Experiment set11H36 for Pseudomonas stutzeri RCH2

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.016 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_3648 -5.3 -9.5 anthranilate phosphoribosyltransferase compare
Psest_2584 -4.7 -7.2 Phosphoribosylanthranilate isomerase compare
Psest_1492 -4.6 -5.4 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3647 -4.3 -7.9 Indole-3-glycerol phosphate synthase compare
Psest_3816 -3.9 -1.4 DNA-directed RNA polymerase, omega subunit compare
Psest_0063 -3.8 -14.6 tryptophan synthase, beta subunit compare
Psest_0062 -3.6 -16.2 tryptophan synthase, alpha subunit compare
Psest_3649 -3.4 -11.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1871 -3.3 -11.1 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3650 -3.2 -12.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1496 -2.8 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_3322 -2.8 -18.2 TIGR02099 family protein compare
Psest_0498 -2.5 -1.8 ribosome small subunit-dependent GTPase A compare
Psest_0013 -2.4 -8.4 Lauroyl/myristoyl acyltransferase compare
Psest_1860 -2.3 -3.6 Uncharacterized conserved protein compare
Psest_4128 -2.2 -2.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3092 -2.2 -2.1 ribonuclease III, bacterial compare
Psest_1540 -2.2 -1.9 biotin-dependent carboxylase uncharacterized domain compare
Psest_0516 -2.2 -10.6 D-alanyl-D-alanine carboxypeptidase compare
Psest_3146 -2.1 -1.7 hypothetical protein compare
Psest_3478 -2.0 -1.9 Cytochrome B561 compare
Psest_0066 -2.0 -2.5 Protein of unknown function (DUF3060). compare
Psest_3904 -2.0 -2.2 hypothetical protein compare
Psest_0514 -1.9 -5.9 lytic murein transglycosylase B compare
Psest_3301 -1.9 -2.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_0515 -1.9 -5.3 rare lipoprotein A compare
Psest_0212 -1.9 -2.6 exodeoxyribonuclease V, gamma subunit compare
Psest_3810 -1.8 -1.2 orotate phosphoribosyltransferase compare
Psest_4219 -1.8 -2.8 DNA polymerase I compare
Psest_2744 -1.8 -1.2 Uncharacterized conserved protein compare
Psest_0161 -1.8 -2.3 Membrane-bound metallopeptidase compare
Psest_3323 -1.8 -4.6 ribonuclease, Rne/Rng family compare
Psest_2872 -1.7 -1.4 protein RecA compare
Psest_1510 -1.7 -2.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3878 -1.6 -3.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0277 -1.6 -1.5 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2243 -1.6 -1.1 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_4363 -1.6 -6.6 ATPases involved in chromosome partitioning compare
Psest_2991 -1.6 -4.5 hypothetical protein compare
Psest_0355 -1.6 -1.6 Glycine cleavage system regulatory protein compare
Psest_2333 -1.6 -1.1 Protein of unknown function (DUF3359). compare
Psest_2285 -1.6 -3.2 ATP-dependent protease La compare
Psest_2133 -1.6 -8.2 Uncharacterized protein conserved in bacteria compare
Psest_1167 -1.5 -1.2 hypothetical protein compare
Psest_1204 -1.5 -2.1 Transcriptional regulators compare
Psest_3400 -1.5 -1.2 Copper resistance protein D. compare
Psest_1907 -1.5 -1.3 hypothetical protein compare
Psest_2726 -1.5 -1.9 Rhodanese-related sulfurtransferase compare
Psest_1012 -1.5 -3.3 Signal transduction histidine kinase compare
Psest_2648 -1.5 -1.8 hypothetical protein compare
Psest_1663 -1.5 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2945 -1.5 -1.2 septum site-determining protein MinC compare
Psest_1691 -1.5 -4.0 aminodeoxychorismate lyase compare
Psest_4191 -1.4 -2.9 Transcriptional regulator compare
Psest_2637 -1.4 -1.6 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3391 -1.4 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0259 -1.4 -1.3 cell division ATP-binding protein FtsE compare
Psest_2946 -1.4 -2.4 septum site-determining protein MinD compare
Psest_3228 -1.4 -7.0 Zn-dependent protease with chaperone function compare
Psest_0367 -1.4 -2.2 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_2101 -1.3 -1.8 hypothetical protein compare
Psest_1724 -1.3 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1166 -1.3 -1.9 transcriptional regulator, ArgP family compare
Psest_3100 -1.3 -3.9 RNA polymerase sigma factor RpoE compare
Psest_2885 -1.3 -3.0 Acyl carrier protein compare
Psest_2748 -1.3 -1.6 Transcriptional regulator compare
