Experiment set11H31 for Pseudomonas stutzeri RCH2

Compare to:

LB with Dimethyl Sulfoxide 5 vol%

200 most important genes:

  gene name fitness t score description  
Psest_3648 -3.8 -9.1 anthranilate phosphoribosyltransferase compare
Psest_0062 -3.5 -12.3 tryptophan synthase, alpha subunit compare
Psest_2718 -3.4 -2.2 hypothetical protein compare
Psest_2584 -3.3 -5.8 Phosphoribosylanthranilate isomerase compare
Psest_2025 -3.2 -1.5 cold shock domain protein CspD compare
Psest_0063 -3.2 -11.6 tryptophan synthase, beta subunit compare
Psest_3647 -3.1 -9.3 Indole-3-glycerol phosphate synthase compare
Psest_2945 -2.9 -1.7 septum site-determining protein MinC compare
Psest_0309 -2.7 -1.7 RND family efflux transporter, MFP subunit compare
Psest_0257 -2.3 -4.3 Predicted Zn-dependent peptidases compare
Psest_3650 -2.2 -10.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1012 -2.0 -5.8 Signal transduction histidine kinase compare
Psest_3351 -1.9 -5.5 peptide chain release factor 3 compare
Psest_0725 -1.9 -2.2 Negative regulator of beta-lactamase expression compare
Psest_1814 -1.9 -11.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1161 -1.6 -2.3 E3 Ubiquitin ligase. compare
Psest_3069 -1.6 -3.1 3-oxoadipate enol-lactonase compare
Psest_2561 -1.6 -1.2 hypothetical protein compare
Psest_1496 -1.6 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_2766 -1.5 -1.2 hypothetical protein compare
Psest_4191 -1.5 -3.3 Transcriptional regulator compare
Psest_3860 -1.5 -3.2 Predicted permeases compare
Psest_0575 -1.5 -1.1 HrpA-like helicases compare
Psest_4201 -1.5 -2.5 general secretion pathway protein F compare
Psest_0515 -1.5 -4.5 rare lipoprotein A compare
Psest_2988 -1.5 -6.1 aspartate kinase, monofunctional class compare
Psest_0413 -1.4 -4.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0306 -1.4 -10.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3767 -1.4 -3.8 tyrosine recombinase XerC compare
Psest_4406 -1.4 -1.2 hypothetical protein compare
Psest_1179 -1.4 -1.9 2-hydroxy-3-oxopropionate reductase compare
Psest_0411 -1.4 -6.8 biotin synthetase compare
Psest_2333 -1.4 -1.1 Protein of unknown function (DUF3359). compare
Psest_3720 -1.3 -10.4 penicillin-binding protein, 1A family compare
Psest_4219 -1.3 -2.4 DNA polymerase I compare
Psest_1008 -1.3 -1.2 hypothetical protein compare
Psest_1510 -1.3 -2.5 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0212 -1.3 -2.3 exodeoxyribonuclease V, gamma subunit compare
Psest_0521 -1.3 -7.4 lytic murein transglycosylase compare
Psest_4310 -1.3 -1.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1167 -1.3 -1.1 hypothetical protein compare
Psest_2764 -1.2 -1.3 hypothetical protein compare
Psest_4103 -1.2 -1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_3177 -1.2 -1.7 hypothetical protein compare
Psest_3809 -1.2 -2.7 hypothetical protein compare
Psest_4134 -1.2 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0412 -1.2 -5.6 8-amino-7-oxononanoate synthase compare
Psest_2726 -1.2 -1.6 Rhodanese-related sulfurtransferase compare
Psest_2225 -1.2 -2.2 Diacylglycerol kinase compare
Psest_4152 -1.2 -3.3 flagellar basal-body rod protein FlgC compare
Psest_1677 -1.2 -1.7 Protein-tyrosine-phosphatase compare
Psest_3649 -1.2 -4.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2906 -1.2 -2.9 tRNA_Thr_CGT compare
Psest_3910 -1.2 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_2585 -1.2 -0.8 pseudouridylate synthase I compare
Psest_4090 -1.2 -2.2 diaminobutyrate acetyltransferase compare
Psest_3960 -1.2 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0673 -1.2 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3301 -1.1 -2.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_1505 -1.1 -1.5 Organic radical activating enzymes compare
Psest_3400 -1.1 -1.0 Copper resistance protein D. compare
Psest_1724 -1.1 -1.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0191 -1.1 -0.8 PAS domain S-box compare
Psest_2590 -1.1 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_1284 -1.1 -4.1 exodeoxyribonuclease VII, large subunit compare
Psest_1804 -1.1 -1.7 Superfamily II DNA and RNA helicases compare
