Experiment set11H45 for Pseudomonas stutzeri RCH2

Compare to:

LB with Neomycin trisulfate salt hydrate 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_1492 -4.4 -6.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3648 -4.2 -11.0 anthranilate phosphoribosyltransferase compare
Psest_0998 -4.2 -4.1 poly(A) polymerase compare
Psest_2584 -3.7 -7.1 Phosphoribosylanthranilate isomerase compare
Psest_0062 -3.6 -17.2 tryptophan synthase, alpha subunit compare
Psest_3647 -3.5 -9.3 Indole-3-glycerol phosphate synthase compare
Psest_0063 -3.4 -15.3 tryptophan synthase, beta subunit compare
Psest_1496 -3.3 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_0514 -3.1 -9.5 lytic murein transglycosylase B compare
Psest_1870 -3.0 -1.4 Transcriptional regulators compare
Psest_0725 -2.9 -2.6 Negative regulator of beta-lactamase expression compare
Psest_3650 -2.9 -16.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1471 -2.8 -8.6 Predicted membrane protein compare
Psest_2025 -2.7 -1.3 cold shock domain protein CspD compare
Psest_4219 -2.5 -2.9 DNA polymerase I compare
Psest_3322 -2.4 -16.8 TIGR02099 family protein compare
Psest_1884 -2.3 -2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0193 -2.3 -1.7 conserved hypothetical protein compare
Psest_0533 -2.2 -6.1 Sel1 repeat. compare
Psest_1012 -2.2 -4.9 Signal transduction histidine kinase compare
Psest_0309 -2.1 -1.4 RND family efflux transporter, MFP subunit compare
Psest_0515 -2.1 -5.9 rare lipoprotein A compare
Psest_3565 -2.1 -1.9 hypothetical protein compare
Psest_3316 -2.1 -8.6 Predicted P-loop-containing kinase compare
Psest_0516 -2.1 -8.6 D-alanyl-D-alanine carboxypeptidase compare
Psest_0310 -2.0 -4.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1824 -1.9 -3.1 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2293 -1.8 -1.3 hypothetical protein compare
Psest_0718 -1.8 -3.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_1804 -1.8 -1.2 Superfamily II DNA and RNA helicases compare
Psest_3031 -1.8 -1.0 hypothetical protein compare
Psest_2285 -1.7 -3.0 ATP-dependent protease La compare
Psest_0719 -1.7 -6.1 Uncharacterized protein conserved in bacteria compare
Psest_0691 -1.7 -9.8 ribonuclease R compare
Psest_0697 -1.6 -2.8 ribosomal protein L9 compare
Psest_3767 -1.6 -5.0 tyrosine recombinase XerC compare
Psest_2001 -1.6 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2872 -1.6 -1.4 protein RecA compare
Psest_2122 -1.5 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3718 -1.5 -5.7 Tfp pilus assembly protein PilN compare
Psest_1882 -1.5 -6.3 Signal transduction histidine kinase compare
Psest_0279 -1.5 -4.7 methionine biosynthesis protein MetW compare
Psest_2591 -1.5 -2.0 3-isopropylmalate dehydratase, large subunit compare
Psest_2120 -1.4 -2.3 Transcriptional regulator compare
Psest_3042 -1.4 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_2766 -1.4 -1.0 hypothetical protein compare
Psest_0501 -1.4 -3.6 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_0191 -1.4 -0.9 PAS domain S-box compare
Psest_3383 -1.4 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_0280 -1.4 -8.2 homoserine O-acetyltransferase compare
Psest_2067 -1.4 -1.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2945 -1.4 -1.2 septum site-determining protein MinC compare
Psest_0842 -1.4 -1.6 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_4338 -1.4 -4.5 Fe2+-dicitrate sensor, membrane component compare
Psest_3100 -1.3 -4.0 RNA polymerase sigma factor RpoE compare
Psest_3338 -1.3 -1.3 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2756 -1.3 -1.3 hypothetical protein compare
Psest_2613 -1.3 -1.5 hypothetical protein compare
Psest_4191 -1.3 -2.6 Transcriptional regulator compare
Psest_3128 -1.3 -3.6 Protein-disulfide isomerase compare
Psest_0257 -1.3 -1.6 Predicted Zn-dependent peptidases compare
Psest_0508 -1.3 -5.2 gamma-glutamyl phosphate reductase compare
Psest_2114 -1.3 -4.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0922 -1.2 -2.4 alkylhydroperoxidase AhpD family core domain compare
Psest_1679 -1.2 -1.8 ribonuclease, Rne/Rng family compare
Psest_1354 -1.2 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0186 -1.2 -3.9 Protein-disulfide isomerase compare