Psest_0078 -1.3 -1.2 hypothetical protein compare
Psest_2011 -1.3 -6.0 Predicted permease compare
Psest_1397 -1.3 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_2132 -1.3 -7.8 Outer membrane protein compare
Psest_0922 -1.3 -3.1 alkylhydroperoxidase AhpD family core domain compare
Psest_1532 -1.3 -3.4 DNA recombination-dependent growth factor C compare
Psest_4078 -1.2 -1.7 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3954 -1.2 -1.9 Small protein A (tmRNA-binding) compare
Psest_3148 -1.2 -1.0 hypothetical protein compare
Psest_1582 -1.2 -2.8 Protein of unknown function (DUF3087). compare
Psest_2110 -1.2 -2.7 hypothetical protein compare
Psest_0309 -1.2 -0.9 RND family efflux transporter, MFP subunit compare
Psest_0181 -1.2 -3.6 glycine cleavage system T protein compare
Psest_1877 -1.2 -2.5 AraC-type DNA-binding domain-containing proteins compare
Psest_2646 -1.1 -1.7 SOS regulatory protein LexA compare
Psest_3546 -1.1 -1.2 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2023 -1.1 -2.7 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3168 -1.1 -1.5 Molybdopterin converting factor, large subunit compare
Psest_3803 -1.1 -1.1 DNA repair protein radc compare
Psest_4283 -1.1 -4.4 Spermidine/putrescine-binding periplasmic protein compare
Psest_4103 -1.1 -1.1 AraC-type DNA-binding domain-containing proteins compare
Psest_4307 -1.1 -2.6 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3882 -1.1 -5.9 Opacity protein and related surface antigens compare
Psest_2334 -1.1 -7.2 Uncharacterized protein conserved in bacteria compare
Psest_0067 -1.1 -2.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_0094 -1.1 -2.1 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1031 -1.1 -5.2 Uncharacterized protein conserved in bacteria compare
Psest_2671 -1.0 -2.5 Transcriptional regulator compare
Psest_2850 -1.0 -0.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1227 -1.0 -2.1 Predicted SAM-dependent methyltransferase compare
Psest_0279 -1.0 -4.3 methionine biosynthesis protein MetW compare
Psest_2274 -1.0 -3.4 coenzyme PQQ biosynthesis protein A compare
Psest_3236 -1.0 -2.4 hypothetical protein compare
Psest_2645 -1.0 -3.5 Transcriptional regulator compare
Psest_0020 -1.0 -2.7 K+ transport systems, NAD-binding component compare
Psest_1919 -1.0 -1.8 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_3027 -1.0 -3.2 AZL_007950 family protein compare
Psest_0719 -1.0 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_2564 -1.0 -4.0 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_1058 -1.0 -2.7 ribosomal-protein-alanine acetyltransferase compare
Psest_3449 -1.0 -1.7 DJ-1 family protein compare
Psest_1622 -1.0 -2.7 hypothetical protein compare
Psest_4090 -1.0 -1.3 diaminobutyrate acetyltransferase compare
Psest_1551 -1.0 -2.3 Integral membrane protein, interacts with FtsH compare
Psest_1695 -0.9 -1.4 Tfp pilus assembly protein PilZ compare
Psest_0508 -0.9 -4.3 gamma-glutamyl phosphate reductase compare
Psest_3536 -0.9 -1.0 hypothetical protein compare
Psest_3767 -0.9 -2.0 tyrosine recombinase XerC compare
Psest_0313 -0.9 -2.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2724 -0.9 -1.6 hypothetical protein compare
Psest_3084 -0.9 -1.7 methyltransferase, putative compare
Psest_3474 -0.9 -1.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_2789 -0.9 -2.9 Ammonia permease compare
Psest_3230 -0.9 -2.8 Uncharacterized conserved protein compare
Psest_1837 -0.9 -2.8 Endoglucanase compare
Psest_2048 -0.9 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1322 -0.9 -1.4 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_0691 -0.9 -5.8 ribonuclease R compare
Psest_4044 -0.9 -1.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0292 -0.9 -2.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1447 -0.9 -3.2 Putative threonine efflux protein compare
Psest_2500 -0.9 -1.7 hypothetical protein compare
Psest_4345 -0.9 -4.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2918 -0.9 -3.0 amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-) compare
Psest_1951 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1421 -0.9 -2.1 Glutathione S-transferase compare
Psest_1643 -0.9 -0.8 hypothetical protein compare
