Experiment set11H32 for Pseudomonas stutzeri RCH2

Compare to:

LB with Dimethyl Sulfoxide 5 vol%

200 most important genes:

  gene name fitness t score description  
Psest_2584 -4.3 -8.3 Phosphoribosylanthranilate isomerase compare
Psest_3648 -4.0 -8.4 anthranilate phosphoribosyltransferase compare
Psest_0062 -4.0 -16.0 tryptophan synthase, alpha subunit compare
Psest_0063 -2.9 -12.5 tryptophan synthase, beta subunit compare
Psest_2945 -2.9 -1.7 septum site-determining protein MinC compare
Psest_1496 -2.8 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_3647 -2.7 -8.6 Indole-3-glycerol phosphate synthase compare
Psest_3546 -2.4 -1.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3650 -2.3 -10.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1167 -2.2 -1.4 hypothetical protein compare
Psest_3351 -2.2 -5.2 peptide chain release factor 3 compare
Psest_0725 -2.0 -2.5 Negative regulator of beta-lactamase expression compare
Psest_2333 -1.9 -1.3 Protein of unknown function (DUF3359). compare
Psest_1516 -1.9 -3.1 Uncharacterized lipoprotein compare
Psest_3145 -1.9 -1.8 hypothetical protein compare
Psest_2613 -1.9 -1.9 hypothetical protein compare
Psest_0401 -1.8 -2.8 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_4219 -1.8 -2.6 DNA polymerase I compare
Psest_0193 -1.7 -1.4 conserved hypothetical protein compare
Psest_0575 -1.6 -1.1 HrpA-like helicases compare
Psest_1643 -1.6 -1.3 hypothetical protein compare
Psest_3693 -1.6 -2.6 Glycosyltransferases involved in cell wall biogenesis compare
Psest_4191 -1.6 -2.9 Transcriptional regulator compare
Psest_0845 -1.5 -0.9 hypothetical protein compare
Psest_3944 -1.5 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0411 -1.5 -6.8 biotin synthetase compare
Psest_1814 -1.5 -9.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2308 -1.5 -1.2 Predicted Fe-S protein compare
Psest_2067 -1.5 -1.3 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3031 -1.5 -1.0 hypothetical protein compare
Psest_3777 -1.5 -2.3 diguanylate cyclase (GGDEF) domain compare
Psest_0413 -1.4 -5.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2757 -1.4 -1.3 hypothetical protein compare
Psest_0412 -1.4 -7.5 8-amino-7-oxononanoate synthase compare
Psest_3810 -1.4 -1.7 orotate phosphoribosyltransferase compare
Psest_3146 -1.4 -1.5 hypothetical protein compare
Psest_2748 -1.3 -1.8 Transcriptional regulator compare
Psest_0415 -1.3 -3.2 dethiobiotin synthase compare
Psest_3270 -1.3 -1.9 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3649 -1.3 -5.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0306 -1.2 -8.7 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2988 -1.2 -4.6 aspartate kinase, monofunctional class compare
Psest_2605 -1.2 -2.1 transcriptional activator RfaH compare
Psest_1824 -1.2 -2.9 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2025 -1.2 -1.0 cold shock domain protein CspD compare
Psest_2911 -1.2 -1.5 Protein of unknown function (DUF2945). compare
Psest_2850 -1.2 -1.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0609 -1.2 -1.0 hypothetical protein compare
Psest_1492 -1.2 -5.2 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_1809 -1.2 -6.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0511 -1.2 -1.3 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1704 -1.1 -1.3 Dehydrogenases (flavoproteins) compare
Psest_3047 -1.1 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1012 -1.1 -3.1 Signal transduction histidine kinase compare
Psest_3910 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_4042 -1.1 -2.1 hypothetical protein compare
Psest_2946 -1.1 -2.4 septum site-determining protein MinD compare
Psest_0275 -1.1 -3.4 Protein of unknown function (DUF3392). compare
Psest_3060 -1.1 -3.1 hypothetical protein compare
Psest_0024 -1.1 -6.0 LysM domain. compare
Psest_0276 -1.1 -2.9 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_0313 -1.1 -3.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0785 -1.1 -3.0 Thioredoxin reductase compare
Psest_4155 -1.1 -2.8 Flagellin and related hook-associated proteins compare
Psest_0814 -1.1 -1.6 MoxR-like ATPases compare
Psest_4049 -1.0 -1.2 hypothetical protein compare
