Experiment set11H8 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cisplatin 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_3090 -5.4 -8.2 DNA repair protein RecO conserved
Psest_2545 -5.4 -3.2 recombination protein RecR compare
Psest_3647 -5.2 -7.1 Indole-3-glycerol phosphate synthase compare
Psest_2584 -4.8 -6.7 Phosphoribosylanthranilate isomerase compare
Psest_0062 -4.7 -13.4 tryptophan synthase, alpha subunit compare
Psest_1492 -4.6 -8.8 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2259 -4.5 -13.9 excinuclease ABC, C subunit conserved
Psest_0063 -4.4 -12.9 tryptophan synthase, beta subunit compare
Psest_3648 -4.2 -9.5 anthranilate phosphoribosyltransferase compare
Psest_3576 -4.2 -22.3 excinuclease ABC, A subunit conserved
Psest_0004 -3.9 -15.2 recF protein conserved
Psest_1296 -3.9 -10.5 excinuclease ABC, B subunit conserved
Psest_4219 -3.8 -2.6 DNA polymerase I compare
Psest_0259 -3.4 -1.2 cell division ATP-binding protein FtsE compare
Psest_4191 -3.3 -2.3 Transcriptional regulator compare
Psest_1653 -3.3 -18.4 transcription-repair coupling factor (mfd) conserved
Psest_4098 -3.2 -3.8 Superfamily I DNA and RNA helicases compare
Psest_3650 -3.2 -14.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0962 -3.2 -11.9 DNA repair protein RecN conserved
Psest_0212 -3.1 -3.0 exodeoxyribonuclease V, gamma subunit compare
Psest_1496 -3.0 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_2585 -3.0 -1.0 pseudouridylate synthase I compare
Psest_0161 -2.9 -3.4 Membrane-bound metallopeptidase compare
Psest_3338 -2.9 -2.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2872 -2.9 -2.4 protein RecA compare
Psest_2901 -2.9 -2.6 hypothetical protein compare
Psest_3129 -2.7 -1.3 tyrosine recombinase XerD compare
Psest_3401 -2.5 -9.2 DNA repair protein RadA conserved
Psest_2532 -2.4 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_1525 -2.4 -4.9 Uncharacterized protein conserved in bacteria compare
Psest_1869 -2.3 -9.7 ATP-dependent DNA helicase RecQ conserved
Psest_2023 -2.3 -3.8 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2235 -2.3 -9.9 DNA damage response nuclease (from data) conserved
Psest_1532 -2.3 -4.1 DNA recombination-dependent growth factor C compare
Psest_2648 -2.3 -2.3 hypothetical protein compare
Psest_3546 -2.3 -1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3092 -2.2 -1.8 ribonuclease III, bacterial compare
Psest_0411 -2.2 -9.5 biotin synthetase compare
Psest_3649 -2.2 -9.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_4078 -2.2 -2.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1663 -2.1 -3.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0489 -2.1 -1.4 phosphoserine phosphatase SerB compare
Psest_0280 -2.1 -11.0 homoserine O-acetyltransferase compare
Psest_0260 -2.1 -1.8 Cell division protein compare
Psest_4043 -2.0 -2.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3226 -1.9 -1.0 Predicted membrane protein compare
Psest_4335 -1.9 -2.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1986 -1.9 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3767 -1.9 -4.4 tyrosine recombinase XerC compare
Psest_2308 -1.9 -1.0 Predicted Fe-S protein compare
Psest_1242 -1.9 -2.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2946 -1.8 -2.7 septum site-determining protein MinD compare
Psest_1544 -1.8 -7.0 single-stranded-DNA-specific exonuclease RecJ conserved
Psest_0097 -1.8 -1.9 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0515 -1.8 -3.6 rare lipoprotein A compare
Psest_2566 -1.7 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0412 -1.7 -7.7 8-amino-7-oxononanoate synthase compare
Psest_1920 -1.7 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0413 -1.7 -5.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0415 -1.7 -4.5 dethiobiotin synthase compare
Psest_0028 -1.7 -4.6 Coproporphyrinogen III oxidase compare
Psest_1876 -1.7 -3.4 Predicted membrane protein compare
Psest_2530 -1.7 -4.3 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4243 -1.7 -1.7 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2067 -1.7 -1.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0310 -1.6 -3.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1282 -1.6 -2.1 Amidases related to nicotinamidase compare
