Experiment set11H5 for Pseudomonas stutzeri RCH2

Compare to:

LB with Cisplatin 0.0016 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_2545 -5.4 -3.3 recombination protein RecR compare
Psest_3960 -5.0 -2.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1492 -4.9 -6.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0062 -4.8 -12.8 tryptophan synthase, alpha subunit compare
Psest_3648 -4.7 -9.0 anthranilate phosphoribosyltransferase compare
Psest_2584 -4.7 -9.0 Phosphoribosylanthranilate isomerase compare
Psest_3090 -4.7 -10.9 DNA repair protein RecO conserved
Psest_0063 -4.0 -13.9 tryptophan synthase, beta subunit compare
Psest_4219 -3.8 -2.6 DNA polymerase I compare
Psest_0004 -3.8 -15.7 recF protein conserved
Psest_3647 -3.7 -8.6 Indole-3-glycerol phosphate synthase compare
Psest_3338 -3.5 -1.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1296 -3.5 -11.7 excinuclease ABC, B subunit conserved
Psest_2872 -3.3 -2.1 protein RecA compare
Psest_2259 -3.2 -16.4 excinuclease ABC, C subunit conserved
Psest_3576 -3.2 -20.3 excinuclease ABC, A subunit conserved
Psest_1496 -3.1 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_3650 -2.7 -11.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2023 -2.4 -3.6 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2946 -2.4 -1.6 septum site-determining protein MinD compare
Psest_3767 -2.3 -5.3 tyrosine recombinase XerC compare
Psest_0962 -2.3 -9.2 DNA repair protein RecN conserved
Psest_4191 -2.3 -3.8 Transcriptional regulator compare
Psest_4098 -2.3 -4.7 Superfamily I DNA and RNA helicases compare
Psest_1653 -2.2 -14.0 transcription-repair coupling factor (mfd) conserved
Psest_3649 -2.1 -8.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3129 -2.0 -1.4 tyrosine recombinase XerD compare
Psest_3092 -2.0 -1.9 ribonuclease III, bacterial compare
Psest_2304 -1.9 -1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1663 -1.9 -4.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0515 -1.9 -4.9 rare lipoprotein A compare
Psest_3400 -1.9 -1.3 Copper resistance protein D. compare
Psest_3401 -1.8 -5.2 DNA repair protein RadA conserved
Psest_0161 -1.8 -2.1 Membrane-bound metallopeptidase compare
Psest_4103 -1.8 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_2025 -1.7 -1.1 cold shock domain protein CspD compare
Psest_0831 -1.7 -1.2 hypothetical protein compare
Psest_0028 -1.7 -4.7 Coproporphyrinogen III oxidase compare
Psest_0280 -1.7 -9.6 homoserine O-acetyltransferase compare
Psest_2285 -1.7 -3.1 ATP-dependent protease La compare
Psest_0411 -1.6 -7.6 biotin synthetase compare
Psest_1869 -1.5 -7.1 ATP-dependent DNA helicase RecQ conserved
Psest_1660 -1.5 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1366 -1.5 -1.6 hypothetical protein compare
Psest_0257 -1.5 -2.4 Predicted Zn-dependent peptidases compare
Psest_0845 -1.4 -0.8 hypothetical protein compare
Psest_1544 -1.4 -5.7 single-stranded-DNA-specific exonuclease RecJ conserved
Psest_1659 -1.4 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0547 -1.4 -2.9 Urease accessory protein UreF compare
Psest_3502 -1.4 -2.7 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_2766 -1.4 -1.1 hypothetical protein compare
Psest_3377 -1.4 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1087 -1.3 -1.1 uncharacterized peroxidase-related enzyme compare
Psest_0697 -1.3 -2.3 ribosomal protein L9 compare
Psest_1149 -1.3 -1.9 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_2122 -1.2 -1.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1056 -1.2 -1.6 2-isopropylmalate synthase, bacterial type compare
Psest_1643 -1.2 -0.7 hypothetical protein compare
Psest_0959 -1.2 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2235 -1.2 -5.4 DNA damage response nuclease (from data) conserved
Psest_4201 -1.1 -2.2 general secretion pathway protein F compare
Psest_4128 -1.1 -1.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3270 -1.1 -1.7 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3178 -1.1 -2.3 formyltetrahydrofolate deformylase compare
Psest_3056 -1.1 -3.4 hypothetical protein compare
Psest_0514 -1.1 -3.6 lytic murein transglycosylase B compare
Psest_2446 -1.1 -1.5 acetyl-CoA acetyltransferases compare
Psest_0919 -1.1 -1.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0601 -1.1 -1.6 hypothetical protein compare
Psest_2945 -1.0 -0.9 septum site-determining protein MinC compare
Psest_2809 -1.0 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1920 -1.0 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0186 -1.0 -3.1 Protein-disulfide isomerase compare
Psest_0958 -1.0 -3.9 Oligoketide cyclase/lipid transport protein compare
Psest_4152 -1.0 -2.7 flagellar basal-body rod protein FlgC compare
Psest_4044 -1.0 -1.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2671 -1.0 -2.3 Transcriptional regulator compare
Psest_3185 -1.0 -1.4 MoxR-like ATPases compare
Psest_2810 -1.0 -4.1 5'/3'-nucleotidase SurE compare
Psest_1491 -1.0 -1.6 Cold shock proteins compare
Psest_2714 -1.0 -1.4 7-cyano-7-deazaguanine reductase compare
Psest_2001 -1.0 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2454 -1.0 -2.0 Rhodanese-related sulfurtransferase compare
Psest_2067 -1.0 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_4078 -1.0 -1.3 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2229 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2110 -1.0 -2.9 hypothetical protein compare
Psest_3766 -1.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3890 -1.0 -1.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3816 -1.0 -0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_2236 -0.9 -6.1 Rad3-related DNA helicases conserved
Psest_1905 -0.9 -1.9 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3113 -0.9 -1.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0306 -0.9 -6.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1486 -0.9 -2.4 hypothetical protein compare
Psest_2527 -0.9 -3.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2591 -0.9 -1.8 3-isopropylmalate dehydratase, large subunit compare
Psest_2333 -0.9 -0.6 Protein of unknown function (DUF3359). compare
Psest_1525 -0.9 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_0172 -0.9 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1532 -0.9 -2.4 DNA recombination-dependent growth factor C compare
Psest_1631 -0.9 -1.3 Uncharacterized conserved small protein compare
Psest_3810 -0.9 -0.6 orotate phosphoribosyltransferase compare
Psest_0708 -0.9 -1.2 outer membrane assembly lipoprotein YfiO compare
Psest_4335 -0.9 -1.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1691 -0.9 -1.9 aminodeoxychorismate lyase compare
Psest_3107 -0.9 -2.5 uracil-DNA glycosylase compare
Psest_0609 -0.9 -1.0 hypothetical protein compare
Psest_1166 -0.9 -1.1 transcriptional regulator, ArgP family compare
Psest_4209 -0.9 -1.3 Uncharacterized conserved small protein compare
Psest_3408 -0.8 -2.5 Predicted transcriptional regulators compare
Psest_4049 -0.8 -1.1 hypothetical protein compare
Psest_2428 -0.8 -2.5 hypothetical protein compare
Psest_3995 -0.8 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3145 -0.8 -0.9 hypothetical protein compare
Psest_0313 -0.8 -2.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3070 -0.8 -1.4 3-oxoadipyl-CoA thiolase compare
Psest_3693 -0.8 -1.3 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2646 -0.8 -1.2 SOS regulatory protein LexA compare
Psest_2565 -0.8 -1.3 Transcriptional regulator compare
Psest_2530 -0.8 -2.6 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4363 -0.8 -3.5 ATPases involved in chromosome partitioning compare
Psest_3215 -0.8 -2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2104 -0.8 -1.2 IscR-regulated protein YhgI compare
Psest_2628 -0.8 -2.0 Flp pilus assembly protein, protease CpaA compare
Psest_1242 -0.8 -1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2457 -0.8 -2.1 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2749 -0.8 -3.1 Predicted transcriptional regulators compare
Psest_0537 -0.8 -1.3 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0412 -0.8 -4.1 8-amino-7-oxononanoate synthase compare
Psest_0310 -0.8 -1.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_4391 -0.8 -4.6 ATPases involved in chromosome partitioning compare
Psest_3419 -0.8 -3.5 Predicted transcriptional regulators compare
Psest_1910 -0.8 -1.5 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_0260 -0.8 -0.7 Cell division protein compare
Psest_2648 -0.8 -1.4 hypothetical protein compare
Psest_3564 -0.7 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_4166 -0.7 -2.7 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_4004 -0.7 -1.7 Uncharacterized conserved protein compare
Psest_0549 -0.7 -2.1 Predicted acetyltransferase compare
Psest_4100 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1750 -0.7 -1.4 Protein of unknown function (DUF2802). compare
Psest_1078 -0.7 -1.9 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_1421 -0.7 -1.8 Glutathione S-transferase compare
Psest_3301 -0.7 -1.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_0415 -0.7 -1.9 dethiobiotin synthase compare
Psest_4106 -0.7 -2.7 formate dehydrogenase, gamma subunit compare
Psest_0485 -0.7 -1.6 clan AA aspartic protease, TIGR02281 family compare
Psest_1874 -0.7 -2.2 AraC-type DNA-binding domain-containing proteins compare
Psest_1468 -0.7 -1.6 hypothetical protein compare
Psest_0279 -0.7 -2.6 methionine biosynthesis protein MetW compare
Psest_4102 -0.7 -1.5 peroxiredoxin, Ohr subfamily compare
Psest_3071 -0.7 -2.3 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit compare
Psest_1279 -0.7 -1.7 hypothetical protein compare
Psest_2605 -0.7 -1.2 transcriptional activator RfaH compare
Psest_2991 -0.7 -2.6 hypothetical protein compare
Psest_4195 -0.7 -3.2 general secretion pathway protein L compare
Psest_2048 -0.7 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2578 -0.7 -4.1 O-succinylhomoserine sulfhydrylase compare
Psest_2729 -0.7 -3.6 Signal transduction histidine kinase compare
Psest_0988 -0.7 -1.9 Protein of unknown function (DUF2845). compare
Psest_1035 -0.7 -3.3 hypothetical protein compare
Psest_2404 -0.7 -3.5 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases compare
Psest_1524 -0.7 -1.7 Sel1 repeat. compare
Psest_3343 -0.7 -2.2 Predicted periplasmic protein compare
Psest_0773 -0.7 -2.1 Cytosine deaminase and related metal-dependent hydrolases compare
Psest_0684 -0.7 -2.0 GTP-binding protein HflX compare
Psest_0557 -0.7 -3.5 Urease (EC 3.5.1.5) (from data) compare
Psest_2540 -0.7 -2.6 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3563 -0.7 -2.6 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_1090 -0.7 -2.9 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0191 -0.7 -0.4 PAS domain S-box compare
Psest_3060 -0.7 -1.6 hypothetical protein compare
Psest_3151 -0.7 -1.8 hypothetical protein compare
Psest_3476 -0.7 -0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3692 -0.7 -1.6 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_2411 -0.7 -3.0 PAS domain S-box compare
Psest_1337 -0.7 -2.5 Methyl-accepting chemotaxis protein compare
Psest_1671 -0.7 -1.9 DNA internalization-related competence protein ComEC/Rec2 compare
Psest_4325 -0.7 -1.4 hypothetical protein compare
Psest_3575 -0.7 -2.8 Arabinose efflux permease compare
Psest_1241 -0.7 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2164 -0.7 -3.4 Uncharacterized conserved protein compare
Psest_2761 -0.7 -1.7 Uncharacterized protein with SCP/PR1 domains compare
Psest_3522 -0.7 -2.0 3-hydroxybutyrate dehydrogenase compare
Psest_3852 -0.6 -3.0 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Psest_1794 -0.6 -2.2 Flagellar motor protein compare
Psest_0097 -0.6 -0.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0061 -0.6 -1.0 hypothetical protein compare
Psest_1656 -0.6 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_4088 -0.6 -1.5 Transcriptional regulators compare
Psest_2857 -0.6 -3.7 Rad3-related DNA helicases conserved
Psest_1538 -0.6 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1886 -0.6 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1772 -0.6 -1.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2184 -0.6 -2.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_4252 -0.6 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3031 -0.6 -0.4 hypothetical protein compare
Psest_0114 -0.6 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_3896 -0.6 -1.4 arsenite-activated ATPase ArsA compare


Specific Phenotypes

For 11 genes in this experiment

For stress Cisplatin in Pseudomonas stutzeri RCH2

For stress Cisplatin across organisms