Experiment set11H31 for Pseudomonas stutzeri RCH2

Compare to:

LB with Dimethyl Sulfoxide 5 vol%

200 most detrimental genes:

  gene name fitness t score description  
Psest_0243 +2.0 2.6 hypothetical protein compare
Psest_3884 +1.8 2.3 Signal transduction histidine kinase compare
Psest_1840 +1.7 15.9 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4010 +1.7 2.1 peroxiredoxin, OsmC subfamily compare
Psest_1595 +1.5 2.5 Copper chaperone compare
Psest_3042 +1.5 1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_1661 +1.5 3.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4183 +1.5 2.3 PilZ domain. compare
Psest_3937 +1.5 4.6 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2532 +1.4 3.9 Uncharacterized protein conserved in bacteria compare
Psest_0693 +1.4 12.5 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0164 +1.3 1.3 Glutaredoxin, GrxC family compare
Psest_3550 +1.2 3.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_4196 +1.2 2.2 Type II secretory pathway, component PulK compare
Psest_0697 +1.2 3.1 ribosomal protein L9 compare
Psest_0999 +1.2 3.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0165 +1.2 2.4 protein-export chaperone SecB compare
Psest_1115 +1.2 2.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0872 +1.2 1.8 Helix-turn-helix. compare
Psest_3790 +1.1 6.7 Cytochrome c5 compare
Psest_2470 +1.1 2.0 hypothetical protein compare
Psest_0722 +1.1 5.9 Predicted ATPase compare
Psest_3216 +1.1 9.8 diguanylate cyclase (GGDEF) domain compare
Psest_2232 +1.1 7.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4003 +1.1 4.3 TIGR00153 family protein compare
Psest_2975 +1.1 3.6 tRNA_Arg_CCT compare
Psest_0498 +1.1 1.7 ribosome small subunit-dependent GTPase A compare
Psest_0675 +1.1 3.1 Predicted periplasmic lipoprotein compare
Psest_0325 +1.0 7.9 Putative threonine efflux protein compare
Psest_2527 +1.0 4.7 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1663 +1.0 2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3391 +1.0 2.2 Uncharacterized protein conserved in bacteria compare
Psest_4335 +1.0 1.6 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0028 +1.0 3.9 Coproporphyrinogen III oxidase compare
Psest_0066 +1.0 1.1 Protein of unknown function (DUF3060). compare
Psest_4043 +1.0 1.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0510 +1.0 2.2 iojap-like ribosome-associated protein compare
Psest_2288 +1.0 3.7 trigger factor compare
Psest_3217 +0.9 8.8 PAS domain S-box compare
Psest_1657 +0.9 1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2066 +0.9 1.4 ABC-type uncharacterized transport system, permease component compare
Psest_0959 +0.9 1.7 Uncharacterized protein conserved in bacteria compare
Psest_0466 +0.9 3.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2104 +0.9 1.5 IscR-regulated protein YhgI compare
Psest_2405 +0.9 2.9 NAD-dependent protein deacetylases, SIR2 family compare
Psest_3881 +0.9 1.4 hypothetical protein compare
Psest_0346 +0.9 1.8 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_3712 +0.9 4.6 Type II secretory pathway, component ExeA (predicted ATPase) compare
Psest_2538 +0.9 1.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2000 +0.9 2.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2229 +0.9 1.5 Uncharacterized protein conserved in bacteria compare
Psest_1791 +0.9 2.2 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_4158 +0.9 2.2 Flagellar motor protein compare
Psest_0765 +0.9 2.4 hypothetical protein compare
Psest_4293 +0.9 4.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3005 +0.8 2.5 Fructose-2,6-bisphosphatase compare
Psest_2772 +0.8 2.9 MIP family channel proteins compare
Psest_0737 +0.8 1.0 Cu(I)-responsive transcriptional regulator compare
Psest_2758 +0.8 1.4 Predicted transcriptional regulators compare
Psest_0717 +0.8 6.8 Protein of unknown function (DUF1631). compare
Psest_2325 +0.8 4.5 alpha-L-glutamate ligase-related protein compare
Psest_2907 +0.8 1.3 Protein of unknown function (DUF3618). compare
Psest_0831 +0.8 1.2 hypothetical protein compare
Psest_3114 +0.8 3.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2282 +0.8 1.2 Dihydroorotate dehydrogenase compare
