Experiment set11H3 for Pseudomonas stutzeri RCH2

Compare to:

LB with Paraquat dichloride 0.015 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_3648 -5.5 -6.6 anthranilate phosphoribosyltransferase compare
Psest_2584 -5.4 -5.8 Phosphoribosylanthranilate isomerase compare
Psest_2863 -5.3 -7.3 Transcriptional regulator compare
Psest_1492 -5.2 -5.0 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2862 -5.2 -8.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0062 -5.1 -14.0 tryptophan synthase, alpha subunit compare
Psest_2011 -5.0 -10.1 Predicted permease compare
Psest_1306 -4.6 -1.7 hypothetical protein compare
Psest_3647 -4.6 -6.9 Indole-3-glycerol phosphate synthase compare
Psest_0413 -4.4 -8.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0542 -4.3 -15.2 AMP nucleosidase compare
Psest_0063 -4.3 -11.6 tryptophan synthase, beta subunit compare
Psest_0119 -4.1 -2.7 hypothetical protein compare
Psest_0144 -3.9 -8.0 Fe-S cluster protector protein compare
Psest_0306 -3.8 -20.6 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_4219 -3.7 -2.1 DNA polymerase I compare
Psest_2304 -3.7 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0414 -3.6 -4.9 biotin biosynthesis protein BioC compare
Psest_0412 -3.5 -12.7 8-amino-7-oxononanoate synthase compare
Psest_3338 -3.5 -1.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2088 -3.4 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2037 -3.3 -5.7 uroporphyrin-III C-methyltransferase compare
Psest_1518 -3.3 -2.3 tRNA_Ser_CGA compare
Psest_0411 -3.2 -11.7 biotin synthetase compare
Psest_3884 -3.1 -0.8 Signal transduction histidine kinase compare
Psest_1496 -3.1 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3226 -3.0 -0.9 Predicted membrane protein compare
Psest_1087 -2.9 -1.0 uncharacterized peroxidase-related enzyme compare
Psest_4078 -2.9 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2538 -2.8 -1.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2682 -2.8 -5.4 fumarate hydratase, class II compare
Psest_3862 -2.7 -13.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3938 -2.7 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_0218 -2.6 -3.7 Acyl-CoA hydrolase compare
Psest_0028 -2.6 -4.3 Coproporphyrinogen III oxidase compare
Psest_2893 -2.6 -8.6 Arabinose efflux permease compare
Psest_1103 -2.5 -2.9 GTP-binding protein YchF compare
Psest_4201 -2.5 -2.3 general secretion pathway protein F compare
Psest_3303 -2.5 -5.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0845 -2.4 -0.7 hypothetical protein compare
Psest_0844 -2.4 -4.1 High-affinity Fe2+/Pb2+ permease compare
Psest_3304 -2.4 -5.3 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_4191 -2.4 -3.4 Transcriptional regulator compare
Psest_0740 -2.4 -2.0 Transcriptional regulator compare
Psest_3927 -2.4 -4.1 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0697 -2.4 -2.8 ribosomal protein L9 compare
Psest_0397 -2.4 -9.2 Small-conductance mechanosensitive channel compare
Psest_0719 -2.3 -6.3 Uncharacterized protein conserved in bacteria compare
Psest_1884 -2.3 -1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3937 -2.3 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_4298 -2.2 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2872 -2.2 -1.6 protein RecA compare
Psest_3979 -2.2 -2.1 Fructose-2,6-bisphosphatase compare
Psest_1204 -2.2 -2.6 Transcriptional regulators compare
Psest_3351 -2.2 -4.1 peptide chain release factor 3 compare
Psest_0575 -2.1 -0.7 HrpA-like helicases compare
Psest_2565 -2.1 -2.3 Transcriptional regulator compare
Psest_0852 -2.1 -5.9 glucose-6-phosphate 1-dehydrogenase compare
Psest_2090 -2.1 -2.3 Protein of unknown function (DUF2970). compare
Psest_3305 -2.1 -7.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3766 -2.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0846 -2.0 -2.5 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0359 -2.0 -2.3 Transcriptional regulators compare
Psest_1463 -2.0 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0357 -2.0 -2.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1642 -2.0 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_1724 -2.0 -2.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1814 -2.0 -12.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1282 -1.9 -1.5 Amidases related to nicotinamidase compare