Psest_0950 -1.0 -3.1 hypothetical protein compare
Psest_4298 -1.0 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0558 -1.0 -0.8 urease, beta subunit compare
Psest_0015 -1.0 -1.7 Tetratricopeptide repeat. compare
Psest_2613 -1.0 -1.4 hypothetical protein compare
Psest_4005 -1.0 -3.6 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_1986 -1.0 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1567 -1.0 -3.0 Transcriptional regulator compare
Psest_1218 -1.0 -3.4 Predicted endonuclease containing a URI domain compare
Psest_3931 -1.0 -3.3 Signal transduction histidine kinase, nitrogen specific compare
Psest_3810 -1.0 -1.2 orotate phosphoribosyltransferase compare
Psest_0442 -1.0 -1.8 ATPases of the AAA+ class compare
Psest_3803 -1.0 -1.1 DNA repair protein radc compare
Psest_2238 -1.0 -2.1 hypothetical protein compare
Psest_3357 -1.0 -2.1 Predicted pyrophosphatase compare
Psest_2334 -1.0 -7.0 Uncharacterized protein conserved in bacteria compare
Psest_3908 -1.0 -1.0 Cytochrome c553 compare
Psest_3862 -0.9 -5.9 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0440 -0.9 -2.2 hypothetical protein compare
Psest_0292 -0.9 -1.9 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2711 -0.9 -1.3 PilZ domain. compare
Psest_1305 -0.9 -1.6 Heat shock protein compare
Psest_3286 -0.9 -4.0 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3270 -0.9 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1919 -0.9 -2.8 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_4128 -0.9 -1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1870 -0.9 -0.6 Transcriptional regulators compare
Psest_2308 -0.9 -0.7 Predicted Fe-S protein compare
Psest_0706 -0.9 -4.2 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0609 -0.9 -1.2 hypothetical protein compare
Psest_0415 -0.9 -2.7 dethiobiotin synthase compare
Psest_1349 -0.9 -1.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2088 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0857 -0.9 -1.2 Membrane transporters of cations and cationic drugs compare
Psest_3813 -0.9 -4.6 ribonuclease PH compare
Psest_1818 -0.9 -5.6 GDP-mannose 4,6-dehydratase compare
Psest_0504 -0.9 -3.6 Putative effector of murein hydrolase LrgA compare
Psest_4370 -0.9 -2.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3823 -0.9 -2.6 hypothetical protein compare
Psest_3331 -0.9 -2.6 rare lipoprotein A compare
Psest_0115 -0.9 -1.0 Predicted integral membrane protein compare
Psest_0660 -0.8 -2.1 Methyl-accepting chemotaxis protein compare
Psest_3080 -0.8 -1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_0285 -0.8 -4.4 pilus retraction protein PilT compare
Psest_1772 -0.8 -2.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1602 -0.8 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1809 -0.8 -4.6 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2643 -0.8 -1.6 Beta-glucosidase-related glycosidases compare
Psest_3795 -0.8 -4.5 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1532 -0.8 -2.5 DNA recombination-dependent growth factor C compare
Psest_1185 -0.8 -2.3 heavy metal response regulator compare
Psest_0778 -0.8 -2.3 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_1863 -0.8 -2.3 hypothetical protein compare
Psest_2035 -0.8 -3.2 crcB protein compare
Psest_2096 -0.8 -1.7 Domain of unknown function (DUF1883). compare
Psest_1206 -0.8 -2.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2946 -0.8 -1.8 septum site-determining protein MinD compare
Psest_0414 -0.8 -2.6 biotin biosynthesis protein BioC compare
Psest_0526 -0.8 -1.6 hypothetical protein compare
Psest_2265 -0.8 -1.9 Outer membrane protein compare
Psest_2911 -0.8 -1.2 Protein of unknown function (DUF2945). compare
Psest_2565 -0.8 -1.5 Transcriptional regulator compare
Psest_3669 -0.8 -2.8 Uncharacterized protein affecting Mg2+/Co2+ transport compare
Psest_3827 -0.8 -2.7 Transcriptional regulator compare
Psest_3189 -0.8 -2.3 hypothetical protein compare
Psest_3106 -0.8 -2.4 Predicted outer membrane protein compare
Psest_3146 -0.8 -0.8 hypothetical protein compare
Psest_2001 -0.8 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0705 -0.7 -5.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2394 -0.7 -1.7 TIGR01777 family protein compare