Psest_0014 +0.8 2.0 PilZ domain. compare
Psest_1204 +0.8 1.3 Transcriptional regulators compare
Psest_3731 +0.8 5.8 exopolyphosphatase compare
Psest_4273 +0.8 4.2 Lysophospholipase compare
Psest_1366 +0.8 1.4 hypothetical protein compare
Psest_0367 +0.8 1.4 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_4343 +0.8 1.4 Protein of unknown function (DUF3301). compare
Psest_3768 +0.8 2.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_3882 +0.8 4.9 Opacity protein and related surface antigens compare
Psest_1498 +0.8 2.0 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1768 +0.8 2.1 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_3749 +0.7 4.8 Response regulator of the LytR/AlgR family compare
Psest_3700 +0.7 1.3 hypothetical protein compare
Psest_2622 +0.7 2.0 TadE-like protein. compare
Psest_0061 +0.7 1.7 hypothetical protein compare
Psest_1279 +0.7 1.9 hypothetical protein compare
Psest_0078 +0.7 0.6 hypothetical protein compare
Psest_1954 +0.7 1.8 hypothetical protein compare
Psest_3115 +0.7 3.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3084 +0.7 1.2 methyltransferase, putative compare
Psest_3974 +0.7 3.4 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_0958 +0.7 3.2 Oligoketide cyclase/lipid transport protein compare
Psest_3853 +0.7 1.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0837 +0.7 1.8 Putative lipid carrier protein compare
Psest_3367 +0.7 1.1 translation initation factor SUI1, putative, prokaryotic compare
Psest_2551 +0.7 4.4 1-aminocyclopropane-1-carboxylate deaminase compare
Psest_0805 +0.7 1.8 hypothetical protein compare
Psest_2530 +0.7 2.5 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_0969 +0.7 1.2 transcription elongation factor GreA compare
Psest_2324 +0.7 4.9 hypothetical protein compare
Psest_3045 +0.7 0.9 Cold shock proteins compare
Psest_0520 +0.7 0.7 hypothetical protein compare
Psest_2901 +0.7 1.3 hypothetical protein compare
Psest_1860 +0.7 1.3 Uncharacterized conserved protein compare
Psest_4008 +0.7 5.2 PAS domain S-box compare
Psest_4382 +0.7 5.4 hypothetical protein compare
Psest_4315 +0.7 1.0 ABC-type metal ion transport system, permease component compare
Psest_3563 +0.7 2.6 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_1884 +0.7 1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3883 +0.7 3.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3060 +0.7 2.3 hypothetical protein compare
Psest_0993 +0.7 3.9 Glucose-6-phosphate isomerase compare
Psest_1065 +0.7 1.8 hypothetical protein compare
Psest_4080 +0.7 2.1 Carbonic anhydrase compare
Psest_2786 +0.7 0.8 Domain of unknown function (DUF3597). compare
Psest_3936 +0.6 2.0 ATP-dependent protease HslVU, peptidase subunit compare
Psest_1511 +0.6 2.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0487 +0.6 1.8 Uncharacterized protein conserved in bacteria compare
Psest_0013 +0.6 2.7 Lauroyl/myristoyl acyltransferase compare
Psest_1174 +0.6 3.9 Hemoglobin-like flavoprotein compare
Psest_3151 +0.6 1.6 hypothetical protein compare
Psest_2894 +0.6 1.2 addiction module antidote protein, HigA family compare
Psest_0743 +0.6 2.2 adenosine deaminase compare
Psest_3762 +0.6 2.7 iron donor protein CyaY compare
Psest_0152 +0.6 1.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_3002 +0.6 1.1 Putative translation initiation inhibitor, yjgF family compare
Psest_1597 +0.6 1.8 Protein of unknown function (DUF2933). compare
Psest_3192 +0.6 3.1 diguanylate cyclase (GGDEF) domain compare
Psest_0172 +0.6 2.7 Uncharacterized protein conserved in bacteria compare
Psest_3531 +0.6 0.4 Peptidase propeptide and YPEB domain. compare
Psest_3922 +0.6 2.7 Response regulator of citrate/malate metabolism compare
Psest_0970 +0.6 1.5 hypothetical protein compare
Psest_2531 +0.6 4.1 cytochrome c oxidase accessory protein FixG compare
Psest_0823 +0.6 1.9 Transcriptional regulators compare
Psest_2344 +0.6 2.0 Methyl-accepting chemotaxis protein compare
Psest_2500 +0.6 1.2 hypothetical protein compare
Psest_2778 +0.6 1.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3174 +0.6 4.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0437 +0.6 1.6 hypothetical protein compare
