Experiment set11H14 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium perchlorate monohydrate 12.5 mM

200 most important genes:

  gene name fitness t score description  
Psest_1492 -5.0 -4.9 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3648 -3.9 -10.1 anthranilate phosphoribosyltransferase compare
Psest_0063 -3.4 -13.2 tryptophan synthase, beta subunit compare
Psest_2584 -3.4 -6.1 Phosphoribosylanthranilate isomerase compare
Psest_3377 -3.4 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4219 -3.3 -3.2 DNA polymerase I compare
Psest_0062 -3.3 -10.5 tryptophan synthase, alpha subunit compare
Psest_3647 -3.2 -7.2 Indole-3-glycerol phosphate synthase compare
Psest_1496 -3.0 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_2748 -2.8 -1.9 Transcriptional regulator compare
Psest_4274 -2.8 -3.3 hypothetical protein compare
Psest_4078 -2.8 -2.4 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3129 -2.6 -1.4 tyrosine recombinase XerD compare
Psest_2945 -2.2 -1.4 septum site-determining protein MinC compare
Psest_1230 -2.2 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_2872 -2.2 -2.1 protein RecA compare
Psest_0958 -2.1 -6.1 Oligoketide cyclase/lipid transport protein compare
Psest_0537 -2.1 -2.7 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1463 -2.0 -1.3 SufE protein probably involved in Fe-S center assembly compare
Psest_2088 -2.0 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_4103 -1.9 -1.5 AraC-type DNA-binding domain-containing proteins compare
Psest_2304 -1.8 -1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0998 -1.8 -2.7 poly(A) polymerase compare
Psest_2424 -1.7 -2.3 K+ transport systems, NAD-binding component compare
Psest_0744 -1.7 -0.9 Uncharacterized conserved protein compare
Psest_0161 -1.7 -2.7 Membrane-bound metallopeptidase compare
Psest_4310 -1.6 -1.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2976 -1.6 -1.2 hypothetical protein compare
Psest_3938 -1.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2229 -1.6 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3650 -1.5 -7.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1999 -1.5 -1.2 pseudouridine synthase compare
Psest_2718 -1.5 -1.4 hypothetical protein compare
Psest_3767 -1.4 -4.0 tyrosine recombinase XerC compare
Psest_2101 -1.4 -1.9 hypothetical protein compare
Psest_3816 -1.4 -1.3 DNA-directed RNA polymerase, omega subunit compare
Psest_1008 -1.4 -1.1 hypothetical protein compare
Psest_0740 -1.4 -1.8 Transcriptional regulator compare
Psest_2532 -1.4 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_0515 -1.4 -4.2 rare lipoprotein A compare
Psest_1079 -1.4 -4.4 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_3519 -1.4 -2.6 Uncharacterized conserved protein compare
Psest_2530 -1.3 -3.8 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2531 -1.3 -8.4 cytochrome c oxidase accessory protein FixG compare
Psest_0357 -1.3 -2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3884 -1.2 -0.7 Signal transduction histidine kinase compare
Psest_3391 -1.2 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3185 -1.2 -1.9 MoxR-like ATPases compare
Psest_1293 -1.2 -1.1 VanZ like family. compare
Psest_3449 -1.2 -2.1 DJ-1 family protein compare
Psest_3339 -1.2 -4.0 Signal transduction histidine kinase compare
Psest_3338 -1.2 -1.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2527 -1.2 -4.8 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0207 -1.2 -3.0 hypothetical protein compare
Psest_2682 -1.2 -3.8 fumarate hydratase, class II compare
Psest_2585 -1.1 -0.8 pseudouridylate synthase I compare
Psest_2764 -1.1 -0.9 hypothetical protein compare
Psest_0028 -1.1 -2.7 Coproporphyrinogen III oxidase compare
Psest_0675 -1.1 -3.3 Predicted periplasmic lipoprotein compare
Psest_1783 -1.1 -2.7 Predicted transporter component compare
Psest_1354 -1.1 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0175 -1.1 -4.5 Xaa-Pro aminopeptidase compare
Psest_2757 -1.0 -1.1 hypothetical protein compare
Psest_3531 -1.0 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_3732 -1.0 -3.9 polyphosphate kinase 1 compare
