Experiment set11IT005 for Burkholderia phytofirmans PsJN

Compare to:

Sebacic acid carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS01590 -6.7 -5.6 methionine biosynthesis protein MetW compare
BPHYT_RS33835 -6.2 -10.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33915 -6.0 -7.1 isopropylmalate isomerase compare
BPHYT_RS17670 -5.8 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16270 -5.7 -4.2 phosphoglycerate kinase compare
BPHYT_RS09500 -5.7 -7.2 glucose-6-phosphate isomerase compare
BPHYT_RS16245 -5.5 -6.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17685 -5.5 -9.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS09515 -5.3 -5.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33865 -5.2 -9.3 tryptophan synthase alpha chain compare
BPHYT_RS14895 -5.1 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15920 -5.0 -11.6 argininosuccinate synthase compare
BPHYT_RS06900 -5.0 -7.9 aspartate aminotransferase compare
BPHYT_RS04965 -4.9 -9.3 ATP-binding protein compare
BPHYT_RS17890 -4.9 -2.5 shikimate kinase compare
BPHYT_RS15915 -4.8 -11.6 ornithine carbamoyltransferase compare
BPHYT_RS01455 -4.7 -1.4 peptide deformylase compare
BPHYT_RS04725 -4.7 -7.9 sulfite reductase compare
BPHYT_RS17680 -4.6 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06545 -4.6 -9.4 acetolactate synthase compare
BPHYT_RS33875 -4.6 -6.3 tryptophan synthase subunit alpha compare
BPHYT_RS14190 -4.5 -11.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06555 -4.5 -11.7 ketol-acid reductoisomerase compare
BPHYT_RS17690 -4.4 -11.8 imidazole glycerol phosphate synthase compare
BPHYT_RS33880 -4.4 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS01435 -4.4 -28.4 LysR family transcriptional regulator compare
BPHYT_RS17855 -4.4 -14.9 glutamate synthase compare
BPHYT_RS06405 -4.4 -6.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS17395 -4.4 -2.2 anthranilate synthase subunit II compare
BPHYT_RS06610 -4.3 -1.8 triosephosphate isomerase compare
BPHYT_RS18320 -4.3 -10.9 orotate phosphoribosyltransferase compare
BPHYT_RS12845 -4.2 -17.1 ATPase compare
BPHYT_RS03150 -4.2 -9.6 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16835 -4.1 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33900 -4.1 -12.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS12985 -4.0 -2.8 amino acid acetyltransferase compare
BPHYT_RS25030 -4.0 -6.0 gluconate 2-dehydrogenase compare
BPHYT_RS17715 -3.9 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16905 -3.9 -5.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12285 -3.9 -6.7 isocitrate lyase compare
BPHYT_RS17390 -3.9 -14.6 anthranilate synthase subunit I compare
BPHYT_RS25035 -3.9 -7.3 long-chain fatty acid--CoA ligase compare
BPHYT_RS23650 -3.9 -1.1 hypothetical protein compare
BPHYT_RS12815 -3.9 -5.9 IclR family transcriptional regulator compare
BPHYT_RS14915 -3.8 -9.1 phosphoserine aminotransferase compare
BPHYT_RS17380 -3.8 -8.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS16675 -3.8 -2.4 dihydroorotase compare
BPHYT_RS33840 -3.7 -6.7 amidophosphoribosyltransferase compare
BPHYT_RS08565 -3.7 -1.5 dihydroorotate dehydrogenase compare
BPHYT_RS01595 -3.7 -8.5 homoserine O-acetyltransferase compare
BPHYT_RS13705 -3.6 -4.0 chorismate synthase compare
BPHYT_RS15620 -3.6 -4.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08955 -3.6 -5.3 homoserine dehydrogenase compare
BPHYT_RS04720 -3.6 -6.0 transcriptional regulator compare
BPHYT_RS13220 -3.5 -10.2 phosphomethylpyrimidine synthase compare
BPHYT_RS02610 -3.5 -3.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33535 -3.5 -19.8 RNA polymerase sigma factor RpoD compare
BPHYT_RS16255 -3.4 -4.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS02590 -3.4 -6.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS03640 -3.3 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS04740 -3.3 -6.1 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS16840 -3.3 -3.8 transketolase compare
BPHYT_RS15670 -3.2 -8.5 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS17885 -3.2 -5.6 3-dehydroquinate synthase compare