Psest_2088 -1.6 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2236 -1.6 -9.6 Rad3-related DNA helicases conserved
Psest_3480 -1.6 -1.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0186 -1.6 -4.5 Protein-disulfide isomerase compare
Psest_1724 -1.5 -2.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0514 -1.5 -4.4 lytic murein transglycosylase B compare
Psest_0719 -1.5 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_0172 -1.5 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_0020 -1.5 -3.9 K+ transport systems, NAD-binding component compare
Psest_2810 -1.5 -4.4 5'/3'-nucleotidase SurE compare
Psest_2285 -1.5 -3.1 ATP-dependent protease La compare
Psest_2527 -1.5 -6.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0737 -1.5 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_1388 -1.5 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2857 -1.5 -7.5 Rad3-related DNA helicases conserved
Psest_0306 -1.5 -8.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1204 -1.5 -2.7 Transcriptional regulators compare
Psest_2083 -1.5 -4.1 Putative sterol carrier protein compare
Psest_3828 -1.5 -1.4 zinc-binding alcohol dehydrogenase family protein compare
Psest_0066 -1.4 -1.2 Protein of unknown function (DUF3060). compare
Psest_1463 -1.4 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0503 -1.4 -1.3 Acyl dehydratase compare
Psest_0279 -1.4 -3.9 methionine biosynthesis protein MetW compare
Psest_3447 -1.4 -1.5 Uncharacterized MobA-related protein compare
Psest_3881 -1.4 -1.1 hypothetical protein compare
Psest_1235 -1.4 -4.2 Leucyl aminopeptidase compare
Psest_0485 -1.4 -2.9 clan AA aspartic protease, TIGR02281 family compare
Psest_1700 -1.4 -3.4 Transcriptional regulator compare
Psest_1022 -1.4 -7.1 Thiol:disulfide interchange protein compare
Psest_3377 -1.4 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2714 -1.3 -1.7 7-cyano-7-deazaguanine reductase compare
Psest_4103 -1.3 -1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_3550 -1.3 -1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2304 -1.3 -1.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0655 -1.3 -1.6 Chemotaxis signal transduction protein compare
Psest_0277 -1.3 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1052 -1.3 -3.3 Uncharacterized protein involved in chromosome partitioning compare
Psest_1907 -1.3 -1.3 hypothetical protein compare
Psest_1452 -1.3 -7.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0987 -1.3 -1.7 Predicted periplasmic or secreted lipoprotein compare
Psest_2591 -1.3 -2.0 3-isopropylmalate dehydratase, large subunit compare
Psest_1103 -1.3 -2.2 GTP-binding protein YchF compare
Psest_0998 -1.3 -2.3 poly(A) polymerase compare
Psest_1762 -1.3 -1.7 cytochrome c-type biogenesis protein CcmI compare
Psest_2229 -1.3 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1505 -1.2 -1.4 Organic radical activating enzymes compare
Psest_1540 -1.2 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_2565 -1.2 -2.2 Transcriptional regulator compare
Psest_2288 -1.2 -3.0 trigger factor compare
Psest_2671 -1.2 -1.8 Transcriptional regulator compare
Psest_1878 -1.2 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2766 -1.2 -0.9 hypothetical protein compare
Psest_2578 -1.2 -7.1 O-succinylhomoserine sulfhydrylase compare
Psest_2711 -1.2 -1.9 PilZ domain. compare
Psest_0872 -1.2 -1.2 Helix-turn-helix. compare
Psest_0414 -1.2 -3.0 biotin biosynthesis protein BioC compare
Psest_2001 -1.2 -0.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2025 -1.2 -0.8 cold shock domain protein CspD compare
Psest_3270 -1.1 -1.4 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2613 -1.1 -1.1 hypothetical protein compare
Psest_2775 -1.1 -2.5 Glycerol-3-phosphate dehydrogenase compare
Psest_1655 -1.1 -3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3155 -1.1 -2.4 hypothetical protein compare
Psest_0257 -1.1 -2.5 Predicted Zn-dependent peptidases compare
Psest_3449 -1.1 -1.8 DJ-1 family protein compare
Psest_0970 -1.1 -2.2 hypothetical protein compare
Psest_2104 -1.1 -1.4 IscR-regulated protein YhgI compare