Psest_3351 -1.0 -3.3 peptide chain release factor 3 compare
Psest_4340 -1.0 -3.2 Protein of unknown function (DUF3617). compare
Psest_2018 -1.0 -1.7 Uncharacterized conserved protein compare
Psest_2946 -1.0 -2.0 septum site-determining protein MinD compare
Psest_0737 -1.0 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_1270 -1.0 -3.1 hypothetical protein compare
Psest_1235 -1.0 -4.0 Leucyl aminopeptidase compare
Psest_0520 -1.0 -0.6 hypothetical protein compare
Psest_0542 -1.0 -5.4 AMP nucleosidase compare
Psest_0097 -1.0 -1.5 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1176 -1.0 -1.9 Urea transporter compare
Psest_1796 -1.0 -2.3 Predicted NAD/FAD-dependent oxidoreductase compare
Psest_1149 -1.0 -2.3 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_1661 -1.0 -1.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2048 -1.0 -1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3803 -1.0 -0.7 DNA repair protein radc compare
Psest_4128 -1.0 -0.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1659 -0.9 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2000 -0.9 -3.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3399 -0.9 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_0872 -0.9 -0.8 Helix-turn-helix. compare
Psest_2096 -0.9 -2.4 Domain of unknown function (DUF1883). compare
Psest_1052 -0.9 -2.0 Uncharacterized protein involved in chromosome partitioning compare
Psest_1657 -0.9 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1259 -0.9 -3.5 23S rRNA m2A2503 methyltransferase compare
Psest_2637 -0.9 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2457 -0.9 -2.4 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_1598 -0.9 -2.3 heavy metal response regulator compare
Psest_3222 -0.9 -1.5 Putative threonine efflux protein compare
Psest_3039 -0.9 -1.0 periplasmic nitrate reductase, NapE protein compare
Psest_0857 -0.9 -1.2 Membrane transporters of cations and cationic drugs compare
Psest_2726 -0.9 -0.9 Rhodanese-related sulfurtransferase compare
Psest_4044 -0.9 -1.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_4335 -0.9 -1.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_4209 -0.9 -1.6 Uncharacterized conserved small protein compare
Psest_2667 -0.9 -1.7 Uncharacterized protein involved in propionate catabolism compare
Psest_0466 -0.9 -2.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4184 -0.9 -2.8 hypothetical protein compare
Psest_1874 -0.9 -1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_2488 -0.9 -2.3 Predicted membrane protein compare
Psest_2590 -0.9 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_1849 -0.9 -2.6 Predicted glutamine amidotransferase compare
Psest_2428 -0.9 -2.1 hypothetical protein compare
Psest_1185 -0.9 -1.8 heavy metal response regulator compare
Psest_0309 -0.8 -0.8 RND family efflux transporter, MFP subunit compare
Psest_1879 -0.8 -1.8 Trk-type K+ transport systems, membrane components compare
Psest_0066 -0.8 -1.1 Protein of unknown function (DUF3060). compare
Psest_0514 -0.8 -2.8 lytic murein transglycosylase B compare
Psest_0115 -0.8 -0.9 Predicted integral membrane protein compare
Psest_0992 -0.8 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1238 -0.8 -3.2 Predicted membrane protein/domain compare
Psest_1655 -0.8 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3828 -0.8 -1.0 zinc-binding alcohol dehydrogenase family protein compare
Psest_3389 -0.8 -1.9 hypothetical protein compare
Psest_3645 -0.8 -4.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_4158 -0.8 -2.1 Flagellar motor protein compare
Psest_4285 -0.8 -3.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_1525 -0.8 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_1227 -0.8 -1.9 Predicted SAM-dependent methyltransferase compare
Psest_2329 -0.8 -5.1 Transcriptional regulator compare
Psest_2538 -0.8 -1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4098 -0.8 -1.9 Superfamily I DNA and RNA helicases compare
Psest_1147 -0.8 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4183 -0.8 -1.4 PilZ domain. compare
Psest_0257 -0.8 -1.1 Predicted Zn-dependent peptidases compare