BPHYT_RS14195 -3.2 -2.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS16345 -3.1 -5.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS36275 -3.1 -2.4 hypothetical protein compare
BPHYT_RS03645 -3.0 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS12530 -3.0 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS08850 -3.0 -1.7 transcriptional regulator compare
BPHYT_RS17400 -3.0 -6.9 anthranilate phosphoribosyltransferase compare
BPHYT_RS17675 -3.0 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04730 -3.0 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS03535 -3.0 -5.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS18705 -2.9 -2.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS17700 -2.9 -5.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04745 -2.8 -3.1 sulfate adenylyltransferase compare
BPHYT_RS29810 -2.6 -1.5 hexapeptide transferase compare
BPHYT_RS33645 -2.5 -3.4 homoserine kinase compare
BPHYT_RS25820 -2.5 -2.2 sugar ABC transporter compare
BPHYT_RS15015 -2.5 -1.5 ArsR family transcriptional regulator compare
BPHYT_RS35885 -2.5 -5.6 hypothetical protein compare
BPHYT_RS20070 -2.4 -3.5 hypothetical protein compare
BPHYT_RS00340 -2.4 -1.6 hypothetical protein compare
BPHYT_RS04955 -2.3 -2.1 methionyl-tRNA synthetase compare
BPHYT_RS03725 -2.3 -1.1 serine hydroxymethyltransferase compare
BPHYT_RS23230 -2.3 -1.3 histidine kinase compare
BPHYT_RS03570 -2.3 -4.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS12465 -2.2 -2.9 inositol monophosphatase compare
BPHYT_RS06105 -2.2 -1.8 hypothetical protein compare
BPHYT_RS23875 -2.1 -1.2 sugar ABC transporter ATP-binding protein compare
BPHYT_RS33905 -2.1 -1.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS03625 -2.1 -7.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS14845 -2.1 -1.7 cysteine synthase compare
BPHYT_RS17490 -2.1 -2.7 haloacid dehalogenase compare
BPHYT_RS33540 -2.0 -1.9 hypothetical protein compare
BPHYT_RS15650 -2.0 -8.2 quinolinate synthetase compare
BPHYT_RS34400 -2.0 -2.9 hypothetical protein compare
BPHYT_RS16340 -2.0 -4.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS13390 -1.9 -1.2 IclR family transcriptional regulator compare
BPHYT_RS09560 -1.9 -2.3 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS25970 -1.9 -1.2 urea amidolyase compare
BPHYT_RS20095 -1.9 -1.0 transcriptional regulator compare
BPHYT_RS01585 -1.9 -5.9 major facilitator superfamily protein compare
BPHYT_RS20155 -1.9 -1.6 hypothetical protein compare
BPHYT_RS35655 -1.8 -2.1 hypothetical protein compare
BPHYT_RS14910 -1.8 -6.5 chorismate mutase compare
BPHYT_RS13545 -1.8 -3.9 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data) compare
BPHYT_RS12060 -1.8 -1.7 hypothetical protein compare
BPHYT_RS13550 -1.8 -2.4 acyl-CoA dehydrogenase compare
BPHYT_RS28705 -1.8 -1.5 IclR family transcriptional regulator compare
BPHYT_RS34815 -1.8 -1.5 ABC transporter compare
BPHYT_RS15710 -1.7 -1.8 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06530 -1.7 -2.4 membrane protein compare
BPHYT_RS33615 -1.7 -3.3 decarboxylase compare
BPHYT_RS15645 -1.7 -5.3 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS18590 -1.7 -0.9 hypothetical protein compare
BPHYT_RS06410 -1.7 -2.8 transcriptional regulator compare
BPHYT_RS31260 -1.6 -1.7 histidine kinase compare
BPHYT_RS30055 -1.6 -1.8 hypothetical protein compare
BPHYT_RS09315 -1.6 -1.0 chemotaxis protein CheY compare
BPHYT_RS15640 -1.6 -8.8 L-aspartate oxidase compare
BPHYT_RS25470 -1.6 -1.5 alkylhydroperoxidase compare
BPHYT_RS34320 -1.6 -3.5 DNA-binding protein compare
BPHYT_RS16555 -1.6 -2.9 cation transporter compare
BPHYT_RS33850 -1.6 -1.1 sporulation protein compare
BPHYT_RS30995 -1.6 -1.0 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS13555 -1.6 -1.8 acyl-CoA dehydrogenase compare
BPHYT_RS18655 -1.6 -4.6 3-oxoacyl-ACP synthase compare
BPHYT_RS30415 -1.5 -2.0 AraC family transcriptional regulator compare
BPHYT_RS16880 -1.5 -1.6 malic enzyme compare
BPHYT_RS33655 -1.5 -3.2 MarR family transcriptional regulator compare
BPHYT_RS28605 -1.5 -1.7 NADPH-dependent FMN reductase compare
