Experiment set11H15 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium perchlorate monohydrate 25 mM

200 most detrimental genes:

  gene name fitness t score description  
Psest_3484 +2.6 7.5 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3486 +2.4 18.1 respiratory nitrate reductase, alpha subunit compare
Psest_2999 +2.4 8.2 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3485 +2.2 12.8 nitrate reductase, beta subunit compare
Psest_3480 +2.2 5.6 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3479 +2.1 7.6 molybdenum cofactor synthesis domain compare
Psest_3000 +2.1 8.9 molybdate ABC transporter, permease protein compare
Psest_3170 +2.0 6.1 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1961 +2.0 11.3 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3483 +1.9 4.7 respiratory nitrate reductase, gamma subunit compare
Psest_1115 +1.9 5.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3490 +1.8 3.3 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3488 +1.8 5.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1511 +1.8 5.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1974 +1.7 5.2 integration host factor, alpha subunit compare
Psest_3998 +1.6 5.8 glutamate--cysteine ligase compare
Psest_1805 +1.6 3.3 integration host factor, beta subunit compare
Psest_3489 +1.5 7.2 hypothetical protein compare
Psest_3168 +1.4 3.3 Molybdopterin converting factor, large subunit compare
Psest_3001 +1.4 3.3 molybdenum ABC transporter, ATP-binding protein compare
Psest_1752 +1.3 2.4 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1863 +1.3 3.4 hypothetical protein compare
Psest_3487 +1.3 4.8 Nitrate/nitrite transporter compare
Psest_2976 +1.2 2.5 hypothetical protein compare
Psest_4406 +1.2 1.2 hypothetical protein compare
Psest_1540 +1.2 2.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_2944 +1.2 2.1 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_3697 +1.1 2.0 Outer membrane lipoprotein carrier protein LolA. compare
Psest_2726 +1.1 1.2 Rhodanese-related sulfurtransferase compare
Psest_3155 +1.1 2.5 hypothetical protein compare
Psest_0277 +1.1 1.9 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0409 +1.1 1.9 Putative homoserine kinase type II (protein kinase fold) compare
Psest_1303 +1.1 3.3 hypothetical protein compare
Psest_3762 +1.0 3.0 iron donor protein CyaY compare
Psest_3927 +1.0 3.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0066 +1.0 1.1 Protein of unknown function (DUF3060). compare
Psest_2585 +1.0 0.7 pseudouridylate synthase I compare
Psest_1313 +1.0 1.5 Uncharacterized conserved small protein compare
Psest_1602 +1.0 1.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0260 +1.0 1.4 Cell division protein compare
Psest_1518 +1.0 2.7 tRNA_Ser_CGA compare
Psest_3092 +1.0 1.6 ribonuclease III, bacterial compare
Psest_0191 +1.0 1.0 PAS domain S-box compare
Psest_2798 +1.0 1.4 Truncated hemoglobins compare
Psest_3934 +1.0 2.0 rRNA methylase, putative, group 2 compare
Psest_0367 +0.9 1.7 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3400 +0.9 1.6 Copper resistance protein D. compare
Psest_0083 +0.9 1.1 Uncharacterized conserved protein compare
Psest_3853 +0.9 2.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_1782 +0.9 1.9 Predicted transcriptional regulators compare
Psest_3904 +0.9 1.8 hypothetical protein compare
Psest_3399 +0.9 1.0 Uncharacterized protein conserved in bacteria compare
Psest_0609 +0.9 1.1 hypothetical protein compare
Psest_1710 +0.9 6.1 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_0988 +0.9 1.8 Protein of unknown function (DUF2845). compare
Psest_1565 +0.8 2.2 RND family efflux transporter, MFP subunit compare
Psest_3895 +0.8 2.2 hypothetical protein compare
Psest_3884 +0.8 0.8 Signal transduction histidine kinase compare
Psest_1733 +0.8 2.7 flagellar biosynthetic protein FliQ compare
Psest_3865 +0.8 1.5 Predicted integral membrane protein (DUF2269). compare
Psest_0655 +0.8 1.9 Chemotaxis signal transduction protein compare
Psest_3670 +0.8 4.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_4286 +0.8 4.7 Glutamine synthetase compare
Psest_1994 +0.8 1.7 Amidases related to nicotinamidase compare
