Experiment set11IT003 for Burkholderia phytofirmans PsJN

Compare to:

Suberic acid carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17675 -6.3 -1.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS09515 -5.5 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06545 -4.7 -11.6 acetolactate synthase compare
BPHYT_RS16270 -4.7 -3.8 phosphoglycerate kinase compare
BPHYT_RS17890 -4.6 -2.0 shikimate kinase compare
BPHYT_RS12985 -4.5 -2.3 amino acid acetyltransferase compare
BPHYT_RS14550 -4.4 -1.1 tRNA-Asn compare
BPHYT_RS25970 -4.3 -1.1 urea amidolyase compare
BPHYT_RS06405 -4.3 -6.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS17265 -4.2 -1.1 cell division protein compare
BPHYT_RS17855 -4.2 -17.2 glutamate synthase compare
BPHYT_RS15920 -4.2 -10.3 argininosuccinate synthase compare
BPHYT_RS17405 -4.1 -1.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS29620 -4.1 -1.0 hypothetical protein compare
BPHYT_RS06610 -4.1 -1.4 triosephosphate isomerase compare
BPHYT_RS03640 -3.9 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS14895 -3.8 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33915 -3.8 -6.1 isopropylmalate isomerase compare
BPHYT_RS17700 -3.8 -4.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS13705 -3.7 -4.4 chorismate synthase compare
BPHYT_RS06555 -3.7 -5.9 ketol-acid reductoisomerase compare
BPHYT_RS02610 -3.7 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16905 -3.7 -6.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17400 -3.6 -4.9 anthranilate phosphoribosyltransferase compare
BPHYT_RS12530 -3.6 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33805 -3.5 -0.9 hypothetical protein compare
BPHYT_RS01595 -3.4 -8.4 homoserine O-acetyltransferase compare
BPHYT_RS18320 -3.4 -9.0 orotate phosphoribosyltransferase compare
BPHYT_RS33840 -3.4 -8.8 amidophosphoribosyltransferase compare
BPHYT_RS04955 -3.4 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS03150 -3.4 -8.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16835 -3.4 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33875 -3.4 -6.4 tryptophan synthase subunit alpha compare
BPHYT_RS01590 -3.4 -6.4 methionine biosynthesis protein MetW compare
BPHYT_RS04720 -3.4 -6.9 transcriptional regulator compare
BPHYT_RS33900 -3.3 -9.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS25035 -3.3 -6.0 long-chain fatty acid--CoA ligase compare
BPHYT_RS17715 -3.3 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12845 -3.3 -11.3 ATPase compare
BPHYT_RS17685 -3.3 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33835 -3.3 -5.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17390 -3.2 -11.5 anthranilate synthase subunit I compare
BPHYT_RS33865 -3.2 -7.5 tryptophan synthase alpha chain compare
BPHYT_RS17680 -3.2 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17670 -3.2 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS02590 -3.1 -4.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS03645 -3.1 -1.9 tRNA dimethylallyltransferase compare
BPHYT_RS33645 -3.1 -6.2 homoserine kinase compare
BPHYT_RS12815 -3.0 -5.3 IclR family transcriptional regulator compare
BPHYT_RS17690 -3.0 -7.4 imidazole glycerol phosphate synthase compare
BPHYT_RS16840 -3.0 -3.5 transketolase compare
BPHYT_RS04725 -3.0 -5.1 sulfite reductase compare
BPHYT_RS15915 -3.0 -7.7 ornithine carbamoyltransferase compare
BPHYT_RS16255 -3.0 -6.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16245 -3.0 -5.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14900 -3.0 -2.3 prephenate dehydrogenase compare
BPHYT_RS03280 -2.9 -1.5 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS33535 -2.9 -15.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS14190 -2.9 -6.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS23830 -2.9 -2.4 acetyl-CoA hydrolase compare
BPHYT_RS05905 -2.8 -1.0 hypothetical protein compare
BPHYT_RS04730 -2.8 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS14910 -2.8 -7.8 chorismate mutase compare
BPHYT_RS33880 -2.8 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS08850 -2.8 -1.3 transcriptional regulator compare