Psest_3296 -0.9 -0.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_3692 -0.8 -2.2 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_0186 -0.8 -2.5 Protein-disulfide isomerase compare
Psest_1800 -0.8 -3.5 anion transporter compare
Psest_3828 -0.8 -0.6 zinc-binding alcohol dehydrogenase family protein compare
Psest_1750 -0.8 -1.5 Protein of unknown function (DUF2802). compare
Psest_3573 -0.8 -2.3 dTDP-4-dehydrorhamnose reductase compare
Psest_3510 -0.8 -3.8 Na+-dependent transporters of the SNF family compare
Psest_0299 -0.8 -2.2 Chemotaxis signal transduction protein compare
Psest_2650 -0.8 -1.9 hypothetical protein compare
Psest_3565 -0.8 -0.6 hypothetical protein compare
Psest_2580 -0.8 -3.2 Uncharacterized membrane protein, required for colicin V production compare
Psest_1360 -0.8 -2.0 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3218 -0.8 -4.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0357 -0.8 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1327 -0.8 -4.1 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_4298 -0.8 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0359 -0.8 -1.9 Transcriptional regulators compare
Psest_3842 -0.8 -1.9 Transcriptional regulators compare
Psest_4005 -0.8 -2.9 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1472 -0.8 -3.3 Protein of unknown function (DUF3108). compare
Psest_0489 -0.8 -1.0 phosphoserine phosphatase SerB compare
Psest_0759 -0.8 -1.1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3507 -0.8 -1.6 FOG: EAL domain compare
Psest_2667 -0.8 -2.8 Uncharacterized protein involved in propionate catabolism compare
Psest_3203 -0.8 -2.5 hypothetical protein compare
Psest_1920 -0.8 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_3860 -0.8 -1.4 Predicted permeases compare
Psest_0207 -0.8 -1.8 hypothetical protein compare
Psest_3070 -0.8 -1.6 3-oxoadipyl-CoA thiolase compare
Psest_2981 -0.8 -1.1 sodium pump decarboxylases, gamma subunit compare
Psest_2114 -0.8 -2.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4045 -0.8 -2.5 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_2974 -0.8 -3.6 Predicted glycosyltransferase compare
Psest_4158 -0.8 -1.4 Flagellar motor protein compare
Psest_2446 -0.8 -1.5 acetyl-CoA acetyltransferases compare
Psest_2773 -0.8 -3.2 glycerol kinase compare
Psest_0280 -0.8 -4.1 homoserine O-acetyltransferase compare
Psest_1491 -0.8 -1.7 Cold shock proteins compare
Psest_3881 -0.7 -0.7 hypothetical protein compare
Psest_2465 -0.7 -2.7 hypothetical protein compare
Psest_1199 -0.7 -2.4 OHCU decarboxylase compare
Psest_3063 -0.7 -2.5 hypothetical protein compare
Psest_4252 -0.7 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_4280 -0.7 -1.5 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_0430 -0.7 -2.9 phosphonate ABC transporter, permease protein PhnE compare
Psest_3338 -0.7 -1.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1456 -0.7 -1.6 Protein of unknown function (DUF2892). compare
Psest_3435 -0.7 -2.6 hypothetical protein compare
Psest_3275 -0.7 -2.9 Stringent starvation protein B compare
Psest_0334 -0.7 -1.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3180 -0.7 -3.0 Exonuclease I compare
Psest_2397 -0.7 -3.8 Deoxyribodipyrimidine photolyase compare
Psest_3042 -0.7 -0.7 Nitrate reductase cytochrome c-type subunit compare
Psest_1804 -0.7 -1.3 Superfamily II DNA and RNA helicases compare
Psest_3883 -0.7 -2.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1990 -0.7 -1.9 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_2017 -0.7 -2.5 Predicted acyltransferase compare
Psest_3069 -0.7 -0.9 3-oxoadipate enol-lactonase compare
Psest_2940 -0.7 -1.8 Predicted membrane protein compare
Psest_2809 -0.7 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0312 -0.7 -2.3 Superfamily II DNA and RNA helicases compare
Psest_1218 -0.7 -1.4 Predicted endonuclease containing a URI domain compare
Psest_3543 -0.7 -1.4 hypothetical protein compare
Psest_3919 -0.7 -2.8 Transcriptional regulator compare
Psest_0442 -0.7 -1.5 ATPases of the AAA+ class compare
Psest_4343 -0.7 -1.4 Protein of unknown function (DUF3301). compare


Specific Phenotypes

For 2 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas stutzeri RCH2

For stress Vancomycin Hydrochloride Hydrate across organisms