Psest_1856 -0.7 -1.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0260 -0.7 -1.0 Cell division protein compare
Psest_0491 -0.7 -4.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_2909 -0.7 -2.3 hypothetical protein compare
Psest_3275 -0.7 -2.5 Stringent starvation protein B compare
Psest_1822 -0.7 -3.7 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1354 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_4276 -0.7 -1.4 hypothetical protein compare
Psest_1504 -0.7 -2.3 tol-pal system protein YbgF compare
Psest_2681 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1463 -0.7 -0.6 SufE protein probably involved in Fe-S center assembly compare
Psest_4390 -0.7 -2.4 hypothetical protein compare
Psest_1076 -0.7 -2.8 acetyl-CoA acetyltransferases compare
Psest_1824 -0.7 -1.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3399 -0.7 -0.6 Uncharacterized protein conserved in bacteria compare
Psest_2460 -0.7 -0.7 hypothetical protein compare
Psest_2332 -0.7 -5.0 Predicted acetyltransferase compare
Psest_0814 -0.7 -1.7 MoxR-like ATPases compare
Psest_0662 -0.7 -1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4350 -0.7 -1.7 Transcriptional regulators of sugar metabolism compare
Psest_3806 -0.7 -3.3 Phosphomannomutase compare
Psest_1163 -0.7 -1.7 diguanylate cyclase (GGDEF) domain compare
Psest_1695 -0.7 -1.8 Tfp pilus assembly protein PilZ compare
Psest_2331 -0.7 -3.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_1050 -0.7 -4.6 Paraquat-inducible protein B compare
Psest_3816 -0.7 -0.6 DNA-directed RNA polymerase, omega subunit compare
Psest_3840 -0.7 -1.4 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_2719 -0.7 -1.1 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1397 -0.7 -1.3 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3129 -0.7 -0.7 tyrosine recombinase XerD compare
Psest_2847 -0.7 -1.9 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_2637 -0.6 -0.6 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0401 -0.6 -1.1 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_4124 -0.6 -1.9 hypothetical protein compare
Psest_3372 -0.6 -3.5 Tfp pilus assembly protein PilW compare
Psest_3047 -0.6 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3890 -0.6 -0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1877 -0.6 -2.2 AraC-type DNA-binding domain-containing proteins compare
Psest_0207 -0.6 -1.5 hypothetical protein compare
Psest_2046 -0.6 -1.3 hypothetical protein compare
Psest_3719 -0.6 -3.4 type IV pilus assembly protein PilM compare
Psest_2594 -0.6 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4044 -0.6 -1.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1775 -0.6 -1.9 Predicted ATPase (AAA+ superfamily) compare
Psest_3128 -0.6 -1.7 Protein-disulfide isomerase compare
Psest_1540 -0.6 -0.9 biotin-dependent carboxylase uncharacterized domain compare
Psest_1217 -0.6 -2.5 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_4363 -0.6 -2.8 ATPases involved in chromosome partitioning compare
Psest_0031 -0.6 -1.0 Uncharacterized conserved protein compare
Psest_0998 -0.6 -1.3 poly(A) polymerase compare
Psest_3869 -0.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_3963 -0.6 -4.1 PAS domain S-box compare
Psest_3167 -0.6 -3.0 hypothetical protein compare
Psest_1562 -0.6 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1048 -0.6 -3.4 Uncharacterized paraquat-inducible protein A compare
Psest_2304 -0.6 -0.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1101 -0.6 -2.2 Uncharacterized conserved protein compare
Psest_1551 -0.6 -1.2 Integral membrane protein, interacts with FtsH compare
Psest_1087 -0.6 -0.7 uncharacterized peroxidase-related enzyme compare
Psest_3365 -0.6 -1.7 Predicted membrane protein compare
Psest_2343 -0.6 -1.4 Mg-dependent DNase compare
Psest_3983 -0.6 -2.5 Aldo/keto reductases, related to diketogulonate reductase compare
Psest_3401 -0.6 -2.4 DNA repair protein RadA compare
Psest_1746 -0.6 -2.9 Flagellar motor protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Dimethyl Sulfoxide across organisms