BPHYT_RS14400 -2.7 -3.4 anti-sigma factor compare
BPHYT_RS16180 -2.6 -0.9 TetR family transcriptional regulator compare
BPHYT_RS30610 -2.6 -2.8 major facilitator transporter compare
BPHYT_RS08955 -2.6 -3.2 homoserine dehydrogenase compare
BPHYT_RS17395 -2.6 -1.8 anthranilate synthase subunit II compare
BPHYT_RS35885 -2.6 -3.1 hypothetical protein compare
BPHYT_RS23600 -2.6 -1.9 hypothetical protein compare
BPHYT_RS05620 -2.5 -1.2 CsbD family protein compare
BPHYT_RS06900 -2.5 -5.0 aspartate aminotransferase compare
BPHYT_RS05650 -2.5 -1.4 hypothetical protein compare
BPHYT_RS21770 -2.5 -1.6 aldehyde dehydrogenase compare
BPHYT_RS08960 -2.5 -1.5 threonine synthase compare
BPHYT_RS04965 -2.5 -7.0 ATP-binding protein compare
BPHYT_RS13605 -2.5 -1.1 tRNA-Pro compare
BPHYT_RS12990 -2.5 -2.4 iron transporter compare
BPHYT_RS13390 -2.4 -1.0 IclR family transcriptional regulator compare
BPHYT_RS15710 -2.4 -1.5 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS26550 -2.4 -1.3 Fis family transcriptional regulator compare
BPHYT_RS09500 -2.4 -5.1 glucose-6-phosphate isomerase compare
BPHYT_RS12285 -2.4 -6.2 isocitrate lyase compare
BPHYT_RS09280 -2.3 -1.3 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS17885 -2.3 -3.4 3-dehydroquinate synthase compare
BPHYT_RS25030 -2.3 -4.2 gluconate 2-dehydrogenase compare
BPHYT_RS05290 -2.3 -1.1 hypothetical protein compare
BPHYT_RS14845 -2.3 -1.2 cysteine synthase compare
BPHYT_RS30140 -2.3 -1.1 3-methylitaconate isomerase compare
BPHYT_RS26685 -2.3 -1.5 precorrin-8X methylmutase compare
BPHYT_RS09860 -2.2 -0.9 pilus assembly protein PilP compare
BPHYT_RS08130 -2.2 -1.4 transposase compare
BPHYT_RS14505 -2.2 -1.9 membrane protein compare
BPHYT_RS14915 -2.2 -3.1 phosphoserine aminotransferase compare
BPHYT_RS17380 -2.2 -6.2 ribulose-phosphate 3-epimerase compare
BPHYT_RS25210 -2.2 -1.2 drug:proton antiporter compare
BPHYT_RS28470 -2.1 -0.7 hypothetical protein compare
BPHYT_RS08995 -2.1 -1.5 hypothetical protein compare
BPHYT_RS22940 -2.1 -1.2 pilus assembly protein TadE compare
BPHYT_RS08565 -2.1 -1.4 dihydroorotate dehydrogenase compare
BPHYT_RS04740 -2.0 -5.1 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS09980 -2.0 -1.1 TetR family transcriptional regulator compare
BPHYT_RS03725 -2.0 -0.8 serine hydroxymethyltransferase compare
BPHYT_RS16340 -2.0 -3.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS04745 -2.0 -3.5 sulfate adenylyltransferase compare
BPHYT_RS02760 -1.9 -2.0 cytochrome BD oxidase subunit II compare
BPHYT_RS14195 -1.9 -2.1 carbamoyl phosphate synthase small subunit compare
BPHYT_RS11825 -1.9 -1.0 cytosine deaminase compare
BPHYT_RS30415 -1.9 -1.3 AraC family transcriptional regulator compare
BPHYT_RS14585 -1.9 -1.8 hypothetical protein compare
BPHYT_RS02865 -1.8 -2.0 hypothetical protein compare
BPHYT_RS13550 -1.8 -3.1 acyl-CoA dehydrogenase compare
BPHYT_RS28885 -1.8 -1.1 betaine-aldehyde dehydrogenase compare
BPHYT_RS28600 -1.8 -1.3 ArsC family transcriptional regulator compare
BPHYT_RS02245 -1.8 -3.1 MerR family transcriptional regulator compare
BPHYT_RS31525 -1.7 -2.5 hypothetical protein compare
BPHYT_RS36435 -1.7 -1.7 hypothetical protein compare
BPHYT_RS16880 -1.7 -1.1 malic enzyme compare
BPHYT_RS06375 -1.7 -3.8 ribonuclease compare
BPHYT_RS06530 -1.7 -1.8 membrane protein compare
BPHYT_RS25075 -1.7 -1.6 AraC family transcriptional regulator compare
BPHYT_RS15015 -1.7 -1.2 ArsR family transcriptional regulator compare
BPHYT_RS08525 -1.7 -0.9 SAM-dependent methyltransferase compare
BPHYT_RS04095 -1.7 -0.6 SAM-dependent methyltransferase PhcB compare
BPHYT_RS01730 -1.7 -1.2 serine/threonine protein kinase compare
BPHYT_RS03535 -1.6 -4.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12615 -1.6 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS06975 -1.6 -1.6 glutamate racemase compare
BPHYT_RS15075 -1.6 -1.2 dihydrokaempferol 4-reductase compare
BPHYT_RS01585 -1.6 -4.0 major facilitator superfamily protein compare
BPHYT_RS14395 -1.6 -4.8 sugar dehydratase compare
