Experiment set11H4 for Pseudomonas stutzeri RCH2

Compare to:

LB with Paraquat dichloride 0.015 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0062 -5.3 -9.6 tryptophan synthase, alpha subunit compare
Psest_2862 -5.1 -7.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3648 -5.1 -7.8 anthranilate phosphoribosyltransferase compare
Psest_2584 -5.1 -4.5 Phosphoribosylanthranilate isomerase compare
Psest_2011 -5.0 -8.3 Predicted permease compare
Psest_3647 -4.8 -6.7 Indole-3-glycerol phosphate synthase compare
Psest_3226 -4.7 -0.8 Predicted membrane protein compare
Psest_0063 -4.7 -11.3 tryptophan synthase, beta subunit compare
Psest_1492 -4.7 -7.1 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3938 -4.3 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_0411 -4.2 -13.5 biotin synthetase compare
Psest_2088 -4.1 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0415 -4.1 -4.6 dethiobiotin synthase compare
Psest_0412 -4.1 -13.4 8-amino-7-oxononanoate synthase compare
Psest_2090 -4.0 -2.6 Protein of unknown function (DUF2970). compare
Psest_0413 -4.0 -7.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0520 -4.0 -0.7 hypothetical protein compare
Psest_0414 -3.9 -4.7 biotin biosynthesis protein BioC compare
Psest_2863 -3.8 -6.5 Transcriptional regulator compare
Psest_0306 -3.6 -19.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_4219 -3.5 -2.0 DNA polymerase I compare
Psest_0542 -3.5 -10.7 AMP nucleosidase compare
Psest_0015 -3.3 -2.6 Tetratricopeptide repeat. compare
Psest_1012 -3.3 -2.3 Signal transduction histidine kinase compare
Psest_3395 -3.3 -0.8 hypothetical protein compare
Psest_0144 -3.2 -7.3 Fe-S cluster protector protein compare
Psest_2037 -3.2 -6.7 uroporphyrin-III C-methyltransferase compare
Psest_2304 -3.0 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4406 -3.0 -1.2 hypothetical protein compare
Psest_3862 -2.9 -13.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3458 -2.9 -3.2 hypothetical protein compare
Psest_2682 -2.9 -5.5 fumarate hydratase, class II compare
Psest_4201 -2.9 -2.3 general secretion pathway protein F compare
Psest_2893 -2.8 -10.4 Arabinose efflux permease compare
Psest_0719 -2.8 -4.8 Uncharacterized protein conserved in bacteria compare
Psest_3937 -2.8 -1.5 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3767 -2.8 -4.2 tyrosine recombinase XerC compare
Psest_4078 -2.7 -1.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3979 -2.7 -2.2 Fructose-2,6-bisphosphatase compare
Psest_2333 -2.6 -0.8 Protein of unknown function (DUF3359). compare
Psest_1679 -2.6 -1.7 ribonuclease, Rne/Rng family compare
Psest_2308 -2.6 -0.9 Predicted Fe-S protein compare
Psest_0028 -2.5 -3.8 Coproporphyrinogen III oxidase compare
Psest_3878 -2.5 -2.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2243 -2.5 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0952 -2.4 -2.5 Uncharacterized conserved protein compare
Psest_0697 -2.4 -2.2 ribosomal protein L9 compare
Psest_0537 -2.4 -2.1 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0575 -2.4 -0.7 HrpA-like helicases compare
Psest_1388 -2.4 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0846 -2.4 -2.7 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1031 -2.3 -8.2 Uncharacterized protein conserved in bacteria compare
Psest_0485 -2.3 -3.0 clan AA aspartic protease, TIGR02281 family compare
Psest_1999 -2.3 -1.2 pseudouridine synthase compare
Psest_1518 -2.3 -1.9 tRNA_Ser_CGA compare
Psest_0397 -2.3 -8.6 Small-conductance mechanosensitive channel compare
Psest_0969 -2.3 -1.6 transcription elongation factor GreA compare
Psest_1056 -2.3 -1.5 2-isopropylmalate synthase, bacterial type compare
Psest_3565 -2.2 -0.9 hypothetical protein compare
Psest_0662 -2.2 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0842 -2.2 -1.7 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3148 -2.2 -0.9 hypothetical protein compare
Psest_2590 -2.2 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0844 -2.1 -4.1 High-affinity Fe2+/Pb2+ permease compare
Psest_3303 -2.1 -5.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4098 -2.1 -3.2 Superfamily I DNA and RNA helicases compare
