Experiment set11H6 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cisplatin 0.0016 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_2545 -4.8 -4.3 recombination protein RecR compare
Psest_1492 -4.7 -10.0 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3090 -4.2 -12.0 DNA repair protein RecO conserved
Psest_0062 -4.0 -15.2 tryptophan synthase, alpha subunit compare
Psest_0063 -4.0 -10.9 tryptophan synthase, beta subunit compare
Psest_3648 -4.0 -9.5 anthranilate phosphoribosyltransferase compare
Psest_4219 -3.8 -2.6 DNA polymerase I compare
Psest_4078 -3.8 -2.5 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2584 -3.7 -5.7 Phosphoribosylanthranilate isomerase compare
Psest_3647 -3.7 -9.0 Indole-3-glycerol phosphate synthase compare
Psest_3531 -3.4 -1.6 Peptidase propeptide and YPEB domain. compare
Psest_2872 -3.3 -2.1 protein RecA compare
Psest_0004 -3.1 -12.9 recF protein conserved
Psest_1496 -3.1 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_2259 -3.0 -15.8 excinuclease ABC, C subunit conserved
Psest_3650 -2.8 -12.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1663 -2.8 -4.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2304 -2.6 -1.5 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3576 -2.5 -15.9 excinuclease ABC, A subunit conserved
Psest_0031 -2.5 -2.2 Uncharacterized conserved protein compare
Psest_1296 -2.4 -9.9 excinuclease ABC, B subunit conserved
Psest_3649 -2.4 -10.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0161 -2.2 -2.6 Membrane-bound metallopeptidase compare
Psest_4191 -2.1 -3.7 Transcriptional regulator compare
Psest_0962 -2.1 -8.4 DNA repair protein RecN conserved
Psest_0998 -2.1 -3.0 poly(A) polymerase compare
Psest_0515 -2.0 -4.8 rare lipoprotein A compare
Psest_3113 -2.0 -1.6 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2025 -1.9 -1.2 cold shock domain protein CspD compare
Psest_1999 -1.9 -1.4 pseudouridine synthase compare
Psest_2538 -1.9 -1.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3129 -1.9 -1.4 tyrosine recombinase XerD compare
Psest_2285 -1.9 -3.2 ATP-dependent protease La compare
Psest_2945 -1.9 -1.4 septum site-determining protein MinC compare
Psest_0919 -1.9 -2.7 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0309 -1.9 -1.2 RND family efflux transporter, MFP subunit compare
Psest_0558 -1.8 -1.0 urease, beta subunit compare
Psest_1653 -1.8 -10.0 transcription-repair coupling factor (mfd) conserved
Psest_2946 -1.7 -2.3 septum site-determining protein MinD compare
Psest_1008 -1.7 -1.3 hypothetical protein compare
Psest_2293 -1.7 -1.4 hypothetical protein compare
Psest_3850 -1.6 -0.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2067 -1.6 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2757 -1.6 -1.7 hypothetical protein compare
Psest_1656 -1.6 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3960 -1.6 -1.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3042 -1.6 -0.9 Nitrate reductase cytochrome c-type subunit compare
Psest_4098 -1.6 -3.3 Superfamily I DNA and RNA helicases compare
Psest_0958 -1.6 -5.8 Oligoketide cyclase/lipid transport protein compare
Psest_2243 -1.6 -1.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2718 -1.5 -1.7 hypothetical protein compare
Psest_0411 -1.5 -7.9 biotin synthetase compare
Psest_0280 -1.5 -9.3 homoserine O-acetyltransferase compare
Psest_2581 -1.5 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3884 -1.5 -0.9 Signal transduction histidine kinase compare
Psest_3476 -1.5 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4161 -1.4 -4.3 Flagellar basal body-associated protein compare
Psest_1532 -1.4 -3.1 DNA recombination-dependent growth factor C compare
Psest_0514 -1.4 -6.0 lytic murein transglycosylase B compare
Psest_1544 -1.4 -5.7 single-stranded-DNA-specific exonuclease RecJ conserved
Psest_2764 -1.4 -1.2 hypothetical protein compare
Psest_4142 -1.4 -1.4 hypothetical protein compare
Psest_1647 -1.4 -3.5 Lhr-like helicases compare
Psest_0260 -1.4 -1.5 Cell division protein compare
Psest_1869 -1.4 -6.7 ATP-dependent DNA helicase RecQ conserved
Psest_1235 -1.3 -4.1 Leucyl aminopeptidase compare
Psest_3767 -1.3 -3.3 tyrosine recombinase XerC compare