BPHYT_RS33990 -1.6 -0.8 ATPase compare
BPHYT_RS10705 -1.5 -2.7 MFS transporter compare
BPHYT_RS30450 -1.5 -0.8 ABC transporter permease compare
BPHYT_RS12060 -1.5 -1.3 hypothetical protein compare
BPHYT_RS15620 -1.5 -2.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS21485 -1.5 -0.9 hypothetical protein compare
BPHYT_RS20440 -1.5 -1.2 IclR family transcriptional regulator compare
BPHYT_RS16020 -1.5 -1.6 AsnC family transcriptional regulator compare
BPHYT_RS35315 -1.5 -1.8 threonyl-tRNA synthetase compare
BPHYT_RS23520 -1.5 -1.3 peroxidase compare
BPHYT_RS22300 -1.5 -1.1 hypothetical protein compare
BPHYT_RS09085 -1.5 -2.6 mannosyltransferase compare
BPHYT_RS36540 -1.4 -2.2 hypothetical protein compare
BPHYT_RS01455 -1.4 -0.8 peptide deformylase compare
BPHYT_RS33920 -1.4 -4.8 type II citrate synthase compare
BPHYT_RS20070 -1.4 -2.1 hypothetical protein compare
BPHYT_RS08340 -1.4 -0.3 chemotaxis protein CheY compare
BPHYT_RS00965 -1.4 -1.8 ArsR family transcriptional regulator compare
BPHYT_RS18705 -1.4 -1.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS09555 -1.4 -6.6 long-chain fatty acid--CoA ligase compare
BPHYT_RS31440 -1.4 -1.1 hypothetical protein compare
BPHYT_RS31255 -1.4 -0.9 cytochrome B561 compare
BPHYT_RS13470 -1.4 -0.7 arylsulfate sulfotransferase compare
BPHYT_RS05910 -1.4 -2.9 hypothetical protein compare
BPHYT_RS34295 -1.4 -0.7 fimbrial protein compare
BPHYT_RS21620 -1.4 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS03625 -1.4 -5.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS34605 -1.4 -2.0 transcriptional regulator compare
BPHYT_RS13220 -1.3 -4.0 phosphomethylpyrimidine synthase compare
BPHYT_RS03135 -1.3 -4.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS12465 -1.3 -2.2 inositol monophosphatase compare
BPHYT_RS31685 -1.3 -1.0 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS10395 -1.3 -1.7 sulfonate ABC transporter compare
BPHYT_RS13555 -1.3 -0.8 acyl-CoA dehydrogenase compare
BPHYT_RS07165 -1.3 -1.1 peptide ABC transporter permease compare
BPHYT_RS15470 -1.3 -4.4 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS26975 -1.3 -1.4 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS14735 -1.3 -0.9 hypothetical protein compare
BPHYT_RS08060 -1.3 -3.4 ribosome maturation factor RimP compare
BPHYT_RS24760 -1.3 -1.9 cytochrome B561 compare
BPHYT_RS06320 -1.3 -1.6 chemotaxis protein CheY compare
BPHYT_RS13545 -1.3 -2.8 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data) compare
BPHYT_RS22135 -1.3 -1.2 3-ketoacyl-ACP reductase compare
BPHYT_RS15650 -1.3 -5.3 quinolinate synthetase compare
BPHYT_RS24925 -1.3 -1.1 cytochrome O ubiquinol oxidase compare
BPHYT_RS10475 -1.3 -1.1 mammalian cell entry protein compare
BPHYT_RS13715 -1.2 -3.1 hypothetical protein compare
BPHYT_RS23940 -1.2 -1.1 GntR family transcriptional regulator compare
BPHYT_RS02435 -1.2 -1.0 hypothetical protein compare
BPHYT_RS27720 -1.2 -0.9 hypothetical protein compare
BPHYT_RS10205 -1.2 -1.7 D-lactate dehydrogenase compare
BPHYT_RS36460 -1.2 -1.5 hypothetical protein compare
BPHYT_RS04215 -1.2 -1.3 hypothetical protein compare
BPHYT_RS36185 -1.2 -1.8 hypothetical protein compare
BPHYT_RS03065 -1.2 -1.1 LuxR family transcriptional regulator compare
BPHYT_RS19905 -1.2 -1.1 membrane protein compare
BPHYT_RS22870 -1.2 -1.1 copper transporter compare
BPHYT_RS01170 -1.2 -1.5 hypothetical protein compare
BPHYT_RS27760 -1.2 -1.5 ABC transporter compare
BPHYT_RS21025 -1.2 -0.8 cation-binding protein compare
BPHYT_RS28280 -1.2 -1.4 hypothetical protein compare
BPHYT_RS33655 -1.2 -2.2 MarR family transcriptional regulator compare
BPHYT_RS27030 -1.2 -0.9 transcriptional regulator compare
BPHYT_RS31415 -1.2 -1.3 amino acid ABC transporter permease compare
BPHYT_RS02690 -1.2 -4.9 protoheme IX farnesyltransferase compare
BPHYT_RS30825 -1.2 -1.4 extradiol dioxygenase compare
BPHYT_RS03090 -1.2 -1.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Suberic acid in Burkholderia phytofirmans PsJN

For carbon source Suberic acid across organisms