Psest_0846 -1.2 -2.6 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1161 -1.2 -2.3 E3 Ubiquitin ligase. compare
Psest_2585 -1.2 -0.6 pseudouridylate synthase I compare
Psest_2358 -1.2 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3502 -1.2 -2.1 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1306 -1.2 -1.1 hypothetical protein compare
Psest_3649 -1.2 -5.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1950 -1.2 -8.0 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family compare
Psest_3047 -1.2 -0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2538 -1.2 -1.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3295 -1.2 -2.7 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_1704 -1.2 -1.3 Dehydrogenases (flavoproteins) compare
Psest_2752 -1.2 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0297 -1.2 -2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1058 -1.2 -2.3 ribosomal-protein-alanine acetyltransferase compare
Psest_2946 -1.1 -2.4 septum site-determining protein MinD compare
Psest_1295 -1.1 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2718 -1.1 -1.0 hypothetical protein compare
Psest_1313 -1.1 -1.5 Uncharacterized conserved small protein compare
Psest_1505 -1.1 -1.6 Organic radical activating enzymes compare
Psest_1535 -1.1 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_0558 -1.1 -0.8 urease, beta subunit compare
Psest_3237 -1.1 -1.2 hypothetical protein compare
Psest_0575 -1.1 -0.8 HrpA-like helicases compare
Psest_2096 -1.1 -2.8 Domain of unknown function (DUF1883). compare
Psest_2646 -1.1 -1.2 SOS regulatory protein LexA compare
Psest_3788 -1.1 -3.0 xanthine phosphoribosyltransferase compare
Psest_2586 -1.1 -8.5 FimV N-terminal domain compare
Psest_0212 -1.1 -1.9 exodeoxyribonuclease V, gamma subunit compare
Psest_4005 -1.1 -3.4 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1843 -1.1 -1.6 Uncharacterized Fe-S protein compare
Psest_2975 -1.1 -2.2 tRNA_Arg_CCT compare
Psest_0094 -1.1 -2.7 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2605 -1.1 -1.8 transcriptional activator RfaH compare
Psest_0491 -1.1 -6.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1162 -1.1 -1.7 Spermidine synthase compare
Psest_1540 -1.1 -1.2 biotin-dependent carboxylase uncharacterized domain compare
Psest_1152 -1.1 -1.9 hypothetical protein compare
Psest_1665 -1.0 -3.4 hypothetical protein compare
Psest_2555 -1.0 -5.1 hypothetical protein compare
Psest_3816 -1.0 -0.9 DNA-directed RNA polymerase, omega subunit compare
Psest_0260 -1.0 -1.3 Cell division protein compare
Psest_3904 -1.0 -1.4 hypothetical protein compare
Psest_3890 -1.0 -1.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3744 -1.0 -3.4 Disulfide bond formation protein DsbB compare
Psest_0299 -1.0 -2.5 Chemotaxis signal transduction protein compare
Psest_0015 -1.0 -2.2 Tetratricopeptide repeat. compare
Psest_0844 -1.0 -3.4 High-affinity Fe2+/Pb2+ permease compare
Psest_2720 -1.0 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0743 -1.0 -3.7 adenosine deaminase compare
Psest_1031 -1.0 -4.9 Uncharacterized protein conserved in bacteria compare
Psest_0172 -1.0 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_1695 -1.0 -2.4 Tfp pilus assembly protein PilZ compare
Psest_2590 -1.0 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_0521 -1.0 -4.9 lytic murein transglycosylase compare
Psest_4001 -1.0 -2.7 acetylornithine deacetylase (ArgE) compare
Psest_2523 -1.0 -3.6 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_0442 -1.0 -2.0 ATPases of the AAA+ class compare
Psest_3013 -1.0 -2.0 cobyrinic acid a,c-diamide synthase compare
Psest_3732 -1.0 -4.9 polyphosphate kinase 1 compare
Psest_3716 -1.0 -5.8 Tfp pilus assembly protein PilP compare
Psest_3395 -1.0 -0.9 hypothetical protein compare
Psest_2578 -1.0 -5.5 O-succinylhomoserine sulfhydrylase compare
Psest_0958 -1.0 -3.9 Oligoketide cyclase/lipid transport protein compare
Psest_1242 -1.0 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0843 -1.0 -5.5 hypothetical protein compare
Psest_0411 -0.9 -4.6 biotin synthetase compare
Psest_3810 -0.9 -1.2 orotate phosphoribosyltransferase compare
Psest_1863 -0.9 -2.3 hypothetical protein compare
Psest_1856 -0.9 -2.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3317 -0.9 -3.3 Phosphotransferase System HPr (HPr) Family compare
