Experiment set11H33 for Pseudomonas stutzeri RCH2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Psest_0062 -5.0 -16.2 tryptophan synthase, alpha subunit compare
Psest_3648 -4.9 -10.8 anthranilate phosphoribosyltransferase compare
Psest_1492 -4.7 -4.5 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0063 -4.4 -13.7 tryptophan synthase, beta subunit compare
Psest_2584 -4.3 -9.1 Phosphoribosylanthranilate isomerase compare
Psest_3647 -3.9 -9.1 Indole-3-glycerol phosphate synthase compare
Psest_3650 -3.3 -13.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0958 -2.6 -7.5 Oligoketide cyclase/lipid transport protein compare
Psest_3649 -2.6 -9.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_4219 -2.4 -3.2 DNA polymerase I compare
Psest_0277 -2.4 -2.1 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1999 -2.4 -1.5 pseudouridine synthase compare
Psest_2333 -2.3 -1.4 Protein of unknown function (DUF3359). compare
Psest_4406 -2.2 -2.1 hypothetical protein compare
Psest_1496 -2.2 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_3129 -2.1 -1.7 tyrosine recombinase XerD compare
Psest_2945 -2.1 -1.6 septum site-determining protein MinC compare
Psest_0031 -2.0 -2.2 Uncharacterized conserved protein compare
Psest_2775 -2.0 -3.6 Glycerol-3-phosphate dehydrogenase compare
Psest_3145 -1.8 -1.8 hypothetical protein compare
Psest_1167 -1.7 -1.3 hypothetical protein compare
Psest_1516 -1.7 -2.5 Uncharacterized lipoprotein compare
Psest_2304 -1.6 -1.3 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1293 -1.6 -1.8 VanZ like family. compare
Psest_0028 -1.6 -3.8 Coproporphyrinogen III oxidase compare
Psest_2442 -1.6 -2.7 hypothetical protein compare
Psest_1532 -1.6 -3.8 DNA recombination-dependent growth factor C compare
Psest_2637 -1.5 -1.8 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3148 -1.5 -1.2 hypothetical protein compare
Psest_4128 -1.5 -1.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3998 -1.4 -6.2 glutamate--cysteine ligase compare
Psest_1695 -1.4 -3.9 Tfp pilus assembly protein PilZ compare
Psest_4134 -1.4 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1659 -1.4 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3226 -1.4 -1.0 Predicted membrane protein compare
Psest_3476 -1.4 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1166 -1.4 -2.2 transcriptional regulator, ArgP family compare
Psest_0697 -1.4 -2.6 ribosomal protein L9 compare
Psest_4178 -1.4 -2.5 hypothetical protein compare
Psest_0831 -1.3 -1.1 hypothetical protein compare
Psest_1879 -1.3 -2.9 Trk-type K+ transport systems, membrane components compare
Psest_4191 -1.3 -2.7 Transcriptional regulator compare
Psest_1814 -1.3 -8.4 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3400 -1.3 -1.3 Copper resistance protein D. compare
Psest_2643 -1.3 -2.0 Beta-glucosidase-related glycosidases compare
Psest_1354 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0987 -1.3 -2.3 Predicted periplasmic or secreted lipoprotein compare
Psest_0744 -1.2 -1.0 Uncharacterized conserved protein compare
Psest_1863 -1.2 -2.3 hypothetical protein compare
Psest_0243 -1.2 -1.1 hypothetical protein compare
Psest_2530 -1.2 -4.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0998 -1.2 -1.7 poly(A) polymerase compare
Psest_3117 -1.2 -3.1 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0457 -1.2 -2.7 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2862 -1.2 -6.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_1691 -1.2 -2.7 aminodeoxychorismate lyase compare
Psest_0660 -1.2 -2.7 Methyl-accepting chemotaxis protein compare
Psest_1704 -1.1 -1.3 Dehydrogenases (flavoproteins) compare
Psest_2023 -1.1 -2.1 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3850 -1.1 -0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0054 -1.1 -2.7 hypothetical protein compare
Psest_3456 -1.1 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_2946 -1.1 -2.5 septum site-determining protein MinD compare
Psest_0413 -1.1 -4.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0489 -1.1 -1.2 phosphoserine phosphatase SerB compare