Psest_4406 -1.9 -1.2 hypothetical protein compare
Psest_0958 -1.9 -6.7 Oligoketide cyclase/lipid transport protein compare
Psest_1031 -1.9 -6.4 Uncharacterized protein conserved in bacteria compare
Psest_0309 -1.9 -1.0 RND family efflux transporter, MFP subunit compare
Psest_1752 -1.9 -1.4 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0312 -1.9 -5.1 Superfamily II DNA and RNA helicases compare
Psest_1012 -1.8 -4.8 Signal transduction histidine kinase compare
Psest_3650 -1.8 -6.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0993 -1.8 -6.4 Glucose-6-phosphate isomerase compare
Psest_2645 -1.8 -4.9 Transcriptional regulator compare
Psest_3307 -1.8 -5.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0181 -1.7 -4.5 glycine cleavage system T protein compare
Psest_4042 -1.7 -1.9 hypothetical protein compare
Psest_3092 -1.7 -1.4 ribonuclease III, bacterial compare
Psest_0843 -1.7 -9.0 hypothetical protein compare
Psest_0015 -1.7 -2.3 Tetratricopeptide repeat. compare
Psest_3565 -1.7 -1.2 hypothetical protein compare
Psest_0969 -1.7 -1.7 transcription elongation factor GreA compare
Psest_3768 -1.7 -3.8 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_3936 -1.7 -3.1 ATP-dependent protease HslVU, peptidase subunit compare
Psest_2285 -1.7 -3.2 ATP-dependent protease La compare
Psest_0297 -1.7 -3.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0415 -1.6 -2.0 dethiobiotin synthase compare
Psest_1486 -1.6 -2.2 hypothetical protein compare
Psest_3306 -1.6 -3.3 conserved hypothetical integral membrane protein compare
Psest_0368 -1.6 -1.8 Transcriptional regulator compare
Psest_2708 -1.6 -6.1 transaldolase compare
Psest_2104 -1.6 -0.9 IscR-regulated protein YhgI compare
Psest_2017 -1.6 -3.8 Predicted acyltransferase compare
Psest_3536 -1.6 -1.0 hypothetical protein compare
Psest_4315 -1.6 -2.0 ABC-type metal ion transport system, permease component compare
Psest_3323 -1.6 -3.6 ribonuclease, Rne/Rng family compare
Psest_2953 -1.5 -1.6 Histone acetyltransferase compare
Psest_2712 -1.5 -3.7 Surface lipoprotein compare
Psest_2887 -1.5 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3476 -1.5 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1388 -1.5 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3767 -1.5 -3.8 tyrosine recombinase XerC compare
Psest_3222 -1.5 -1.6 Putative threonine efflux protein compare
Psest_2589 -1.5 -5.7 3-isopropylmalate dehydrogenase compare
Psest_2624 -1.5 -2.5 hypothetical protein compare
Psest_3698 -1.5 -5.1 Predicted exporter conserved
Psest_0498 -1.5 -0.9 ribosome small subunit-dependent GTPase A compare
Psest_2478 -1.5 -3.4 Na+/serine symporter compare
Psest_0673 -1.5 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0031 -1.4 -1.3 Uncharacterized conserved protein compare
Psest_3839 -1.4 -2.9 D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3860 -1.4 -2.3 Predicted permeases compare
Psest_1242 -1.4 -1.8 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1183 -1.4 -2.3 hydroxyisourate hydrolase compare
Psest_2248 -1.4 -1.8 Predicted transcriptional regulators compare
Psest_0310 -1.4 -2.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2901 -1.4 -1.4 hypothetical protein compare
Psest_0708 -1.4 -1.0 outer membrane assembly lipoprotein YfiO compare
Psest_4128 -1.4 -1.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4088 -1.4 -2.7 Transcriptional regulators compare
Psest_3824 -1.4 -2.6 Predicted membrane protein compare
Psest_3896 -1.4 -2.5 arsenite-activated ATPase ArsA compare
Psest_3649 -1.3 -3.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2333 -1.3 -0.6 Protein of unknown function (DUF3359). compare
Psest_3510 -1.3 -5.3 Na+-dependent transporters of the SNF family compare
Psest_3170 -1.3 -4.4 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2967 -1.3 -2.5 flagellar basal-body rod protein FlgC compare
Psest_3921 -1.3 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2757 -1.3 -1.0 hypothetical protein compare