Psest_3351 -2.1 -3.2 peptide chain release factor 3 compare
Psest_1326 -2.1 -3.6 Uncharacterized conserved protein compare
Psest_0852 -2.1 -4.0 glucose-6-phosphate 1-dehydrogenase compare
Psest_1782 -2.1 -1.8 Predicted transcriptional regulators compare
Psest_3084 -2.1 -1.7 methyltransferase, putative compare
Psest_0843 -2.1 -9.4 hypothetical protein compare
Psest_2017 -2.0 -3.8 Predicted acyltransferase compare
Psest_0958 -2.0 -6.1 Oligoketide cyclase/lipid transport protein compare
Psest_0312 -2.0 -5.8 Superfamily II DNA and RNA helicases compare
Psest_3745 -2.0 -2.8 Uncharacterized enzyme of heme biosynthesis compare
Psest_0547 -2.0 -2.8 Urease accessory protein UreF compare
Psest_2945 -2.0 -0.8 septum site-determining protein MinC compare
Psest_0993 -2.0 -7.1 Glucose-6-phosphate isomerase compare
Psest_1357 -2.0 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0401 -2.0 -1.6 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_3518 -2.0 -1.0 Transcriptional regulators compare
Psest_1814 -1.9 -13.1 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3305 -1.9 -6.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1103 -1.8 -2.4 GTP-binding protein YchF compare
Psest_3927 -1.8 -3.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3650 -1.8 -5.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3168 -1.8 -1.7 Molybdopterin converting factor, large subunit compare
Psest_2981 -1.8 -1.8 sodium pump decarboxylases, gamma subunit compare
Psest_3936 -1.8 -3.6 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1724 -1.8 -2.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3510 -1.8 -6.6 Na+-dependent transporters of the SNF family compare
Psest_2708 -1.8 -5.6 transaldolase compare
Psest_2718 -1.8 -1.2 hypothetical protein compare
Psest_1486 -1.8 -2.5 hypothetical protein compare
Psest_0257 -1.7 -2.8 Predicted Zn-dependent peptidases compare
Psest_1496 -1.7 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3649 -1.7 -5.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2764 -1.7 -0.9 hypothetical protein compare
Psest_0390 -1.7 -2.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_2901 -1.7 -1.4 hypothetical protein compare
Psest_3367 -1.7 -1.0 translation initation factor SUI1, putative, prokaryotic compare
Psest_3338 -1.7 -1.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2067 -1.6 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3306 -1.6 -2.7 conserved hypothetical integral membrane protein compare
Psest_1161 -1.6 -1.8 E3 Ubiquitin ligase. compare
Psest_2907 -1.6 -0.8 Protein of unknown function (DUF3618). compare
Psest_1636 -1.6 -3.0 putative transporter, required for glycine utilization (from data) compare
Psest_0260 -1.6 -1.2 Cell division protein compare
Psest_2265 -1.6 -2.6 Outer membrane protein compare
Psest_0511 -1.6 -1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_2123 -1.6 -1.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_4307 -1.5 -2.1 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_0737 -1.5 -0.6 Cu(I)-responsive transcriptional regulator compare
Psest_3070 -1.5 -1.8 3-oxoadipyl-CoA thiolase compare
Psest_3832 -1.5 -0.9 hypothetical protein compare
Psest_2946 -1.5 -2.4 septum site-determining protein MinD compare
Psest_0181 -1.5 -3.8 glycine cleavage system T protein compare
Psest_0259 -1.5 -0.8 cell division ATP-binding protein FtsE compare
Psest_3766 -1.5 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3721 -1.5 -3.7 Malic enzyme compare
Psest_3735 -1.5 -0.8 uncharacterized domain 1 compare
Psest_1120 -1.5 -4.4 uracil phosphoribosyltransferase compare
Psest_3050 -1.4 -2.3 tRNA_Gly_CCC compare
Psest_2725 -1.4 -1.8 hypothetical protein compare
Psest_4405 -1.4 -1.1 hypothetical protein compare
Psest_2872 -1.4 -1.1 protein RecA compare
Psest_2015 -1.4 -2.3 Type II secretory pathway, component PulD compare
Psest_3413 -1.4 -1.8 hypothetical protein compare
Psest_2104 -1.4 -0.8 IscR-regulated protein YhgI compare
Psest_1919 -1.4 -1.9 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1162 -1.4 -1.5 Spermidine synthase compare
Psest_3272 -1.4 -2.8 TIGR00252 family protein compare
Psest_0310 -1.4 -2.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_4080 -1.4 -2.7 Carbonic anhydrase compare