Psest_2647 +0.6 0.7 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_3998 +0.6 2.8 glutamate--cysteine ligase compare
Psest_2810 +0.6 2.1 5'/3'-nucleotidase SurE compare
Psest_3975 +0.6 4.3 Signal transduction histidine kinase compare
Psest_0103 +0.6 2.1 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_3471 +0.6 2.1 Thermostable hemolysin. compare
Psest_2545 +0.6 1.4 recombination protein RecR compare
Psest_3395 +0.6 0.9 hypothetical protein compare
Psest_1303 +0.6 1.5 hypothetical protein compare
Psest_0086 +0.6 1.4 hypothetical protein compare
Psest_3812 +0.6 1.7 Uncharacterized protein conserved in bacteria compare
Psest_2885 +0.6 1.5 Acyl carrier protein compare
Psest_0144 +0.6 2.3 Fe-S cluster protector protein compare
Psest_3413 +0.6 1.3 hypothetical protein compare
Psest_4139 +0.6 3.9 PAS domain S-box compare
Psest_0790 +0.6 2.1 Uncharacterized protein conserved in bacteria compare
Psest_0988 +0.6 1.0 Protein of unknown function (DUF2845). compare
Psest_1692 +0.6 2.6 conserved hypothetical protein, YceG family compare
Psest_0405 +0.6 2.5 Phytoene/squalene synthetase compare
Psest_3112 +0.6 1.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3170 +0.6 1.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1920 +0.6 0.6 Uncharacterized protein conserved in bacteria compare
Psest_2183 +0.6 1.7 Transcriptional regulator compare
Psest_2281 +0.6 2.1 Phosphoserine aminotransferase compare
Psest_3222 +0.6 1.2 Putative threonine efflux protein compare
Psest_0537 +0.6 1.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_4380 +0.6 3.1 Domain of Unknown Function (DUF326). compare
Psest_0192 +0.6 2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3117 +0.6 1.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0410 +0.6 2.5 Predicted amidophosphoribosyltransferases compare
Psest_4202 +0.6 2.3 general secretory pathway protein E compare
Psest_1292 +0.5 2.6 monothiol glutaredoxin, Grx4 family compare
Psest_2218 +0.5 0.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_2293 +0.5 0.8 hypothetical protein compare
Psest_0696 +0.5 2.2 hypothetical protein compare
Psest_2043 +0.5 2.7 Sel1 repeat. compare
Psest_4303 +0.5 1.1 HEAT repeat. compare
Psest_2148 +0.5 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3123 +0.5 1.1 dihydroorotase, homodimeric type compare
Psest_1056 +0.5 0.7 2-isopropylmalate synthase, bacterial type compare
Psest_1844 +0.5 3.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_1960 +0.5 0.9 Bacterial protein of unknown function (DUF903). compare
Psest_1588 +0.5 2.1 Uncharacterized protein involved in copper resistance compare
Psest_3828 +0.5 0.7 zinc-binding alcohol dehydrogenase family protein compare
Psest_1146 +0.5 2.0 Protein of unknown function, DUF481. compare
Psest_0385 +0.5 0.8 Conserved secreted protein compare
Psest_0032 +0.5 3.6 D-alanyl-D-alanine carboxypeptidase compare
Psest_4287 +0.5 2.2 Predicted glutamine amidotransferases compare
Psest_4142 +0.5 0.6 hypothetical protein compare
Psest_2651 +0.5 1.6 DNA topoisomerase I, bacterial compare
Psest_3990 +0.5 2.7 PAP2 superfamily. compare
Psest_0316 +0.5 0.8 Cytochrome c556 compare
Psest_0506 +0.5 2.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_0529 +0.5 2.7 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0595 +0.5 1.4 Uncharacterized conserved protein compare
Psest_2341 +0.5 2.3 Lipase chaperone compare
Psest_3230 +0.5 2.0 Uncharacterized conserved protein compare
Psest_2323 +0.5 3.5 Uncharacterized protein conserved in archaea compare
Psest_0155 +0.5 2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1725 +0.5 3.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3455 +0.5 1.4 Dihaem cytochrome c. compare
Psest_3339 +0.5 2.0 Signal transduction histidine kinase compare
Psest_3333 +0.5 2.3 K+-dependent Na+/Ca+ exchanger related-protein compare
Psest_4006 +0.5 2.3 hypothetical protein compare
Psest_1945 +0.5 1.3 hypothetical protein compare
Psest_3010 +0.5 2.8 cobalamin biosynthesis protein CobD compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Dimethyl Sulfoxide across organisms