Experiment set11H15 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium perchlorate monohydrate 25 mM

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.0 -6.0 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_4219 -3.8 -2.6 DNA polymerase I compare
Psest_3648 -3.7 -11.3 anthranilate phosphoribosyltransferase compare
Psest_0062 -3.6 -13.7 tryptophan synthase, alpha subunit compare
Psest_2584 -3.6 -7.9 Phosphoribosylanthranilate isomerase compare
Psest_0063 -3.4 -13.0 tryptophan synthase, beta subunit compare
Psest_3647 -3.2 -8.7 Indole-3-glycerol phosphate synthase compare
Psest_2025 -3.1 -1.5 cold shock domain protein CspD compare
Psest_3938 -2.8 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_3129 -2.8 -1.5 tyrosine recombinase XerD compare
Psest_0520 -2.7 -1.0 hypothetical protein compare
Psest_2304 -2.7 -1.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0028 -2.5 -4.1 Coproporphyrinogen III oxidase compare
Psest_0218 -2.5 -4.4 Acyl-CoA hydrolase compare
Psest_1496 -2.4 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_3377 -2.4 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4201 -2.3 -3.0 general secretion pathway protein F compare
Psest_2872 -2.2 -2.1 protein RecA compare
Psest_0212 -2.2 -2.6 exodeoxyribonuclease V, gamma subunit compare
Psest_3351 -2.2 -4.5 peptide chain release factor 3 compare
Psest_1235 -2.1 -7.7 Leucyl aminopeptidase compare
Psest_2329 -2.0 -12.2 Transcriptional regulator compare
Psest_3913 -2.0 -4.3 hypothetical protein compare
Psest_4078 -2.0 -2.1 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0182 -1.9 -6.3 glycine cleavage system H protein compare
Psest_0697 -1.9 -2.8 ribosomal protein L9 compare
Psest_0164 -1.9 -1.0 Glutaredoxin, GrxC family compare
Psest_3645 -1.8 -9.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1012 -1.8 -4.9 Signal transduction histidine kinase compare
Psest_0357 -1.7 -2.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1056 -1.7 -2.2 2-isopropylmalate synthase, bacterial type compare
Psest_0498 -1.7 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_2531 -1.7 -10.9 cytochrome c oxidase accessory protein FixG compare
Psest_1640 -1.7 -10.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2527 -1.6 -6.3 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3767 -1.6 -4.2 tyrosine recombinase XerC compare
Psest_0097 -1.6 -2.3 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1660 -1.5 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0740 -1.5 -2.2 Transcriptional regulator compare
Psest_3070 -1.5 -2.8 3-oxoadipyl-CoA thiolase compare
Psest_0401 -1.5 -2.3 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0542 -1.5 -7.5 AMP nucleosidase compare
Psest_3047 -1.5 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3784 -1.5 -1.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1655 -1.5 -4.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2901 -1.5 -1.4 hypothetical protein compare
Psest_3862 -1.4 -8.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1999 -1.4 -1.1 pseudouridine synthase compare
Psest_1659 -1.4 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2532 -1.4 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_3707 -1.4 -3.7 Transcriptional regulator compare
Psest_0503 -1.4 -1.8 Acyl dehydratase compare
Psest_2229 -1.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1870 -1.4 -1.1 Transcriptional regulators compare
Psest_2460 -1.3 -2.1 hypothetical protein compare
Psest_4191 -1.3 -3.0 Transcriptional regulator compare
Psest_0297 -1.3 -3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2530 -1.3 -4.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2907 -1.3 -1.1 Protein of unknown function (DUF3618). compare
Psest_1463 -1.3 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_3069 -1.3 -1.7 3-oxoadipate enol-lactonase compare
Psest_0133 -1.3 -1.1 type VI secretion protein, VC_A0107 family compare
Psest_1849 -1.3 -3.1 Predicted glutamine amidotransferase compare
Psest_3650 -1.3 -7.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0601 -1.3 -1.2 hypothetical protein compare