Psest_2358 -1.1 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3191 -1.1 -2.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_3180 -1.1 -5.2 Exonuclease I compare
Psest_3458 -1.1 -2.2 hypothetical protein compare
Psest_2011 -1.1 -5.4 Predicted permease compare
Psest_0846 -1.1 -2.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2446 -1.1 -1.5 acetyl-CoA acetyltransferases compare
Psest_2232 -1.1 -6.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2240 -1.1 -1.2 hypothetical protein compare
Psest_1660 -1.1 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3301 -1.0 -1.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_2531 -1.0 -7.3 cytochrome c oxidase accessory protein FixG compare
Psest_2712 -1.0 -3.3 Surface lipoprotein compare
Psest_3456 -1.0 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1884 -1.0 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0175 -1.0 -4.7 Xaa-Pro aminopeptidase compare
Psest_0692 -1.0 -2.0 rRNA methylase, putative, group 3 compare
Psest_2651 -1.0 -2.5 DNA topoisomerase I, bacterial compare
Psest_3014 -1.0 -1.0 cob(I)alamin adenosyltransferase compare
Psest_3998 -1.0 -4.1 glutamate--cysteine ligase compare
Psest_3960 -1.0 -0.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1126 -1.0 -4.5 Uncharacterized protein conserved in bacteria compare
Psest_0958 -1.0 -3.7 Oligoketide cyclase/lipid transport protein compare
Psest_0759 -1.0 -1.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_0722 -1.0 -4.4 Predicted ATPase compare
Psest_3295 -1.0 -1.8 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_1543 -0.9 -2.2 Predicted transcription regulator, contains HTH domain (MarR family) compare
Psest_3531 -0.9 -0.7 Peptidase propeptide and YPEB domain. compare
Psest_1691 -0.9 -2.0 aminodeoxychorismate lyase compare
Psest_1661 -0.9 -1.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0487 -0.9 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2114 -0.9 -3.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1136 -0.9 -2.8 Prolyl oligopeptidase family. compare
Psest_1999 -0.9 -0.7 pseudouridine synthase compare
Psest_2907 -0.9 -0.8 Protein of unknown function (DUF3618). compare
Psest_4044 -0.9 -1.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1940 -0.9 -2.2 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_0708 -0.9 -0.9 outer membrane assembly lipoprotein YfiO compare
Psest_4363 -0.9 -3.7 ATPases involved in chromosome partitioning compare
Psest_0091 -0.9 -3.3 phosphonate C-P lyase system protein PhnL compare
Psest_1030 -0.9 -2.6 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_4108 -0.9 -3.4 seryl-tRNA(sec) selenium transferase compare
Psest_1184 -0.9 -2.2 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1111 -0.9 -1.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3190 -0.9 -2.6 pyruvate kinase compare
Psest_1421 -0.9 -1.3 Glutathione S-transferase compare
Psest_2918 -0.9 -3.4 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_4274 -0.9 -1.6 hypothetical protein compare
Psest_0442 -0.9 -1.0 ATPases of the AAA+ class compare
Psest_4126 -0.9 -1.2 Predicted peroxiredoxins compare
Psest_2260 -0.9 -5.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3958 -0.9 -2.2 Predicted Fe-S-cluster oxidoreductase compare
Psest_2410 -0.9 -3.7 Superfamily I DNA and RNA helicases compare
Psest_3860 -0.9 -1.6 Predicted permeases compare
Psest_3691 -0.9 -3.6 Predicted membrane protein compare
Psest_4397 -0.9 -3.9 hypothetical protein compare
Psest_2460 -0.9 -1.1 hypothetical protein compare
Psest_1001 -0.8 -1.8 hypothetical protein compare
Psest_1186 -0.8 -3.3 heavy metal sensor kinase compare
Psest_3107 -0.8 -2.9 uracil-DNA glycosylase compare
Psest_3810 -0.8 -0.6 orotate phosphoribosyltransferase compare
Psest_2624 -0.8 -1.4 hypothetical protein compare
Psest_1600 -0.8 -1.3 hypothetical protein compare
Psest_1854 -0.8 -2.7 Domain of Unknown Function (DUF748). compare
Psest_4183 -0.8 -1.2 PilZ domain. compare
Psest_4391 -0.8 -4.6 ATPases involved in chromosome partitioning compare


Specific Phenotypes

For 13 genes in this experiment

For stress Cisplatin in Pseudomonas stutzeri RCH2

For stress Cisplatin across organisms