Psest_1031 -1.1 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_0498 -1.1 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_2122 -1.1 -1.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0505 -1.0 -4.3 Putative effector of murein hydrolase compare
Psest_3565 -1.0 -1.3 hypothetical protein compare
Psest_0411 -1.0 -5.2 biotin synthetase compare
Psest_1660 -1.0 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1305 -1.0 -3.0 Heat shock protein compare
Psest_3535 -1.0 -1.9 hypothetical protein compare
Psest_0466 -1.0 -2.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1860 -1.0 -1.8 Uncharacterized conserved protein compare
Psest_2104 -1.0 -1.5 IscR-regulated protein YhgI compare
Psest_1772 -1.0 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2591 -1.0 -2.8 3-isopropylmalate dehydratase, large subunit compare
Psest_1491 -1.0 -1.9 Cold shock proteins compare
Psest_2561 -1.0 -0.8 hypothetical protein compare
Psest_3296 -1.0 -0.9 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_4298 -1.0 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1905 -1.0 -0.9 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_0401 -0.9 -1.1 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_3048 -0.9 -2.1 hypothetical protein compare
Psest_3766 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0442 -0.9 -1.9 ATPases of the AAA+ class compare
Psest_1463 -0.9 -0.7 SufE protein probably involved in Fe-S center assembly compare
Psest_2950 -0.9 -3.1 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_3100 -0.9 -3.0 RNA polymerase sigma factor RpoE compare
Psest_3767 -0.9 -2.6 tyrosine recombinase XerC compare
Psest_3693 -0.9 -1.1 Glycosyltransferases involved in cell wall biogenesis compare
Psest_4049 -0.9 -1.3 hypothetical protein compare
Psest_2590 -0.9 -0.7 3-isopropylmalate dehydratase, small subunit compare
Psest_4274 -0.9 -2.5 hypothetical protein compare
Psest_3056 -0.9 -2.2 hypothetical protein compare
Psest_2253 -0.9 -2.2 small redox-active disulfide protein 2 compare
Psest_2906 -0.9 -2.0 tRNA_Thr_CGT compare
Psest_3069 -0.9 -1.9 3-oxoadipate enol-lactonase compare
Psest_2937 -0.9 -2.6 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_3317 -0.9 -2.5 Phosphotransferase System HPr (HPr) Family compare
Psest_3110 -0.9 -3.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3213 -0.8 -3.6 acetate kinase compare
Psest_3013 -0.8 -1.7 cobyrinic acid a,c-diamide synthase compare
Psest_4044 -0.8 -2.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0310 -0.8 -2.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2789 -0.8 -3.1 Ammonia permease compare
Psest_1752 -0.8 -0.9 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0152 -0.8 -2.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_2651 -0.8 -2.2 DNA topoisomerase I, bacterial compare
Psest_2101 -0.8 -1.0 hypothetical protein compare
Psest_4335 -0.8 -1.3 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1292 -0.8 -3.8 monothiol glutaredoxin, Grx4 family compare
Psest_3391 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2650 -0.8 -1.4 hypothetical protein compare
Psest_2901 -0.8 -1.1 hypothetical protein compare
Psest_1479 -0.8 -1.7 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0174 -0.8 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1524 -0.8 -2.2 Sel1 repeat. compare
Psest_2711 -0.8 -1.2 PilZ domain. compare
Psest_3735 -0.8 -1.2 uncharacterized domain 1 compare
Psest_2343 -0.8 -1.8 Mg-dependent DNase compare
Psest_1424 -0.8 -1.5 Lipoate-protein ligase A compare
Psest_0409 -0.7 -2.0 Putative homoserine kinase type II (protein kinase fold) compare
Psest_0533 -0.7 -2.5 Sel1 repeat. compare
Psest_3113 -0.7 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0306 -0.7 -4.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2981 -0.7 -1.4 sodium pump decarboxylases, gamma subunit compare
Psest_1056 -0.7 -1.4 2-isopropylmalate synthase, bacterial type compare
Psest_1235 -0.7 -3.5 Leucyl aminopeptidase compare
Psest_0408 -0.7 -2.0 Protein involved in catabolism of external DNA compare
Psest_4396 -0.7 -4.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0547 -0.7 -1.8 Urease accessory protein UreF compare