Psest_4335 -1.3 -2.1 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3231 -1.2 -2.7 hypothetical protein compare
Psest_2651 -1.2 -3.4 DNA topoisomerase I, bacterial compare
Psest_2000 -1.2 -3.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3518 -1.2 -1.2 Transcriptional regulators compare
Psest_2037 -1.2 -3.4 uroporphyrin-III C-methyltransferase compare
Psest_3519 -1.2 -1.9 Uncharacterized conserved protein compare
Psest_0368 -1.2 -2.0 Transcriptional regulator compare
Psest_3850 -1.2 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1295 -1.2 -4.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3732 -1.2 -3.9 polyphosphate kinase 1 compare
Psest_2543 -1.2 -3.6 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_2711 -1.2 -2.3 PilZ domain. compare
Psest_4274 -1.2 -2.3 hypothetical protein compare
Psest_3212 -1.1 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1282 -1.1 -1.5 Amidases related to nicotinamidase compare
Psest_0144 -1.1 -5.2 Fe-S cluster protector protein compare
Psest_0511 -1.1 -1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0537 -1.1 -1.7 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0175 -1.1 -4.8 Xaa-Pro aminopeptidase compare
Psest_2590 -1.1 -1.0 3-isopropylmalate dehydratase, small subunit compare
Psest_0385 -1.1 -1.6 Conserved secreted protein compare
Psest_3991 -1.1 -2.4 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1082 -1.1 -1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0998 -1.1 -2.0 poly(A) polymerase compare
Psest_2046 -1.1 -3.0 hypothetical protein compare
Psest_1532 -1.1 -2.4 DNA recombination-dependent growth factor C compare
Psest_0952 -1.1 -2.2 Uncharacterized conserved protein compare
Psest_4044 -1.1 -1.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_1804 -1.1 -1.2 Superfamily II DNA and RNA helicases compare
Psest_0489 -1.1 -1.7 phosphoserine phosphatase SerB compare
Psest_2488 -1.0 -3.2 Predicted membrane protein compare
Psest_3145 -1.0 -1.1 hypothetical protein compare
Psest_2566 -1.0 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_1230 -1.0 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1306 -1.0 -1.0 hypothetical protein compare
Psest_0449 -1.0 -6.4 Glutamine synthetase adenylyltransferase compare
Psest_0958 -1.0 -3.4 Oligoketide cyclase/lipid transport protein compare
Psest_4298 -1.0 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3100 -1.0 -2.5 RNA polymerase sigma factor RpoE compare
Psest_3780 -1.0 -3.4 Transcriptional regulator compare
Psest_2594 -1.0 -2.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3790 -1.0 -5.3 Cytochrome c5 compare
Psest_1656 -1.0 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1661 -1.0 -1.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1595 -1.0 -1.1 Copper chaperone compare
Psest_3937 -1.0 -1.3 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0650 -1.0 -3.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_0310 -1.0 -2.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1079 -1.0 -3.1 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_3042 -1.0 -0.6 Nitrate reductase cytochrome c-type subunit compare
Psest_2271 -1.0 -2.5 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1868 -1.0 -3.5 yecA family protein compare
Psest_2565 -1.0 -2.0 Transcriptional regulator compare
Psest_1772 -1.0 -2.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1524 -1.0 -2.2 Sel1 repeat. compare
Psest_0316 -1.0 -1.8 Cytochrome c556 compare
Psest_0869 -1.0 -2.0 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0060 -0.9 -1.8 Predicted Fe-S protein compare
Psest_1997 -0.9 -1.7 6-phosphogluconolactonase compare
Psest_2850 -0.9 -1.2 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0312 -0.9 -3.2 Superfamily II DNA and RNA helicases compare
Psest_1206 -0.9 -2.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1218 -0.9 -2.1 Predicted endonuclease containing a URI domain compare
Psest_4350 -0.9 -3.4 Transcriptional regulators of sugar metabolism compare
Psest_0174 -0.9 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_1691 -0.9 -2.1 aminodeoxychorismate lyase compare
Psest_4010 -0.9 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_1354 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2810 -0.9 -2.9 5'/3'-nucleotidase SurE compare