Psest_3573 +0.8 2.2 dTDP-4-dehydrorhamnose reductase compare
Psest_1087 +0.8 0.8 uncharacterized peroxidase-related enzyme compare
Psest_1177 +0.7 2.2 pyruvate kinase compare
Psest_2067 +0.7 0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2752 +0.7 1.8 Uncharacterized protein conserved in bacteria compare
Psest_0389 +0.7 2.0 hypothetical protein compare
Psest_4042 +0.7 1.2 hypothetical protein compare
Psest_2581 +0.7 1.5 Uncharacterized protein conserved in bacteria compare
Psest_1179 +0.7 0.5 2-hydroxy-3-oxopropionate reductase compare
Psest_0305 +0.7 2.5 RNA methyltransferase, RsmE family compare
Psest_1226 +0.7 2.0 hypothetical protein compare
Psest_1292 +0.7 3.7 monothiol glutaredoxin, Grx4 family compare
Psest_3962 +0.7 1.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3207 +0.7 2.4 HopJ type III effector protein. compare
Psest_4289 +0.7 3.0 Transcriptional regulator compare
Psest_4051 +0.7 1.5 molybdenum-pterin binding domain compare
Psest_2756 +0.7 1.2 hypothetical protein compare
Psest_2939 +0.7 2.2 Predicted membrane protein compare
Psest_1588 +0.7 3.2 Uncharacterized protein involved in copper resistance compare
Psest_1574 +0.7 2.4 phenazine biosynthesis protein PhzF family compare
Psest_3301 +0.7 1.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_3415 +0.7 5.4 hypothetical protein compare
Psest_3072 +0.7 1.7 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit compare
Psest_1417 +0.7 1.1 hypothetical protein compare
Psest_1162 +0.6 0.8 Spermidine synthase compare
Psest_2282 +0.6 1.7 Dihydroorotate dehydrogenase compare
Psest_3449 +0.6 1.4 DJ-1 family protein compare
Psest_2956 +0.6 1.6 Uncharacterized conserved protein compare
Psest_1641 +0.6 2.9 MazG family protein compare
Psest_2648 +0.6 0.7 hypothetical protein compare
Psest_0078 +0.6 0.7 hypothetical protein compare
Psest_2447 +0.6 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3338 +0.6 0.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_4127 +0.6 2.4 Cyclopropane fatty acid synthase and related methyltransferases compare
Psest_1359 +0.6 2.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_0362 +0.6 2.2 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_2413 +0.6 1.9 Periplasmic protein TonB, links inner and outer membranes compare
Psest_1919 +0.6 1.8 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_1809 +0.6 3.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1700 +0.6 1.5 Transcriptional regulator compare
Psest_0170 +0.6 2.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_2405 +0.6 1.5 NAD-dependent protein deacetylases, SIR2 family compare
Psest_0595 +0.6 1.6 Uncharacterized conserved protein compare
Psest_2278 +0.6 1.5 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3230 +0.6 2.3 Uncharacterized conserved protein compare
Psest_2122 +0.6 1.0 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0637 +0.6 2.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_0209 +0.6 0.8 membrane protein AbrB duplication compare
Psest_3471 +0.6 2.4 Thermostable hemolysin. compare
Psest_4134 +0.6 1.0 Uncharacterized protein conserved in bacteria compare
Psest_2320 +0.6 2.2 2-methylcitrate synthase/citrate synthase II compare
Psest_2511 +0.6 2.8 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_2681 +0.6 1.0 Uncharacterized protein conserved in bacteria compare
Psest_0785 +0.6 1.3 Thioredoxin reductase compare
Psest_1305 +0.6 1.4 Heat shock protein compare
Psest_3188 +0.6 2.0 hypothetical protein compare
Psest_0227 +0.6 1.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_3031 +0.6 0.5 hypothetical protein compare
Psest_1183 +0.6 1.7 hydroxyisourate hydrolase compare
Psest_2748 +0.6 1.0 Transcriptional regulator compare
Psest_1367 +0.5 1.8 hypothetical protein compare
Psest_1562 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
Psest_3737 +0.5 2.0 Putative threonine efflux protein compare
Psest_1576 +0.5 2.3 Periplasmic glucans biosynthesis protein compare
Psest_3045 +0.5 1.3 Cold shock proteins compare
Psest_0575 +0.5 0.6 HrpA-like helicases compare
Psest_0146 +0.5 2.5 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_2764 +0.5 0.4 hypothetical protein compare
