Experiment set11IT001 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Dimethyl Sulfoxide 1.25 vol%

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -5.0 -3.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4340 -3.9 -8.2 phosphomethylpyrimidine kinase, putative compare
Psyr_1544 -3.7 -4.9 SirA-like protein compare
Psyr_3008 -3.2 -8.4 Undecaprenyl-diphosphatase compare
Psyr_4740 -3.1 -6.3 thiazole-phosphate synthase compare
Psyr_4203 -3.0 -2.9 SsrA-binding protein compare
Psyr_1556 -2.9 -3.3 hypothetical protein compare
Psyr_4991 -2.9 -3.4 hypothetical protein compare
Psyr_1663 -2.9 -3.8 phosphoribosylanthranilate isomerase compare
Psyr_4684 -2.8 -3.7 biotin synthesis protein BioC compare
Psyr_4091 -2.6 -6.4 8-oxo-dGTPase compare
Psyr_4341 -2.6 -8.1 thiamine-phosphate diphosphorylase compare
Psyr_4687 -2.6 -7.1 biotin synthase compare
Psyr_0454 -2.6 -6.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1613 -2.6 -4.8 septum site-determining protein MinC compare
Psyr_1419 -2.5 -4.1 preQ(0) biosynthesis protein QueC compare
Psyr_0849 -2.4 -10.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4683 -2.4 -4.9 dethiobiotin synthase compare
Psyr_4686 -2.3 -6.3 8-amino-7-oxononanoate synthase compare
Psyr_2347 -2.2 -2.5 hypothetical protein compare
Psyr_2807 -2.0 -2.6 NinB compare
Psyr_0574 -1.9 -5.4 protease FtsH subunit HflK compare
Psyr_5132 -1.8 -3.2 Glucose-inhibited division protein A subfamily compare
Psyr_0918 -1.8 -10.0 ABC transporter compare
Psyr_1935 -1.8 -5.6 Protein of unknown function DUF796 compare
Psyr_0917 -1.8 -9.2 ABC-2 compare
Psyr_3701 -1.7 -2.5 thioredoxin, putative compare
Psyr_2143 -1.7 -2.6 delta1-piperideine 2-carboxylate reductase compare
Psyr_0255 -1.6 -2.1 glutamate-cysteine ligase compare
Psyr_0475 -1.6 -2.4 Protein of unknown function YGGT compare
Psyr_2769 -1.6 -3.5 conserved hypothetical protein compare
Psyr_4581 -1.6 -3.4 anthranilate synthase, component II compare
Psyr_2312 -1.6 -1.9 Protein of unknown function DUF24 compare
Psyr_1748 -1.6 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_RNA61 -1.5 -3.0 tRNA-Gly compare
Psyr_4884 -1.5 -5.0 Rhodanese-like protein compare
Psyr_5133 -1.5 -3.9 tRNA modification GTPase trmE compare
Psyr_5135 -1.4 -1.4 Protein of unknown function DUF37 compare
Psyr_0487 -1.4 -2.6 glutathione synthase compare
Psyr_3954 -1.4 -4.9 GTP-binding protein LepA compare
Psyr_0826 -1.4 -5.5 glucose-6-phosphate isomerase compare
Psyr_2980 -1.4 -3.1 UDP-glucose pyrophosphorylase compare
Psyr_2071 -1.4 -2.4 outer membrane lipoprotein OprI compare
Psyr_0565 -1.4 -4.4 Protein of unknown function UPF0126 compare
Psyr_4580 -1.4 -2.3 anthranilate phosphoribosyltransferase compare
Psyr_2642 -1.4 -3.6 hypothetical protein compare
Psyr_0724 -1.4 -1.8 conserved hypothetical protein compare
Psyr_3193 -1.3 -2.1 Transcription factor jumonji, jmjC compare
Psyr_3581 -1.3 -5.1 ribosomal large subunit pseudouridine synthase B compare
Psyr_4136 -1.3 -2.2 BolA-like protein compare
Psyr_4089 -1.3 -4.8 PAS compare
Psyr_2848 -1.3 -3.9 hypothetical protein compare
Psyr_1555 -1.3 -3.0 Cobyrinic acid a,c-diamide synthase compare
Psyr_4361 -1.2 -3.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_0259 -1.2 -3.0 Osmolarity sensor protein envZ compare
Psyr_0491 -1.2 -3.1 chemotaxis sensory transducer compare
Psyr_1930 -1.2 -2.7 hypothetical protein compare
Psyr_3290 -1.2 -3.3 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_4822 -1.1 -2.2 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_1227 -1.1 -2.8 Queuosine biosynthesis protein compare
Psyr_2345 -1.1 -3.9 ea59 protein compare
Psyr_0464 -1.1 -2.2 hypothetical protein compare
Psyr_2855 -1.1 -2.6 methionine synthase (B12-independent) compare
Psyr_1121 -1.1 -2.4 6-phosphogluconolactonase compare
Psyr_2346 -1.1 -3.2 conserved hypothetical protein compare
Psyr_3806 -1.1 -4.4 hypothetical protein compare
