulator compare
ABZR87_RS21415 +0.6 1.6 OmpA family protein compare
ABZR87_RS14455 +0.6 1.0 nodulation factor ABC transporter ATP-binding protein NodI compare
ABZR87_RS00575 +0.6 3.6 HipA N-terminal domain-containing protein compare
ABZR87_RS16270 +0.6 0.9 cold-shock protein compare
ABZR87_RS12100 +0.6 1.6 DsbA family protein compare
ABZR87_RS08380 +0.6 2.1 RidA family protein compare
ABZR87_RS05645 +0.6 1.9 SDR family oxidoreductase compare
ABZR87_RS08505 +0.6 0.8 CpaE family protein compare
ABZR87_RS23235 +0.6 2.8 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS00560 +0.6 2.7 DNA-3-methyladenine glycosylase 2 compare
ABZR87_RS10230 +0.6 1.8 beta-N-acetylhexosaminidase compare
ABZR87_RS11760 +0.6 0.4 membrane protein compare
ABZR87_RS15480 +0.6 3.9 glycosyltransferase family 25 protein compare
ABZR87_RS05255 +0.6 2.3 aldolase compare
ABZR87_RS13420 +0.6 2.7 D-alanyl-D-alanine endopeptidase compare
ABZR87_RS04605 +0.6 1.0 DUF2795 domain-containing protein compare
ABZR87_RS15450 +0.6 1.3 2-dehydropantoate 2-reductase compare
ABZR87_RS17695 +0.5 1.4 helix-turn-helix transcriptional regulator compare
ABZR87_RS12950 +0.5 3.0 phage major capsid protein, P2 family compare
ABZR87_RS08410 +0.5 1.3 hypothetical protein compare
ABZR87_RS22325 +0.5 1.0 H-NS histone family protein compare
ABZR87_RS08530 +0.5 1.6 Flp family type IVb pilin compare
ABZR87_RS15015 +0.5 1.3 group II truncated hemoglobin compare
ABZR87_RS02190 +0.5 2.5 DsbC family protein compare
ABZR87_RS00230 +0.5 1.1 NAD(P)-dependent oxidoreductase compare
ABZR87_RS17245 +0.5 1.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS06655 +0.5 2.0 hypothetical protein compare
ABZR87_RS07815 +0.5 0.7 MaoC/PaaZ C-terminal domain-containing protein compare
ABZR87_RS22715 +0.5 2.4 ABC transporter substrate-binding protein compare
ABZR87_RS08635 +0.5 2.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS07555 +0.5 1.2 DUF3025 domain-containing protein compare
ABZR87_RS16545 +0.5 1.3 enoyl-CoA hydratase family protein compare
ABZR87_RS12000 +0.5 1.4 DUF2182 domain-containing protein compare
ABZR87_RS22955 +0.5 1.6 cytochrome c oxidase subunit 3 compare
ABZR87_RS19100 +0.5 0.9 RidA family protein compare
ABZR87_RS01565 +0.5 3.1 NADP-dependent malic enzyme compare
ABZR87_RS11175 +0.5 2.3 hypothetical protein compare
ABZR87_RS19115 +0.5 2.8 amino acid deaminase compare
ABZR87_RS15490 +0.5 3.0 glycosyltransferase family 2 protein compare
ABZR87_RS19825 +0.5 2.9 sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein compare
ABZR87_RS15325 +0.5 1.6 5-oxoprolinase subunit PxpA compare
ABZR87_RS09505 +0.5 2.5 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS11775 +0.5 1.9 DMT family transporter compare
ABZR87_RS15690 +0.5 1.6 hypothetical protein compare
ABZR87_RS12605 +0.5 1.2 ABC transporter ATP-binding protein compare
ABZR87_RS08680 +0.5 2.7 glycosyltransferase compare
ABZR87_RS02285 +0.5 2.7 glucan biosynthesis protein G compare
ABZR87_RS14780 +0.5 0.7 MaoC family dehydratase compare
ABZR87_RS10045 +0.5 0.4 lactate utilization protein C compare
ABZR87_RS11240 +0.5 1.5 MarR family transcriptional regulator compare