Psest_1824 -0.7 -1.6 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2872 -0.7 -1.0 protein RecA compare
Psest_3188 -0.7 -2.5 hypothetical protein compare
Psest_3143 -0.7 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_2285 -0.7 -1.6 ATP-dependent protease La compare
Psest_1295 -0.7 -2.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1843 -0.7 -1.4 Uncharacterized Fe-S protein compare
Psest_1655 -0.7 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3301 -0.7 -1.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_3408 -0.7 -2.2 Predicted transcriptional regulators compare
Psest_0390 -0.7 -1.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_1750 -0.7 -1.5 Protein of unknown function (DUF2802). compare
Psest_2726 -0.7 -0.8 Rhodanese-related sulfurtransferase compare
Psest_1136 -0.7 -2.8 Prolyl oligopeptidase family. compare
Psest_2712 -0.7 -2.0 Surface lipoprotein compare
Psest_0412 -0.7 -3.6 8-amino-7-oxononanoate synthase compare
Psest_1111 -0.7 -1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3911 -0.7 -3.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0137 -0.7 -3.4 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1012 -0.7 -1.6 Signal transduction histidine kinase compare
Psest_0741 -0.7 -2.8 drug resistance transporter, Bcr/CflA subfamily compare
Psest_4078 -0.7 -1.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3816 -0.7 -0.7 DNA-directed RNA polymerase, omega subunit compare
Psest_2570 -0.7 -2.5 Transcriptional regulator compare
Psest_0113 -0.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2594 -0.7 -2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4042 -0.7 -1.5 hypothetical protein compare
Psest_1199 -0.7 -2.0 OHCU decarboxylase compare
Psest_0662 -0.7 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0778 -0.6 -2.2 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_1325 -0.6 -2.2 Molecular chaperone compare
Psest_4311 -0.6 -3.3 Predicted metal-dependent hydrolase compare
Psest_1991 -0.6 -3.9 Glutathione S-transferase compare
Psest_4258 -0.6 -2.1 ABC-type uncharacterized transport system, auxiliary component compare
Psest_4043 -0.6 -1.1 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0678 -0.6 -1.6 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1661 -0.6 -0.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1774 -0.6 -1.0 Glutathione peroxidase compare
Psest_2188 -0.6 -3.4 AraC-type DNA-binding domain-containing proteins compare
Psest_0822 -0.6 -1.9 Transcriptional regulators compare
Psest_4280 -0.6 -2.3 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_2527 -0.6 -2.9 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0503 -0.6 -0.9 Acyl dehydratase compare
Psest_0719 -0.6 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3921 -0.6 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2944 -0.6 -0.6 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_4124 -0.6 -1.5 hypothetical protein compare
Psest_1732 -0.6 -1.9 flagellar biosynthetic protein FliP compare
Psest_4211 -0.6 -1.8 conserverd hypothetical protein compare
Psest_1459 -0.6 -1.9 hypothetical protein compare
Psest_2240 -0.6 -1.2 hypothetical protein compare
Psest_2725 -0.6 -1.2 hypothetical protein compare
Psest_0378 -0.6 -1.8 Lactate dehydrogenase and related dehydrogenases compare
Psest_4131 -0.6 -2.3 alpha-ketoglutarate sensor protein (mifS) (from data) compare
Psest_0280 -0.6 -3.7 homoserine O-acetyltransferase compare
Psest_2046 -0.6 -1.9 hypothetical protein compare
Psest_4001 -0.6 -1.8 acetylornithine deacetylase (ArgE) compare
Psest_2565 -0.6 -1.0 Transcriptional regulator compare
Psest_2634 -0.6 -1.9 glycine betaine aldehyde dehydrogenase compare
Psest_1182 -0.6 -2.6 Transcriptional regulator compare
Psest_1514 -0.6 -2.8 Glycine cleavage system regulatory protein compare
Psest_4220 -0.6 -1.5 Protein of unknown function (DUF2782). compare
Psest_4324 -0.6 -2.3 DNA repair photolyase compare
Psest_2671 -0.6 -1.1 Transcriptional regulator compare
Psest_0312 -0.6 -2.0 Superfamily II DNA and RNA helicases compare
Psest_3954 -0.6 -1.3 Small protein A (tmRNA-binding) compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in lb experiments