Psest_3377 -1.3 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3401 -1.3 -5.1 DNA repair protein RadA conserved
Psest_2235 -1.3 -6.1 DNA damage response nuclease (from data) conserved
Psest_3123 -1.3 -1.5 dihydroorotase, homodimeric type compare
Psest_3008 -1.3 -2.2 cobyric acid synthase CobQ compare
Psest_4009 -1.3 -2.3 conserverd hypothetical protein compare
Psest_3270 -1.2 -1.2 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0346 -1.2 -2.5 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1149 -1.2 -3.1 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_0401 -1.2 -1.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0212 -1.2 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_3881 -1.2 -1.1 hypothetical protein compare
Psest_3365 -1.2 -3.5 Predicted membrane protein compare
Psest_3697 -1.2 -1.8 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1643 -1.2 -1.1 hypothetical protein compare
Psest_3092 -1.1 -1.3 ribonuclease III, bacterial compare
Psest_2218 -1.1 -2.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_1029 -1.1 -2.3 Regulator of competence-specific genes compare
Psest_1498 -1.1 -2.1 tol-pal system-associated acyl-CoA thioesterase compare
Psest_0413 -1.1 -4.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0172 -1.1 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_0505 -1.0 -5.0 Putative effector of murein hydrolase compare
Psest_0028 -1.0 -3.5 Coproporphyrinogen III oxidase compare
Psest_1103 -1.0 -1.8 GTP-binding protein YchF compare
Psest_1910 -1.0 -2.5 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_2460 -1.0 -1.0 hypothetical protein compare
Psest_4044 -1.0 -1.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0277 -1.0 -0.7 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1005 -1.0 -3.0 sugar fermentation stimulation protein compare
Psest_1306 -1.0 -1.5 hypothetical protein compare
Psest_2651 -1.0 -2.6 DNA topoisomerase I, bacterial compare
Psest_4088 -1.0 -1.9 Transcriptional regulators compare
Psest_2976 -1.0 -1.1 hypothetical protein compare
Psest_3237 -1.0 -1.1 hypothetical protein compare
Psest_2648 -1.0 -1.3 hypothetical protein compare
Psest_3295 -1.0 -2.9 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_4363 -1.0 -4.8 ATPases involved in chromosome partitioning compare
Psest_0442 -1.0 -1.1 ATPases of the AAA+ class compare
Psest_0067 -0.9 -1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_1905 -0.9 -1.6 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3890 -0.9 -1.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1563 -0.9 -1.4 Protein of unknown function (DUF548). compare
Psest_1907 -0.9 -1.1 hypothetical protein compare
Psest_3400 -0.9 -0.8 Copper resistance protein D. compare
Psest_0279 -0.9 -3.2 methionine biosynthesis protein MetW compare
Psest_0225 -0.9 -2.0 Predicted permease, DMT superfamily compare
Psest_2114 -0.9 -3.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1631 -0.9 -1.4 Uncharacterized conserved small protein compare
Psest_1388 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2442 -0.9 -1.5 hypothetical protein compare
Psest_3736 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2271 -0.9 -1.6 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1295 -0.9 -3.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0909 -0.9 -3.4 hypothetical protein compare
Psest_3828 -0.9 -1.1 zinc-binding alcohol dehydrogenase family protein compare
Psest_1070 -0.9 -3.4 Predicted membrane protein compare
Psest_0367 -0.9 -1.4 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_2810 -0.9 -3.0 5'/3'-nucleotidase SurE compare
Psest_1567 -0.9 -2.8 Transcriptional regulator compare
Psest_4330 -0.9 -2.7 Protein of unknown function (DUF2909). compare
Psest_2957 -0.9 -2.5 competence protein ComEA helix-hairpin-helix repeat region compare
Psest_0537 -0.8 -1.1 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2775 -0.8 -2.0 Glycerol-3-phosphate dehydrogenase compare
Psest_1486 -0.8 -1.6 hypothetical protein compare
Psest_0632 -0.8 -1.8 hypothetical protein compare
Psest_3363 -0.8 -3.0 hypothetical protein compare
Psest_3456 -0.8 -1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_2236 -0.8 -5.1 Rad3-related DNA helicases conserved