Psest_2764 -1.3 -0.7 hypothetical protein compare
Psest_3317 -1.3 -2.7 Phosphotransferase System HPr (HPr) Family compare
Psest_3531 -1.3 -0.7 Peptidase propeptide and YPEB domain. compare
Psest_0872 -1.3 -0.9 Helix-turn-helix. compare
Psest_4316 -1.2 -1.7 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3024 -1.2 -3.2 cytochrome d oxidase, subunit II (cydB) compare
Psest_1050 -1.2 -6.8 Paraquat-inducible protein B compare
Psest_3913 -1.2 -2.2 hypothetical protein compare
Psest_2098 -1.2 -3.4 Predicted ATPase/kinase involved in NAD metabolism compare
Psest_1643 -1.2 -0.8 hypothetical protein compare
Psest_3881 -1.2 -0.8 hypothetical protein compare
Psest_0915 -1.2 -4.1 hypothetical protein compare
Psest_2946 -1.2 -2.3 septum site-determining protein MinD compare
Psest_2648 -1.2 -1.4 hypothetical protein compare
Psest_3301 -1.2 -1.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_3720 -1.2 -7.6 penicillin-binding protein, 1A family compare
Psest_3272 -1.2 -2.2 TIGR00252 family protein compare
Psest_1111 -1.2 -1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1491 -1.2 -2.0 Cold shock proteins compare
Psest_1595 -1.2 -0.9 Copper chaperone compare
Psest_3231 -1.2 -1.4 hypothetical protein compare
Psest_1327 -1.1 -5.4 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_4331 -1.1 -4.3 Uncharacterized conserved protein compare
Psest_3101 -1.1 -6.5 L-aspartate oxidase compare
Psest_1259 -1.1 -3.2 23S rRNA m2A2503 methyltransferase compare
Psest_1804 -1.1 -0.7 Superfamily II DNA and RNA helicases compare
Psest_4247 -1.1 -2.1 Serine/threonine protein phosphatase compare
Psest_1563 -1.1 -1.8 Protein of unknown function (DUF548). compare
Psest_2239 -1.1 -2.4 RES domain. compare
Psest_1522 -1.1 -1.4 hypothetical protein compare
Psest_3339 -1.1 -3.3 Signal transduction histidine kinase compare
Psest_2594 -1.1 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2983 -1.1 -1.4 hypothetical protein compare
Psest_1048 -1.1 -4.2 Uncharacterized paraquat-inducible protein A compare
Psest_2636 -1.1 -4.7 tryptophan synthase, beta subunit compare
Psest_1489 -1.1 -2.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3926 -1.1 -5.3 GTP-binding protein TypA/BipA compare
Psest_0515 -1.0 -2.5 rare lipoprotein A compare
Psest_3816 -1.0 -0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_2358 -1.0 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4309 -1.0 -2.2 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_3745 -1.0 -1.5 Uncharacterized enzyme of heme biosynthesis compare
Psest_2544 -1.0 -2.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0482 -1.0 -2.6 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_0141 -1.0 -2.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3478 -1.0 -1.0 Cytochrome B561 compare
Psest_4393 -1.0 -3.1 Capsule polysaccharide export protein compare
Psest_0260 -1.0 -0.8 Cell division protein compare
Psest_2316 -1.0 -4.8 phosphoenolpyruvate synthase compare
Psest_1335 -1.0 -6.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) compare
Psest_3922 -1.0 -2.1 Response regulator of citrate/malate metabolism compare
Psest_1742 -1.0 -3.2 Chemotaxis protein compare
Psest_3721 -1.0 -2.5 Malic enzyme compare
Psest_3535 -1.0 -1.8 hypothetical protein compare
Psest_0510 -1.0 -1.9 iojap-like ribosome-associated protein compare
Psest_2434 -1.0 -1.9 Protein of unknown function (DUF2892). compare
Psest_1360 -1.0 -2.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_4314 -1.0 -2.0 ABC-type metal ion transport system, ATPase component compare
Psest_1359 -1.0 -2.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3151 -0.9 -1.4 hypothetical protein compare
Psest_3145 -0.9 -0.6 hypothetical protein compare
Psest_0507 -0.9 -2.8 Uncharacterized membrane-associated protein compare
Psest_0970 -0.9 -1.5 hypothetical protein compare
Psest_4307 -0.9 -1.4 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3383 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3578 -0.9 -5.9 Catalase conserved


Specific Phenotypes

For 10 genes in this experiment

For stress Paraquat dichloride in Pseudomonas stutzeri RCH2

For stress Paraquat dichloride across organisms