Psest_0515 -1.0 -3.1 rare lipoprotein A compare
Psest_3806 -1.0 -4.5 Phosphomannomutase compare
Psest_2637 -1.0 -1.3 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1695 -1.0 -3.0 Tfp pilus assembly protein PilZ compare
Psest_3168 -1.0 -1.7 Molybdopterin converting factor, large subunit compare
Psest_3862 -1.0 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2643 -1.0 -1.7 Beta-glucosidase-related glycosidases compare
Psest_4044 -1.0 -1.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1562 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0334 -1.0 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2460 -1.0 -1.6 hypothetical protein compare
Psest_1663 -1.0 -2.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2901 -0.9 -0.9 hypothetical protein compare
Psest_2591 -0.9 -1.8 3-isopropylmalate dehydratase, large subunit compare
Psest_0442 -0.9 -1.7 ATPases of the AAA+ class compare
Psest_0355 -0.9 -1.2 Glycine cleavage system regulatory protein compare
Psest_1062 -0.9 -3.1 Carbonic anhydrase compare
Psest_3767 -0.9 -2.7 tyrosine recombinase XerC compare
Psest_3720 -0.9 -6.9 penicillin-binding protein, 1A family compare
Psest_0592 -0.9 -2.0 hypothetical protein compare
Psest_3296 -0.9 -0.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2768 -0.9 -2.0 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_2343 -0.9 -2.5 Mg-dependent DNase compare
Psest_1700 -0.9 -2.0 Transcriptional regulator compare
Psest_1540 -0.9 -0.9 biotin-dependent carboxylase uncharacterized domain compare
Psest_1510 -0.9 -2.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2277 -0.9 -3.5 coenzyme PQQ biosynthesis protein A compare
Psest_0186 -0.9 -2.8 Protein-disulfide isomerase compare
Psest_0094 -0.9 -2.2 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3962 -0.9 -0.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0257 -0.9 -1.7 Predicted Zn-dependent peptidases compare
Psest_0673 -0.9 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_1782 -0.8 -1.2 Predicted transcriptional regulators compare
Psest_0015 -0.8 -2.3 Tetratricopeptide repeat. compare
Psest_3513 -0.8 -2.6 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) compare
Psest_1480 -0.8 -1.7 arsenate reductase (glutaredoxin) compare
Psest_1065 -0.8 -1.3 hypothetical protein compare
Psest_3231 -0.8 -1.2 hypothetical protein compare
Psest_2312 -0.8 -3.8 Small-conductance mechanosensitive channel compare
Psest_3375 -0.8 -4.3 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1940 -0.8 -2.8 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_0521 -0.8 -4.4 lytic murein transglycosylase compare
Psest_1822 -0.8 -3.7 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1954 -0.8 -2.1 hypothetical protein compare
Psest_1073 -0.8 -2.8 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_1532 -0.8 -2.0 DNA recombination-dependent growth factor C compare
Psest_4343 -0.8 -1.9 Protein of unknown function (DUF3301). compare
Psest_3904 -0.8 -1.3 hypothetical protein compare
Psest_3215 -0.8 -2.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_0919 -0.8 -1.3 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1921 -0.8 -2.7 Protein of unknown function (DUF2797). compare
Psest_3170 -0.8 -1.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2561 -0.8 -0.7 hypothetical protein compare
Psest_2545 -0.8 -1.3 recombination protein RecR compare
Psest_2766 -0.8 -0.7 hypothetical protein compare
Psest_2981 -0.8 -1.3 sodium pump decarboxylases, gamma subunit compare
Psest_3413 -0.8 -1.7 hypothetical protein compare
Psest_4128 -0.8 -1.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0533 -0.8 -2.3 Sel1 repeat. compare
Psest_2293 -0.8 -0.8 hypothetical protein compare
Psest_3838 -0.8 -2.1 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_0853 -0.8 -1.5 6-phosphogluconolactonase compare
Psest_2667 -0.8 -2.4 Uncharacterized protein involved in propionate catabolism compare
Psest_2967 -0.8 -2.2 flagellar basal-body rod protein FlgC compare
Psest_4023 -0.8 -2.3 hypothetical protein compare
Psest_3908 -0.8 -0.8 Cytochrome c553 compare
Psest_1457 -0.8 -0.6 FOG: Ankyrin repeat compare
Psest_3288 -0.7 -4.5 type IV-A pilus assembly ATPase PilB compare
Psest_1029 -0.7 -1.4 Regulator of competence-specific genes compare