Psyr_1408 -1.1 -2.2 Holliday junction endonuclease RuvC compare
Psyr_1097 -1.1 -2.0 glycine cleavage system H protein compare
Psyr_2823 -1.1 -1.2 hypothetical protein compare
Psyr_3808 -1.0 -1.8 hypothetical protein compare
Psyr_0034 -1.0 -1.0 tryptophan synthase, beta chain compare
Psyr_3342 -1.0 -1.9 conserved hypothetical protein compare
Psyr_0529 -1.0 -4.2 Glycosyl transferase, group 1 compare
Psyr_3466 -1.0 -2.3 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_0281 -1.0 -2.6 ABC transporter compare
Psyr_2137 -1.0 -2.2 molybdopterin molybdochelatase compare
Psyr_4788 -1.0 -1.6 lipoprotein, putative compare
Psyr_4316 -1.0 -2.4 conserved hypothetical protein compare
Psyr_2488 -1.0 -2.2 hypothetical protein compare
Psyr_4627 -1.0 -1.7 dimethyladenosine transferase compare
Psyr_2088 -1.0 -1.6 2-methylaconitate cis-trans isomerase compare
Psyr_2065 -1.0 -2.8 transcription elongation factor GreB compare
Psyr_3620 -1.0 -0.9 hypothetical protein compare
Psyr_2669 -1.0 -2.6 Aminoglycoside phosphotransferase compare
Psyr_4774 -1.0 -1.8 Hypothetical protein compare
Psyr_4416 -0.9 -2.5 precorrin-8X methylmutase compare
Psyr_4051 -0.9 -2.3 transcriptional regulator, ArsR family compare
Psyr_1747 -0.9 -2.9 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2854 -0.9 -3.4 conserved hypothetical protein compare
Psyr_0927 -0.9 -2.9 hypothetical protein compare
Psyr_0170 -0.9 -1.7 heat shock protein Hsp15 compare
Psyr_2095 -0.9 -3.1 Conserved TM helix compare
Psyr_2462 -0.9 -2.6 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_4978 -0.9 -2.0 hypothetical protein compare
Psyr_2847 -0.9 -1.6 hypothetical protein compare
Psyr_4194 -0.9 -3.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4566 -0.9 -5.4 Peptidase M23B compare
Psyr_4309 -0.9 -3.5 hypothetical protein compare
Psyr_0493 -0.9 -1.6 CheW-like protein compare
Psyr_1350 -0.9 -2.1 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0831 -0.9 -1.6 Two-component response regulator CbrB compare
Psyr_0941 -0.9 -4.0 Conserved hypothetical protein 92 compare
Psyr_4754 -0.9 -1.4 16S rRNA m(2)G-966 methyltransferase compare
Psyr_3947 -0.8 -2.1 Methyltransferase, putative compare
Psyr_4512 -0.8 -4.0 putative phage-related protein compare
Psyr_1553 -0.8 -3.8 hypothetical protein compare
Psyr_1931 -0.8 -3.9 hypothetical protein compare
Psyr_1460 -0.8 -3.3 hypothetical protein compare
Psyr_3090 -0.8 -1.8 hypothetical protein compare
Psyr_2894 -0.8 -1.6 conserved hypothetical protein compare
Psyr_2266 -0.8 -1.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0579 -0.8 -6.0 RNAse R compare
Psyr_2601 -0.8 -4.1 regulatory protein, LuxR compare
Psyr_1751 -0.8 -2.6 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4057 -0.8 -2.8 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_3703 -0.8 -2.1 Flavodoxin/nitric oxide synthase compare
Psyr_1371 -0.8 -4.1 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_1509 -0.8 -3.7 PilM protein, putative compare
Psyr_2471 -0.8 -1.6 hydroxymethylglutaryl-CoA lyase compare
Psyr_0919 -0.8 -5.1 Chromosome segregation ATPase-like protein compare
Psyr_0215 -0.8 -5.0 Exodeoxyribonuclease III xth compare
Psyr_2428 -0.8 -2.8 GCN5-related N-acetyltransferase compare
Psyr_4262 -0.8 -1.2 lipoprotein, putative compare
Psyr_0282 -0.8 -2.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2092 -0.8 -1.6 Protein of unknown function 1935 compare
Psyr_0014 -0.8 -2.0 lipid A biosynthesis acyltransferase compare
Psyr_4050 -0.8 -1.5 Protein of unknown function DUF479 compare
Psyr_2880 -0.8 -3.9 conserved hypothetical protein compare
Psyr_0528 -0.7 -1.4 Carbamoyltransferase compare
Psyr_3282 -0.7 -3.3 transcriptional regulator, TetR family compare
Psyr_3805 -0.7 -1.9 hypothetical protein compare
Psyr_1929 -0.7 -2.7 hypothetical protein compare
Psyr_1017 -0.7 -1.8 type III effector HopJ1 compare
Psyr_2175 -0.7 -3.9 L-carnitine dehydratase/bile acid-inducible protein F compare