Psest_2557 -0.9 -1.1 Protein of unknown function (DUF2474). compare
Psest_1161 -0.9 -1.6 E3 Ubiquitin ligase. compare
Psest_1421 -0.9 -2.0 Glutathione S-transferase compare
Psest_1600 -0.9 -1.0 hypothetical protein compare
Psest_0243 -0.9 -0.6 hypothetical protein compare
Psest_3317 -0.9 -2.3 Phosphotransferase System HPr (HPr) Family compare
Psest_1428 -0.9 -2.5 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1525 -0.9 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0442 -0.9 -1.4 ATPases of the AAA+ class compare
Psest_4256 -0.9 -2.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0744 -0.9 -0.6 Uncharacterized conserved protein compare
Psest_0848 -0.9 -1.3 hypothetical protein compare
Psest_3339 -0.8 -3.0 Signal transduction histidine kinase compare
Psest_2845 -0.8 -4.9 [Protein-PII] uridylyltransferase compare
Psest_0722 -0.8 -3.4 Predicted ATPase compare
Psest_3721 -0.8 -3.5 Malic enzyme compare
Psest_3383 -0.8 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2909 -0.8 -1.8 hypothetical protein compare
Psest_1788 -0.8 -5.1 TIGR01244 family protein compare
Psest_3151 -0.8 -2.1 hypothetical protein compare
Psest_4045 -0.8 -3.1 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen compare
Psest_2348 -0.8 -1.8 urea carboxylase-associated protein 2 compare
Psest_0086 -0.8 -2.2 hypothetical protein compare
Psest_2266 -0.8 -1.8 hypothetical protein compare
Psest_2643 -0.8 -1.3 Beta-glucosidase-related glycosidases compare
Psest_3944 -0.8 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1601 -0.8 -1.2 Signal transduction histidine kinase compare
Psest_0120 -0.8 -2.2 hypothetical protein compare
Psest_3793 -0.8 -3.2 D-alanine dehydrogenase (EC 1.4.99.-) (from data) compare
Psest_0810 -0.8 -3.3 uroporphyrin-III C-methyltransferase compare
Psest_4080 -0.8 -2.4 Carbonic anhydrase compare
Psest_3951 -0.8 -2.9 proline iminopeptidase, Neisseria-type subfamily compare
Psest_2358 -0.8 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0969 -0.8 -1.1 transcription elongation factor GreA compare
Psest_0359 -0.8 -1.8 Transcriptional regulators compare
Psest_1111 -0.8 -1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2104 -0.8 -1.3 IscR-regulated protein YhgI compare
Psest_3505 -0.8 -3.1 Superfamily II DNA and RNA helicases compare
Psest_3973 -0.8 -0.9 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2855 -0.8 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1855 -0.8 -4.2 cysteine synthase A compare
Psest_3684 -0.8 -4.0 Di- and tricarboxylate transporters compare
Psest_1366 -0.8 -1.1 hypothetical protein compare
Psest_0152 -0.8 -3.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_0919 -0.8 -1.3 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_4278 -0.8 -1.7 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3215 -0.8 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_1991 -0.8 -4.9 Glutathione S-transferase compare
Psest_2017 -0.8 -1.7 Predicted acyltransferase compare
Psest_0644 -0.8 -2.5 siderophore ferric iron reductase, AHA_1954 family compare
Psest_0526 -0.8 -2.6 hypothetical protein compare
Psest_0390 -0.8 -1.3 Short-chain dehydrogenases of various substrate specificities compare
Psest_2991 -0.7 -2.9 hypothetical protein compare
Psest_0485 -0.7 -1.6 clan AA aspartic protease, TIGR02281 family compare
Psest_2333 -0.7 -0.6 Protein of unknown function (DUF3359). compare
Psest_2725 -0.7 -1.5 hypothetical protein compare
Psest_1653 -0.7 -5.3 transcription-repair coupling factor (mfd) compare
Psest_1876 -0.7 -1.7 Predicted membrane protein compare
Psest_1932 -0.7 -3.0 nitrite extrusion protein (nitrite facilitator) compare
Psest_2544 -0.7 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3520 -0.7 -2.4 Short chain fatty acids transporter compare
Psest_1567 -0.7 -3.2 Transcriptional regulator compare
Psest_1204 -0.7 -1.8 Transcriptional regulators compare
Psest_0031 -0.7 -1.1 Uncharacterized conserved protein compare
Psest_4151 -0.7 -1.5 Flagellar hook capping protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Sodium perchlorate monohydrate across organisms