BPHYT_RS06375 -1.5 -5.5 ribonuclease compare
BPHYT_RS06335 -1.5 -1.2 CopG family transcriptional regulator compare
BPHYT_RS29485 -1.5 -1.6 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS31815 -1.5 -2.9 hypothetical protein compare
BPHYT_RS10040 -1.5 -1.3 hypothetical protein compare
BPHYT_RS28880 -1.5 -3.5 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS14835 -1.5 -5.8 deacetylase compare
BPHYT_RS25080 -1.4 -1.7 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS08995 -1.4 -1.1 hypothetical protein compare
BPHYT_RS02135 -1.4 -1.6 glyoxylate reductase compare
BPHYT_RS12855 -1.4 -1.9 hypothetical protein compare
BPHYT_RS13540 -1.4 -7.2 LysR family transcriptional regulator compare
BPHYT_RS19325 -1.4 -2.4 glycine cleavage system H protein compare
BPHYT_RS28365 -1.4 -1.6 Germin subfamily 1 member 15 compare
BPHYT_RS16710 -1.3 -1.0 LysR family transcriptional regulator compare
BPHYT_RS08060 -1.3 -5.6 ribosome maturation factor RimP compare
BPHYT_RS28870 -1.3 -2.1 MarR family transcriptional regulator compare
BPHYT_RS16135 -1.3 -4.7 ABC transporter ATP-binding protein compare
BPHYT_RS02285 -1.3 -4.0 cell division protein compare
BPHYT_RS02965 -1.3 -1.4 membrane protein compare
BPHYT_RS07515 -1.3 -1.8 photosystem reaction center subunit H compare
BPHYT_RS32870 -1.3 -2.4 hypothetical protein compare
BPHYT_RS06500 -1.3 -2.8 LOG family protein compare
BPHYT_RS05730 -1.3 -3.3 hypothetical protein compare
BPHYT_RS08125 -1.3 -5.5 ATPase compare
BPHYT_RS34625 -1.3 -2.3 hypothetical protein compare
BPHYT_RS02975 -1.3 -1.8 membrane protein compare
BPHYT_RS21860 -1.3 -1.3 hypothetical protein compare
BPHYT_RS14670 -1.2 -1.0 hypothetical protein compare
BPHYT_RS20790 -1.2 -1.3 TetR family transcriptional regulator compare
BPHYT_RS34745 -1.2 -0.8 hypothetical protein compare
BPHYT_RS15470 -1.2 -5.0 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS04750 -1.2 -2.9 uroporphyrin-III C-methyltransferase compare
BPHYT_RS13245 -1.2 -2.0 hypothetical protein compare
BPHYT_RS18760 -1.2 -1.7 flagellar biosynthesis protein FliT compare
BPHYT_RS05690 -1.2 -1.9 hypothetical protein compare
BPHYT_RS14550 -1.2 -0.9 tRNA-Asn compare
BPHYT_RS04290 -1.2 -0.9 glycosyl transferase family 2 compare
BPHYT_RS23315 -1.2 -1.3 hypothetical protein compare
BPHYT_RS34445 -1.2 -1.6 GntR family transcriptional regulator compare
BPHYT_RS24500 -1.2 -1.1 histidine kinase compare
BPHYT_RS10540 -1.2 -0.8 secretion protein compare
BPHYT_RS34800 -1.2 -1.4 thioesterase compare
BPHYT_RS29695 -1.2 -1.7 hypothetical protein compare
BPHYT_RS12990 -1.2 -2.1 iron transporter compare
BPHYT_RS33690 -1.1 -1.7 molybdate ABC transporter permease compare
BPHYT_RS26975 -1.1 -2.3 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS17920 -1.1 -0.7 protein CyaY compare
BPHYT_RS31900 -1.1 -2.1 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS07255 -1.1 -1.3 4-oxalocrotonate decarboxylase compare
BPHYT_RS29620 -1.1 -0.8 hypothetical protein compare
BPHYT_RS02690 -1.1 -5.7 protoheme IX farnesyltransferase compare
BPHYT_RS33920 -1.1 -5.3 type II citrate synthase compare
BPHYT_RS02885 -1.1 -6.8 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS16020 -1.1 -1.6 AsnC family transcriptional regulator compare
BPHYT_RS14900 -1.1 -1.9 prephenate dehydrogenase compare
BPHYT_RS21330 -1.1 -1.4 hypothetical protein compare
BPHYT_RS22910 -1.1 -0.7 hypothetical protein compare
BPHYT_RS13345 -1.1 -2.6 crotonase compare
BPHYT_RS29425 -1.1 -3.1 IclR family transcriptional regulator compare
BPHYT_RS16085 -1.1 -2.1 DeoR faimly transcriptional regulator compare
BPHYT_RS25710 -1.1 -1.9 hypothetical protein compare
BPHYT_RS07325 -1.1 -0.7 GntR family transcriptional regulator compare
BPHYT_RS20440 -1.1 -1.3 IclR family transcriptional regulator compare
BPHYT_RS20715 -1.1 -1.2 peptidase compare
BPHYT_RS32930 -1.1 -2.4 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS17405 -1.1 -0.7 indole-3-glycerol phosphate synthase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sebacic acid in Burkholderia phytofirmans PsJN

For carbon source Sebacic acid across organisms