Psyr_2182 -0.7 -3.0 hypothetical protein compare
Psyr_4112 -0.7 -4.3 Protein of unknown function UPF0011 compare
Psyr_3104 -0.7 -1.8 phosphate ABC transporter membrane protein 2, PhoT family compare
Psyr_RNA78 -0.7 -2.2 5S ribosomal RNA compare
Psyr_0033 -0.7 -0.7 tryptophan synthase, alpha chain compare
Psyr_1667 -0.7 -2.8 Colicin V production protein compare
Psyr_1749 -0.7 -3.6 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_5130 -0.7 -4.3 chromosome segregation ATPase compare
Psyr_0041 -0.7 -2.2 Protein of unknown function DUF1161 compare
Psyr_2326 -0.7 -2.9 lipoprotein, putative compare
Psyr_0923 -0.7 -3.0 hypothetical protein compare
Psyr_2305 -0.7 -2.7 Natural resistance-associated macrophage protein compare
Psyr_3958 -0.7 -4.4 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_3164 -0.7 -4.3 Protein of unknown function UPF0005 compare
Psyr_3807 -0.7 -2.3 hypothetical protein compare
Psyr_2664 -0.7 -3.0 hypothetical protein compare
Psyr_4118 -0.7 -3.5 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0920 -0.7 -5.7 Glycosyl transferase, group 1 compare
Psyr_4362 -0.7 -1.7 Rare lipoprotein A compare
Psyr_1455 -0.7 -2.3 conserved hypothetical protein compare
Psyr_1378 -0.7 -1.5 RecA protein compare
Psyr_1410 -0.7 -2.1 Holliday junction DNA helicase RuvB compare
Psyr_2770 -0.7 -2.8 tail fiber domain protein compare
Psyr_1474 -0.7 -3.8 hypothetical protein compare
Psyr_2798 -0.7 -3.3 hypothetical protein compare
Psyr_1037 -0.7 -1.6 ribosomal subunit interface protein, putative compare
Psyr_4609 -0.7 -4.4 anthranilate synthase, component I compare
Psyr_2842 -0.7 -3.3 hypothetical protein compare
Psyr_1130 -0.7 -2.2 conserved hypothetical protein compare
Psyr_4087 -0.7 -1.2 Protein of unknown function DUF520 compare
Psyr_3034 -0.7 -1.7 conserved hypothetical protein compare
Psyr_0383 -0.7 -1.0 Twin-arginine translocation protein TatB compare
Psyr_1975 -0.7 -1.4 Integrase, catalytic region compare
Psyr_0406 -0.6 -2.2 Pilus assembly protein, PilQ compare
Psyr_5029 -0.6 -1.6 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_3840 -0.6 -2.3 conserved hypothetical protein compare
Psyr_2406 -0.6 -1.8 Flavin reductase-like protein compare
Psyr_0916 -0.6 -4.3 GDP-mannose 4,6-dehydratase compare
Psyr_0827 -0.6 -2.7 pantothenate synthetase compare
Psyr_0817 -0.6 -2.0 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_3040 -0.6 -1.8 conserved hypothetical protein compare
Psyr_3084 -0.6 -1.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0268 -0.6 -1.3 DSBA oxidoreductase compare
Psyr_2757 -0.6 -1.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1907 -0.6 -1.7 GTP cyclohydrolase I compare
Psyr_4933 -0.6 -2.5 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_1245 -0.6 -2.9 23S rRNA m(2)A-2503 methyltransferase compare
Psyr_0549 -0.6 -1.2 Metallophosphoesterase compare
Psyr_4860 -0.6 -1.0 Integrase, catalytic region compare
Psyr_1953 -0.6 -1.1 conserved hypothetical protein compare
Psyr_0792 -0.6 -2.3 conserved hypothetical protein compare
Psyr_1180 -0.6 -3.4 hypothetical protein compare
Psyr_1418 -0.6 -1.5 Radical SAM compare
Psyr_3089 -0.6 -4.9 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_1268 -0.6 -3.3 extracellular solute-binding protein, family 3:SLT compare
Psyr_0575 -0.6 -1.4 protease FtsH subunit HflC compare
Psyr_0648 -0.6 -3.0 transporter, putative compare
Psyr_3932 -0.6 -1.2 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0394 -0.6 -1.9 Heat shock protein HslU compare
Psyr_0202 -0.6 -3.6 transcriptional regulator, LysR family compare
Psyr_3240 -0.6 -1.8 CTP synthase compare
Psyr_3547 -0.6 -2.3 transcriptional regulator, TetR family compare
Psyr_3886 -0.6 -0.9 methionyl-tRNA synthetase compare
Psyr_0580 -0.6 -1.6 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_1250 -0.6 -1.8 conserved hypothetical protein compare
Psyr_0294 -0.6 -2.6 Exopolyphosphatase compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms