Experiment set11H46 for Pseudomonas stutzeri RCH2

Compare to:

LB with Neomycin trisulfate salt hydrate 0.004 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Psest_3884 +5.1 8.1 Signal transduction histidine kinase compare
Psest_3883 +3.8 16.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3045 +2.8 2.8 Cold shock proteins compare
Psest_1840 +2.7 23.7 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4003 +2.6 8.2 TIGR00153 family protein compare
Psest_0498 +2.5 3.8 ribosome small subunit-dependent GTPase A compare
Psest_3305 +2.5 13.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3303 +2.5 10.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2712 +2.4 8.9 Surface lipoprotein compare
Psest_3304 +2.4 8.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2232 +2.3 18.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3307 +2.2 10.5 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3731 +2.2 14.6 exopolyphosphatase compare
Psest_0993 +2.2 12.4 Glucose-6-phosphate isomerase compare
Psest_3351 +2.2 10.0 peptide chain release factor 3 compare
Psest_3936 +2.1 6.5 ATP-dependent protease HslVU, peptidase subunit compare
Psest_0722 +2.0 9.1 Predicted ATPase compare
Psest_2066 +2.0 4.0 ABC-type uncharacterized transport system, permease component compare
Psest_0693 +1.9 16.0 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2288 +1.9 5.1 trigger factor compare
Psest_1661 +1.8 3.3 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3174 +1.8 11.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0466 +1.7 5.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2530 +1.7 6.1 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0482 +1.7 4.8 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_1957 +1.7 10.6 outer membrane porin, OprD family. compare
Psest_2527 +1.7 7.9 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0999 +1.7 4.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3047 +1.7 2.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3377 +1.7 2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3937 +1.7 4.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3790 +1.7 9.5 Cytochrome c5 compare
Psest_3720 +1.6 12.0 penicillin-binding protein, 1A family compare
Psest_1659 +1.6 3.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3226 +1.6 2.2 Predicted membrane protein compare
Psest_3762 +1.6 3.8 iron donor protein CyaY compare
Psest_1752 +1.6 3.2 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0459 +1.6 10.2 Predicted carbamoyl transferase, NodU family compare
Psest_3306 +1.6 6.3 conserved hypothetical integral membrane protein compare
Psest_3882 +1.5 6.8 Opacity protein and related surface antigens compare
Psest_4315 +1.5 3.1 ABC-type metal ion transport system, permease component compare
Psest_0028 +1.5 5.6 Coproporphyrinogen III oxidase compare
Psest_2229 +1.5 3.0 Uncharacterized protein conserved in bacteria compare
Psest_4335 +1.5 3.4 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3828 +1.5 2.8 zinc-binding alcohol dehydrogenase family protein compare
Psest_3177 +1.4 2.9 hypothetical protein compare
Psest_1974 +1.4 2.2 integration host factor, alpha subunit compare
Psest_2134 +1.4 9.1 amino acid carrier protein compare
Psest_1920 +1.4 1.8 Uncharacterized protein conserved in bacteria compare
Psest_3670 +1.4 8.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3178 +1.3 3.2 formyltetrahydrofolate deformylase compare
Psest_0737 +1.3 1.6 Cu(I)-responsive transcriptional regulator compare
Psest_2810 +1.3 5.5 5'/3'-nucleotidase SurE compare
Psest_1725 +1.3 8.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3927 +1.3 4.2 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2531 +1.3 8.6 cytochrome c oxidase accessory protein FixG compare
Psest_4274 +1.3 4.4 hypothetical protein compare
Psest_2500 +1.3 2.0 hypothetical protein compare
Psest_1001 +1.2 2.4 hypothetical protein compare
Psest_3112 +1.2 4.5 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1249 +1.2 5.0 serine O-acetyltransferase compare
Psest_1809 +1.2 6.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1048 +1.2 6.4 Uncharacterized paraquat-inducible protein A compare
Psest_3136 +1.2 4.8 Putative Mg2+ and Co2+ transporter CorB compare
Psest_0457 +1.2 3.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3399 +1.2 1.1 Uncharacterized protein conserved in bacteria compare
Psest_3476 +1.2 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2892 +1.2 3.7 Transcriptional regulator compare
Psest_1656 +1.2 2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2000 +1.2 4.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3114 +1.2 5.5 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3113 +1.1 2.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2022 +1.1 2.7 ADP-ribose pyrophosphatase compare
Psest_0717 +1.1 8.8 Protein of unknown function (DUF1631). compare
Psest_4088 +1.1 3.7 Transcriptional regulators compare
Psest_0170 +1.1 4.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_0538 +1.1 10.6 Signal transduction histidine kinase compare
Psest_3115 +1.1 4.4 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1837 +1.1 3.4 Endoglucanase compare
Psest_4103 +1.1 1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_1721 +1.1 3.4 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3247 +1.1 1.8 Uncharacterized membrane protein compare
Psest_3367 +1.1 1.7 translation initation factor SUI1, putative, prokaryotic compare
Psest_1540 +1.1 1.9 biotin-dependent carboxylase uncharacterized domain compare
Psest_2405 +1.1 2.7 NAD-dependent protein deacetylases, SIR2 family compare
Psest_1655 +1.1 3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2316 +1.0 6.7 phosphoenolpyruvate synthase compare
Psest_1815 +1.0 6.9 pseudaminic acid synthase compare
Psest_0678 +1.0 4.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_2923 +1.0 1.8 hypothetical protein compare
Psest_3490 +1.0 2.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3217 +1.0 9.4 PAS domain S-box compare
Psest_3022 +1.0 2.4 Predicted membrane protein compare
Psest_1772 +1.0 3.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3990 +1.0 4.6 PAP2 superfamily. compare
Psest_2532 +1.0 3.0 Uncharacterized protein conserved in bacteria compare
Psest_3064 +1.0 2.2 hypothetical protein compare
Psest_3117 +1.0 3.5 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1049 +1.0 3.4 Uncharacterized paraquat-inducible protein A compare
Psest_1805 +1.0 1.2 integration host factor, beta subunit compare
Psest_1947 +1.0 1.1 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1888 +0.9 1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1488 +0.9 7.1 outer membrane porin, OprD family. compare
Psest_2719 +0.9 2.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1484 +0.9 6.0 Thiol-disulfide isomerase and thioredoxins compare
Psest_1595 +0.9 1.4 Copper chaperone compare
Psest_1907 +0.9 1.5 hypothetical protein compare
Psest_2894 +0.9 2.2 addiction module antidote protein, HigA family compare
Psest_1050 +0.9 6.4 Paraquat-inducible protein B compare
Psest_0462 +0.9 8.1 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1718 +0.9 3.1 flagellar hook-basal body complex protein FliE compare
Psest_1723 +0.9 4.3 flagellar export protein FliJ compare
Psest_2332 +0.9 5.4 Predicted acetyltransferase compare
Psest_1722 +0.9 5.3 flagellar protein export ATPase FliI compare
Psest_0066 +0.9 1.9 Protein of unknown function (DUF3060). compare
Psest_4164 +0.9 2.8 flagellar biosynthetic protein FliS compare
Psest_2015 +0.9 1.8 Type II secretory pathway, component PulD compare
Psest_0503 +0.9 2.1 Acyl dehydratase compare
Psest_1810 +0.9 5.9 UDP-N-acetylglucosamine 4,6-dehydratase compare
Psest_0529 +0.9 4.7 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1280 +0.9 6.2 TonB-dependent copper receptor compare
Psest_1121 +0.9 4.1 Hypoxanthine-guanine phosphoribosyltransferase compare
Psest_3354 +0.9 2.5 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_4382 +0.9 6.9 hypothetical protein compare
Psest_1486 +0.9 2.5 hypothetical protein compare
Psest_3998 +0.8 4.5 glutamate--cysteine ligase compare
Psest_2330 +0.8 5.3 2-dehydropantoate 2-reductase compare
Psest_1762 +0.8 2.1 cytochrome c-type biogenesis protein CcmI compare
Psest_4280 +0.8 2.1 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0417 +0.8 2.3 Acyl-CoA dehydrogenases compare
Psest_1734 +0.8 2.9 flagellar biosynthetic protein FliR compare
Psest_2238 +0.8 1.9 hypothetical protein compare
Psest_0592 +0.8 2.7 hypothetical protein compare
Psest_3573 +0.8 2.9 dTDP-4-dehydrorhamnose reductase compare