Psest_0016 -0.8 -2.2 ectoine/hydroxyectoine ABC transporter, ATP-binding protein compare
Psest_1860 -0.8 -0.9 Uncharacterized conserved protein compare
Psest_2001 -0.8 -0.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4220 -0.8 -1.6 Protein of unknown function (DUF2782). compare
Psest_3950 -0.8 -3.1 D-tyrosyl-tRNA(Tyr) deacylase compare
Psest_2015 -0.8 -1.6 Type II secretory pathway, component PulD compare
Psest_3803 -0.8 -0.7 DNA repair protein radc compare
Psest_4103 -0.8 -1.0 AraC-type DNA-binding domain-containing proteins compare
Psest_1241 -0.8 -3.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_1372 -0.8 -1.8 Methyl-accepting chemotaxis protein compare
Psest_2907 -0.8 -0.6 Protein of unknown function (DUF3618). compare
Psest_3048 -0.8 -1.2 hypothetical protein compare
Psest_1371 -0.8 -1.6 hypothetical protein compare
Psest_3788 -0.8 -3.3 xanthine phosphoribosyltransferase compare
Psest_0869 -0.8 -1.4 Acetyltransferase (isoleucine patch superfamily) compare
Psest_1471 -0.8 -2.6 Predicted membrane protein compare
Psest_1320 -0.8 -3.3 phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein compare
Psest_1458 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0078 -0.7 -0.5 hypothetical protein compare
Psest_1886 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3766 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_4102 -0.7 -2.1 peroxiredoxin, Ohr subfamily compare
Psest_2857 -0.7 -4.0 Rad3-related DNA helicases conserved
Psest_4216 -0.7 -2.7 hypothetical protein compare
Psest_3545 -0.7 -1.9 clan AA aspartic protease, TIGR02281 family compare
Psest_0692 -0.7 -1.0 rRNA methylase, putative, group 3 compare
Psest_2850 -0.7 -0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1313 -0.7 -1.0 Uncharacterized conserved small protein compare
Psest_1326 -0.7 -2.1 Uncharacterized conserved protein compare
Psest_3922 -0.7 -2.5 Response regulator of citrate/malate metabolism compare
Psest_3819 -0.7 -2.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_4126 -0.7 -1.0 Predicted peroxiredoxins compare
Psest_4045 -0.7 -2.3 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_3918 -0.7 -3.7 hypothetical protein compare
Psest_2564 -0.7 -2.8 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3692 -0.7 -1.7 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3842 -0.7 -1.7 Transcriptional regulators compare
Psest_2268 -0.7 -1.9 Alcohol dehydrogenase, class IV compare
Psest_2736 -0.7 -2.1 Transposase and inactivated derivatives compare
Psest_2527 -0.7 -3.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3998 -0.7 -2.4 glutamate--cysteine ligase compare
Psest_2892 -0.7 -1.0 Transcriptional regulator compare
Psest_2023 -0.7 -1.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_4005 -0.7 -2.7 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1695 -0.7 -1.6 Tfp pilus assembly protein PilZ compare
Psest_0097 -0.7 -1.2 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3148 -0.7 -0.7 hypothetical protein compare
Psest_3537 -0.7 -2.9 hypothetical protein compare
Psest_1775 -0.7 -2.0 Predicted ATPase (AAA+ superfamily) compare
Psest_3399 -0.7 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_1953 -0.7 -4.7 deoxyguanosinetriphosphate triphosphohydrolase, putative compare
Psest_3202 -0.7 -1.7 Flavodoxins compare
Psest_0025 -0.7 -2.0 DNA protecting protein DprA compare
Psest_1293 -0.6 -0.9 VanZ like family. compare
Psest_3422 -0.6 -2.0 hypothetical protein compare
Psest_2401 -0.6 -2.1 Uncharacterized conserved protein compare
Psest_1659 -0.6 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1451 -0.6 -1.2 Uncharacterized ABC-type transport system, permease components compare
Psest_0385 -0.6 -1.3 Conserved secreted protein compare
Psest_3049 -0.6 -3.0 pseudouridine synthase compare
Psest_0276 -0.6 -2.7 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_4051 -0.6 -1.5 molybdenum-pterin binding domain compare
Psest_3561 -0.6 -2.9 Protein of unknown function (DUF2796). compare
Psest_2491 -0.6 -2.0 succinyl-CoA synthetase, beta subunit compare
Psest_3913 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Cisplatin in Pseudomonas stutzeri RCH2

For stress Cisplatin across organisms