Psest_3926 -1.4 -6.4 GTP-binding protein TypA/BipA compare
Psest_2460 -1.4 -1.3 hypothetical protein compare
Psest_1563 -1.3 -1.6 Protein of unknown function (DUF548). compare
Psest_4042 -1.3 -1.3 hypothetical protein compare
Psest_4103 -1.3 -1.0 AraC-type DNA-binding domain-containing proteins compare
Psest_1204 -1.3 -1.4 Transcriptional regulators compare
Psest_3024 -1.3 -4.5 cytochrome d oxidase, subunit II (cydB) compare
Psest_4314 -1.3 -2.9 ABC-type metal ion transport system, ATPase component compare
Psest_1372 -1.3 -2.9 Methyl-accepting chemotaxis protein compare
Psest_1366 -1.3 -0.9 hypothetical protein compare
Psest_2278 -1.3 -1.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1997 -1.3 -1.4 6-phosphogluconolactonase compare
Psest_3145 -1.3 -0.7 hypothetical protein compare
Psest_3042 -1.3 -0.6 Nitrate reductase cytochrome c-type subunit compare
Psest_1215 -1.3 -1.8 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_0655 -1.3 -1.1 Chemotaxis signal transduction protein compare
Psest_3304 -1.3 -2.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3768 -1.3 -3.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_3170 -1.3 -3.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0212 -1.3 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_0060 -1.3 -1.1 Predicted Fe-S protein compare
Psest_1837 -1.3 -3.0 Endoglucanase compare
Psest_2711 -1.2 -1.4 PilZ domain. compare
Psest_0457 -1.2 -1.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1048 -1.2 -4.2 Uncharacterized paraquat-inducible protein A compare
Psest_2766 -1.2 -0.7 hypothetical protein compare
Psest_2612 -1.2 -2.1 hypothetical protein compare
Psest_2714 -1.2 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_2230 -1.2 -3.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0692 -1.2 -2.1 rRNA methylase, putative, group 3 compare
Psest_3307 -1.2 -3.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3991 -1.2 -1.8 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_0355 -1.2 -1.1 Glycine cleavage system regulatory protein compare
Psest_3884 -1.2 -0.5 Signal transduction histidine kinase compare
Psest_1516 -1.2 -1.5 Uncharacterized lipoprotein compare
Psest_3720 -1.2 -7.5 penicillin-binding protein, 1A family compare
Psest_1905 -1.2 -2.0 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0902 -1.2 -2.8 Predicted transcriptional regulators compare
Psest_0141 -1.2 -2.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0696 -1.2 -4.0 hypothetical protein compare
Psest_1050 -1.2 -6.3 Paraquat-inducible protein B compare
Psest_0805 -1.1 -1.8 hypothetical protein compare
Psest_0393 -1.1 -4.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1327 -1.1 -5.1 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_0508 -1.1 -3.5 gamma-glutamyl phosphate reductase compare
Psest_2589 -1.1 -4.7 3-isopropylmalate dehydrogenase compare
Psest_2268 -1.1 -2.2 Alcohol dehydrogenase, class IV compare
Psest_1610 -1.1 -1.8 hypothetical protein compare
Psest_0551 -1.1 -2.8 PEP phosphonomutase and related enzymes compare
Psest_2645 -1.1 -2.9 Transcriptional regulator compare
Psest_1065 -1.1 -1.2 hypothetical protein compare
Psest_4345 -1.1 -4.5 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1763 -1.1 -1.8 hypothetical protein compare
Psest_2344 -1.1 -1.8 Methyl-accepting chemotaxis protein compare
Psest_3578 -1.1 -6.9 Catalase conserved
Psest_2543 -1.1 -2.7 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1574 -1.1 -1.3 phenazine biosynthesis protein PhzF family compare
Psest_3002 -1.1 -0.8 Putative translation initiation inhibitor, yjgF family compare
Psest_0218 -1.1 -1.9 Acyl-CoA hydrolase compare
Psest_2991 -1.1 -2.8 hypothetical protein compare
Psest_3178 -1.1 -1.8 formyltetrahydrofolate deformylase compare
Psest_3092 -1.1 -0.9 ribonuclease III, bacterial compare
Psest_4128 -1.1 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0765 -1.1 -3.2 hypothetical protein compare
Psest_0368 -1.1 -1.4 Transcriptional regulator compare


Specific Phenotypes

For 11 genes in this experiment

For stress Paraquat dichloride in Pseudomonas stutzeri RCH2

For stress Paraquat dichloride across organisms