Psest_2327 +0.8 3.7 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0867 +0.8 1.1 hypothetical protein compare
Psest_0684 +0.8 3.1 GTP-binding protein HflX compare
Psest_1878 +0.8 1.5 Uncharacterized protein conserved in bacteria compare
Psest_2314 +0.8 3.8 Mg2+ and Co2+ transporters compare
Psest_0367 +0.8 1.6 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_1460 +0.8 2.9 Cytochrome c553 compare
Psest_3816 +0.8 0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_4323 +0.8 5.6 Predicted acyltransferases compare
Psest_2853 +0.8 3.0 hypothetical protein compare
Psest_1737 +0.8 2.3 flagellar biosynthesis protein FlhA compare
Psest_1013 +0.8 2.5 phosphoribosylamine--glycine ligase compare
Psest_1508 +0.8 4.6 succinate CoA transferases compare
Psest_3908 +0.8 1.2 Cytochrome c553 compare
Psest_0959 +0.8 2.0 Uncharacterized protein conserved in bacteria compare
Psest_3973 +0.8 1.4 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2260 +0.8 6.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3216 +0.8 7.1 diguanylate cyclase (GGDEF) domain compare
Psest_2334 +0.8 5.3 Uncharacterized protein conserved in bacteria compare
Psest_4170 +0.8 1.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2960 +0.8 3.0 flagellar rod assembly protein/muramidase FlgJ compare
Psest_0164 +0.8 0.7 Glutaredoxin, GrxC family compare
Psest_0320 +0.8 2.7 ABC-type multidrug transport system, ATPase component compare
Psest_2317 +0.8 3.4 Uncharacterized protein conserved in bacteria compare
Psest_1635 +0.8 6.7 Signal transduction histidine kinase compare
Psest_2811 +0.7 4.3 Uncharacterized conserved protein compare
Psest_1782 +0.7 1.7 Predicted transcriptional regulators compare
Psest_3395 +0.7 1.0 hypothetical protein compare
Psest_2104 +0.7 1.2 IscR-regulated protein YhgI compare
Psest_0511 +0.7 0.7 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0497 +0.7 3.7 Flagellar motor protein compare
Psest_3853 +0.7 1.5 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0461 +0.7 3.7 Glycosyltransferase involved in LPS biosynthesis compare
Psest_0416 +0.7 2.0 hypothetical protein compare
Psest_2579 +0.7 3.2 amidophosphoribosyltransferase compare
Psest_2963 +0.7 2.9 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_0402 +0.7 1.4 glycosyltransferase, MGT family compare
Psest_3016 +0.7 5.1 TonB-dependent vitamin B12 receptor compare
Psest_0648 +0.7 4.8 Lysine/ornithine N-monooxygenase compare
Psest_3148 +0.7 1.0 hypothetical protein compare
Psest_1994 +0.7 2.0 Amidases related to nicotinamidase compare
Psest_1541 +0.7 3.9 TIGR00370 family protein compare
Psest_4293 +0.7 3.9 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1719 +0.7 2.9 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_2249 +0.7 3.0 Protein-tyrosine-phosphatase compare
Psest_1720 +0.7 3.4 flagellar motor switch protein FliG compare
Psest_1999 +0.7 0.5 pseudouridine synthase compare
Psest_0316 +0.7 1.7 Cytochrome c556 compare
Psest_2965 +0.7 5.3 fagellar hook-basal body proteins compare
Psest_1904 +0.7 2.6 Arabinose efflux permease compare
Psest_3127 +0.7 3.0 Uncharacterized conserved protein compare
Psest_2520 +0.7 0.9 Predicted SAM-dependent methyltransferase compare
Psest_0970 +0.7 1.0 hypothetical protein compare
Psest_2551 +0.7 4.4 1-aminocyclopropane-1-carboxylate deaminase compare
Psest_3850 +0.7 0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4298 +0.7 0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1735 +0.7 3.0 flagellar biosynthetic protein FlhB compare
Psest_3701 +0.7 2.0 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_3484 +0.7 2.4 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0862 +0.7 1.3 Glycosidases compare
Psest_2369 +0.7 1.8 Transcriptional regulator compare
Psest_3669 +0.7 2.3 Uncharacterized protein affecting Mg2+/Co2+ transport compare
Psest_1816 +0.7 2.2 hypothetical protein compare
Psest_2425 +0.7 2.0 Trk-type K+ transport systems, membrane components compare
Psest_1307 +0.7 2.7 Dienelactone hydrolase and related enzymes compare
Psest_0734 +0.7 2.1 RND family efflux transporter, MFP subunit compare


Specific Phenotypes

For 6 genes in this experiment

For stress Neomycin trisulfate salt hydrate in Pseudomonas stutzeri RCH2

For stress Neomycin trisulfate salt hydrate across organisms