Psest_3950 +0.5 1.7 D-tyrosyl-tRNA(Tyr) deacylase compare
Psest_3067 +0.5 2.1 hypothetical protein compare
Psest_3731 +0.5 3.8 exopolyphosphatase compare
Psest_2370 +0.5 0.9 Protein of unknown function (DUF1652). compare
Psest_1877 +0.5 1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_1704 +0.5 0.6 Dehydrogenases (flavoproteins) compare
Psest_2415 +0.5 1.8 TolQ protein compare
Psest_0319 +0.5 2.4 Predicted ferric reductase compare
Psest_4204 +0.5 2.2 hypothetical protein compare
Psest_0778 +0.5 0.9 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_2146 +0.5 1.6 Transcriptional regulator compare
Psest_2233 +0.5 1.7 Methyl-accepting chemotaxis protein compare
Psest_3447 +0.5 0.6 Uncharacterized MobA-related protein compare
Psest_1053 +0.5 0.9 hypothetical protein compare
Psest_2605 +0.5 1.5 transcriptional activator RfaH compare
Psest_2101 +0.5 0.8 hypothetical protein compare
Psest_2324 +0.5 3.7 hypothetical protein compare
Psest_0716 +0.5 0.9 Protein of unknown function (DUF3094). compare
Psest_4243 +0.5 0.8 type VI secretion lipoprotein, VC_A0113 family compare
Psest_3286 +0.5 1.9 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_2243 +0.5 0.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3550 +0.5 1.0 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_0532 +0.5 2.1 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB compare
Psest_3536 +0.5 0.5 hypothetical protein compare
Psest_4135 +0.5 1.5 Ketosteroid isomerase homolog compare
Psest_2720 +0.5 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_4241 +0.5 2.0 hypothetical protein compare
Psest_1397 +0.5 1.2 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1884 +0.5 0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1631 +0.5 1.0 Uncharacterized conserved small protein compare
Psest_1763 +0.5 1.3 hypothetical protein compare
Psest_0145 +0.5 1.4 A/G-specific adenine glycosylase compare
Psest_3360 +0.5 2.0 hypothetical protein compare
Psest_0760 +0.5 1.5 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_0846 +0.5 1.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_1699 +0.5 1.4 Selenocysteine lyase compare
Psest_0100 +0.5 1.7 phosphonate ABC transporter, ATP-binding protein compare
Psest_1910 +0.5 1.1 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_3626 +0.5 1.8 hypothetical protein compare
Psest_3437 +0.5 1.1 diguanylate cyclase (GGDEF) domain compare
Psest_3158 +0.5 1.5 hypothetical protein compare
Psest_1349 +0.5 1.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3881 +0.5 0.7 hypothetical protein compare
Psest_2617 +0.5 1.9 Flp pilus assembly protein TadC compare
Psest_0393 +0.5 2.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3244 +0.5 1.0 Protein of unknown function (DUF2726). compare
Psest_3513 +0.5 1.3 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) compare
Psest_1824 +0.5 1.1 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3792 +0.5 0.8 Putative translation initiation inhibitor, yjgF family compare
Psest_1078 +0.5 1.5 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_1873 +0.5 0.9 Predicted permease, DMT superfamily compare
Psest_0497 +0.5 1.8 Flagellar motor protein compare
Psest_1735 +0.5 1.8 flagellar biosynthetic protein FlhB compare
Psest_3922 +0.4 1.4 Response regulator of citrate/malate metabolism compare
Psest_4168 +0.4 1.2 Flagellar FliJ protein. compare
Psest_0883 +0.4 1.7 hypothetical protein compare
Psest_3478 +0.4 0.8 Cytochrome B561 compare
Psest_4239 +0.4 2.7 Cytochrome b compare
Psest_1199 +0.4 1.9 OHCU decarboxylase compare
Psest_1592 +0.4 1.7 hypothetical protein compare
Psest_0134 +0.4 1.1 type VI secretion-associated protein, VC_A0119 family compare
Psest_1718 +0.4 1.5 flagellar hook-basal body complex protein FliE compare
Psest_2437 +0.4 1.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_0570 +0.4 1.7 hypothetical protein compare
Psest_2066 +0.4 0.6 ABC-type uncharacterized transport system, permease component compare
Psest_1787 +0.4 2.0 high affinity sulphate transporter 1 compare
Psest_0041 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Psest_0845 +0.4 0.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Sodium perchlorate monohydrate across organisms