Psest_0334 -0.9 -2.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1905 -0.9 -1.7 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_1826 -0.9 -3.5 hypothetical protein compare
Psest_4209 -0.9 -1.8 Uncharacterized conserved small protein compare
Psest_2405 -0.9 -1.3 NAD-dependent protein deacetylases, SIR2 family compare
Psest_0708 -0.9 -1.1 outer membrane assembly lipoprotein YfiO compare
Psest_0409 -0.9 -2.3 Putative homoserine kinase type II (protein kinase fold) compare
Psest_1663 -0.9 -1.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0073 -0.9 -2.7 ABC-type multidrug transport system, ATPase and permease components compare
Psest_4044 -0.9 -1.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0259 -0.9 -0.9 cell division ATP-binding protein FtsE compare
Psest_1087 -0.9 -0.8 uncharacterized peroxidase-related enzyme compare
Psest_0097 -0.9 -1.3 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0312 -0.9 -3.3 Superfamily II DNA and RNA helicases compare
Psest_1532 -0.9 -1.9 DNA recombination-dependent growth factor C compare
Psest_3449 -0.9 -1.3 DJ-1 family protein compare
Psest_1260 -0.9 -2.9 type IV pilus biogenesis/stability protein PilW compare
Psest_2308 -0.9 -0.7 Predicted Fe-S protein compare
Psest_0175 -0.9 -4.0 Xaa-Pro aminopeptidase compare
Psest_3715 -0.8 -5.7 type IV pilus secretin (or competence protein) PilQ compare
Psest_3809 -0.8 -2.2 hypothetical protein compare
Psest_0113 -0.8 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_3286 -0.8 -2.8 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_0952 -0.8 -1.1 Uncharacterized conserved protein compare
Psest_1516 -0.8 -1.8 Uncharacterized lipoprotein compare
Psest_3270 -0.8 -1.5 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_4298 -0.8 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1428 -0.8 -2.1 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1120 -0.8 -2.6 uracil phosphoribosyltransferase compare
Psest_3296 -0.8 -0.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0662 -0.8 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3960 -0.8 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0066 -0.8 -1.3 Protein of unknown function (DUF3060). compare
Psest_0506 -0.8 -1.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_3288 -0.8 -5.1 type IV-A pilus assembly ATPase PilB compare
Psest_3938 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1902 -0.8 -2.7 hypothetical protein compare
Psest_3954 -0.8 -1.7 Small protein A (tmRNA-binding) compare
Psest_1145 -0.8 -2.6 Predicted methylated DNA-protein cysteine methyltransferase compare
Psest_3988 -0.8 -3.2 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3170 -0.8 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0571 -0.8 -3.9 Transcriptional regulators compare
Psest_4043 -0.8 -1.2 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0152 -0.8 -2.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_1551 -0.8 -2.0 Integral membrane protein, interacts with FtsH compare
Psest_1776 -0.8 -3.8 Glutathione S-transferase compare
Psest_1872 -0.8 -2.1 selT/selW/selH selenoprotein domain compare
Psest_4330 -0.8 -2.0 Protein of unknown function (DUF2909). compare
Psest_3697 -0.8 -1.4 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3375 -0.8 -3.7 prepilin-type N-terminal cleavage/methylation domain compare
Psest_4172 -0.8 -4.1 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
Psest_2773 -0.8 -3.2 glycerol kinase compare
Psest_0101 -0.8 -2.1 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_1504 -0.8 -2.3 tol-pal system protein YbgF compare
Psest_2899 -0.8 -0.8 hypothetical protein compare
Psest_1326 -0.8 -1.6 Uncharacterized conserved protein compare
Psest_0687 -0.7 -2.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2343 -0.7 -3.0 Mg-dependent DNase compare
Psest_2643 -0.7 -1.4 Beta-glucosidase-related glycosidases compare
Psest_1677 -0.7 -1.5 Protein-tyrosine-phosphatase compare
Psest_3862 -0.7 -5.2 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1763 -0.7 -1.5 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Neomycin trisulfate salt hydrate in Pseudomonas stutzeri RCH2

For stress Neomycin trisulfate salt hydrate across organisms