Psest_3931 -0.7 -2.5 Signal transduction histidine kinase, nitrogen specific compare
Psest_1632 -0.7 -2.1 Predicted permeases compare
Psest_3803 -0.7 -0.8 DNA repair protein radc compare
Psest_0852 -0.7 -3.7 glucose-6-phosphate 1-dehydrogenase compare
Psest_3289 -0.7 -3.2 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3226 -0.7 -0.6 Predicted membrane protein compare
Psest_3824 -0.7 -1.8 Predicted membrane protein compare
Psest_4045 -0.7 -3.1 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_3286 -0.7 -1.9 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3391 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0285 -0.7 -3.1 pilus retraction protein PilT compare
Psest_3287 -0.7 -2.3 Type II secretory pathway, component PulF compare
Psest_2590 -0.7 -0.6 3-isopropylmalate dehydratase, small subunit compare
Psest_1905 -0.7 -1.0 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_2848 -0.7 -1.3 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_1215 -0.7 -1.7 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1306 -0.7 -0.8 hypothetical protein compare
Psest_4168 -0.7 -2.2 Flagellar FliJ protein. compare
Psest_1160 -0.7 -2.1 Uncharacterized conserved protein compare
Psest_0440 -0.7 -1.8 hypothetical protein compare
Psest_2092 -0.7 -1.8 hypothetical protein compare
Psest_3963 -0.7 -4.0 PAS domain S-box compare
Psest_2566 -0.7 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0520 -0.7 -0.5 hypothetical protein compare
Psest_1741 -0.7 -0.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3056 -0.7 -2.1 hypothetical protein compare
Psest_1544 -0.7 -3.1 single-stranded-DNA-specific exonuclease RecJ compare
Psest_1218 -0.7 -2.2 Predicted endonuclease containing a URI domain compare
Psest_1152 -0.7 -2.0 hypothetical protein compare
Psest_0706 -0.7 -2.9 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0305 -0.7 -2.0 RNA methyltransferase, RsmE family compare
Psest_2645 -0.7 -2.7 Transcriptional regulator compare
Psest_4220 -0.7 -1.4 Protein of unknown function (DUF2782). compare
Psest_1567 -0.7 -1.8 Transcriptional regulator compare
Psest_1535 -0.7 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_1431 -0.7 -1.7 hypothetical protein compare
Psest_3317 -0.7 -2.1 Phosphotransferase System HPr (HPr) Family compare
Psest_3480 -0.7 -1.0 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1392 -0.7 -2.2 ABC-type uncharacterized transport systems, ATPase components compare
Psest_1772 -0.6 -2.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0212 -0.6 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_2907 -0.6 -0.7 Protein of unknown function (DUF3618). compare
Psest_2334 -0.6 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_2304 -0.6 -0.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1504 -0.6 -1.5 tol-pal system protein YbgF compare
Psest_0485 -0.6 -1.8 clan AA aspartic protease, TIGR02281 family compare
Psest_3719 -0.6 -4.0 type IV pilus assembly protein PilM compare
Psest_1986 -0.6 -0.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_3816 -0.6 -0.5 DNA-directed RNA polymerase, omega subunit compare
Psest_3715 -0.6 -4.8 type IV pilus secretin (or competence protein) PilQ compare
Psest_3795 -0.6 -2.6 Glycine/D-amino acid oxidases (deaminating) compare
Psest_3100 -0.6 -2.3 RNA polymerase sigma factor RpoE compare
Psest_3878 -0.6 -1.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1176 -0.6 -2.0 Urea transporter compare
Psest_1226 -0.6 -1.0 hypothetical protein compare
Psest_3813 -0.6 -2.9 ribonuclease PH compare
Psest_4134 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1197 -0.6 -1.9 Ureidoglycolate hydrolase compare
Psest_1136 -0.6 -2.6 Prolyl oligopeptidase family. compare
Psest_2001 -0.6 -0.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3562 -0.6 -1.2 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_3860 -0.6 -1.7 Predicted permeases compare
Psest_3323 -0.6 -1.8 ribonuclease, Rne/Rng family compare
Psest_2652 -0.6 -2.3 Protein of unknown function (DUF1653). compare
Psest_1048 -0.6 -2.9 Uncharacterized paraquat-inducible protein A compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Dimethyl Sulfoxide across organisms