ABZR87_RS15495 +0.5 3.3 O-antigen ligase family protein compare
ABZR87_RS19225 +0.5 2.1 TOBE domain-containing protein compare
ABZR87_RS19370 +0.5 1.8 hypothetical protein compare
ABZR87_RS03830 +0.5 2.0 exonuclease compare
ABZR87_RS19980 +0.5 0.8 DUF1488 domain-containing protein compare
ABZR87_RS20730 +0.5 0.5 hypothetical protein compare
ABZR87_RS04270 +0.5 2.1 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS22980 +0.5 1.0 hypothetical protein compare
ABZR87_RS23180 +0.5 0.4 ABC transporter ATP-binding protein compare
ABZR87_RS21240 +0.5 1.7 1,2-phenylacetyl-CoA epoxidase subunit PaaE compare
ABZR87_RS07435 +0.5 1.0 DUF502 domain-containing protein compare
ABZR87_RS14145 +0.5 1.7 leucine efflux protein LeuE compare
ABZR87_RS14010 +0.5 0.7 avidin/streptavidin family protein compare
ABZR87_RS01745 +0.5 1.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS12580 +0.5 1.6 bifunctional nicotinamidase/pyrazinamidase compare
ABZR87_RS02325 +0.5 1.7 cytochrome o ubiquinol oxidase subunit III compare
ABZR87_RS19045 +0.5 1.3 DUF333 domain-containing protein compare
ABZR87_RS04265 +0.5 2.8 phenylalanine 4-monooxygenase compare
ABZR87_RS01365 +0.5 2.9 class I SAM-dependent methyltransferase PhcB compare
ABZR87_RS03110 +0.5 1.7 alpha/beta fold hydrolase compare
ABZR87_RS01515 +0.5 1.5 LysR family transcriptional regulator compare
ABZR87_RS09325 +0.5 2.2 LysR family transcriptional regulator compare
ABZR87_RS03905 +0.5 2.7 pyruvate kinase compare
ABZR87_RS21195 +0.5 1.8 amino acid ABC transporter permease compare
ABZR87_RS12350 +0.5 1.6 hypothetical protein compare
ABZR87_RS02315 +0.5 1.5 winged helix DNA-binding domain-containing protein compare
ABZR87_RS12355 +0.5 1.7 hypothetical protein compare
ABZR87_RS22960 +0.5 1.1 heme-copper oxidase subunit III family protein compare
ABZR87_RS17785 +0.4 2.1 AEC family transporter compare
ABZR87_RS02290 +0.4 2.7 glucans biosynthesis glucosyltransferase MdoH compare
ABZR87_RS02540 +0.4 2.0 VacJ family lipoprotein compare
ABZR87_RS21220 +0.4 1.3 class I SAM-dependent methyltransferase compare
ABZR87_RS01285 +0.4 0.6 preprotein translocase subunit YajC compare
ABZR87_RS11610 +0.4 1.8 universal stress protein compare
ABZR87_RS22560 +0.4 1.4 glutathione S-transferase compare
ABZR87_RS13975 +0.4 1.7 Lrp/AsnC family transcriptional regulator compare
ABZR87_RS06350 +0.4 1.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS05570 +0.4 1.6 lysophospholipid acyltransferase family protein compare
ABZR87_RS01255 +0.4 2.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS16875 +0.4 1.4 response regulator transcription factor compare
ABZR87_RS08965 +0.4 1.1 tol-pal system-associated acyl-CoA thioesterase compare
ABZR87_RS05315 +0.4 3.4 efflux RND transporter permease subunit compare
ABZR87_RS10910 +0.4 0.7 RodZ family helix-turn-helix domain-containing protein compare
ABZR87_RS01470 +0.4 1.3 L-arabinose ABC transporter permease AraH compare
ABZR87_RS15505 +0.4 0.5 DNA polymerase III subunit alpha compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Sodium nitrate in Ralstonia sp. UNC404CL21Col

For nitrogen source Sodium nitrate across organisms