Psest_1013 -0.8 -1.3 phosphoribosylamine--glycine ligase compare
Psest_2320 -0.8 -2.8 2-methylcitrate synthase/citrate synthase II compare
Psest_0485 -0.8 -1.4 clan AA aspartic protease, TIGR02281 family compare
Psest_0704 -0.8 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_2643 -0.8 -0.9 Beta-glucosidase-related glycosidases compare
Psest_0078 -0.8 -0.8 hypothetical protein compare
Psest_0718 -0.8 -2.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_3790 -0.8 -3.8 Cytochrome c5 compare
Psest_0484 -0.8 -2.0 hypothetical protein compare
Psest_3477 -0.8 -1.8 Signal transduction histidine kinase compare
Psest_1660 -0.7 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1744 -0.7 -2.8 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_1963 -0.7 -1.4 Peptidase inhibitor I78 family. compare
Psest_4163 -0.7 -1.2 hypothetical protein compare
Psest_1473 -0.7 -2.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2001 -0.7 -0.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4330 -0.7 -2.0 Protein of unknown function (DUF2909). compare
Psest_2011 -0.7 -3.7 Predicted permease compare
Psest_1626 -0.7 -2.4 Predicted integral membrane protein compare
Psest_1101 -0.7 -2.6 Uncharacterized conserved protein compare
Psest_3042 -0.7 -0.6 Nitrate reductase cytochrome c-type subunit compare
Psest_3456 -0.7 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1152 -0.7 -2.3 hypothetical protein compare
Psest_3853 -0.7 -1.7 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0212 -0.7 -0.9 exodeoxyribonuclease V, gamma subunit compare
Psest_1980 -0.7 -1.3 Uncharacterized conserved protein compare
Psest_0853 -0.7 -2.0 6-phosphogluconolactonase compare
Psest_3305 -0.7 -3.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1902 -0.7 -2.4 hypothetical protein compare
Psest_0120 -0.7 -2.6 hypothetical protein compare
Psest_3565 -0.7 -0.6 hypothetical protein compare
Psest_3777 -0.7 -1.5 diguanylate cyclase (GGDEF) domain compare
Psest_3693 -0.7 -1.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_3146 -0.7 -0.6 hypothetical protein compare
Psest_0837 -0.7 -1.8 Putative lipid carrier protein compare
Psest_2044 -0.7 -1.7 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_1707 -0.7 -3.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0644 -0.7 -1.8 siderophore ferric iron reductase, AHA_1954 family compare
Psest_0312 -0.7 -2.6 Superfamily II DNA and RNA helicases compare
Psest_2441 -0.7 -3.2 hypothetical protein compare
Psest_3793 -0.7 -2.5 D-alanine dehydrogenase (EC 1.4.99.-) (from data) compare
Psest_0145 -0.7 -2.1 A/G-specific adenine glycosylase compare
Psest_0155 -0.7 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3191 -0.7 -0.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_2720 -0.7 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1428 -0.7 -1.3 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_0722 -0.7 -2.8 Predicted ATPase compare
Psest_4201 -0.7 -0.7 general secretion pathway protein F compare
Psest_3697 -0.7 -1.1 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0831 -0.6 -0.6 hypothetical protein compare
Psest_3323 -0.6 -2.1 ribonuclease, Rne/Rng family compare
Psest_0020 -0.6 -1.5 K+ transport systems, NAD-binding component compare
Psest_2525 -0.6 -1.5 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_4063 -0.6 -1.8 sulfate ABC transporter, ATP-binding protein compare
Psest_2655 -0.6 -3.6 Protease II compare
Psest_3494 -0.6 -1.8 hypothetical protein compare
Psest_0015 -0.6 -1.5 Tetratricopeptide repeat. compare
Psest_3342 -0.6 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_2414 -0.6 -2.7 TolR protein compare
Psest_0609 -0.6 -0.8 hypothetical protein compare
Psest_2544 -0.6 -2.0 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2321 -0.6 -2.0 methylisocitrate lyase compare
Psest_2131 -0.6 -1.8 Acetyltransferases compare
Psest_0860 -0.6 -3.9 Glycosidases compare
Psest_0592 -0.6 -1.0 hypothetical protein compare
Psest_2901 -0.6 -0.8 hypothetical protein compare
Psest_3499 -0.6 -2.5 acyl-CoA thioesterase II compare
Psest_1788 -0.6 -4.2 TIGR01244 family protein compare
Psest_3861 -0.6 -1.6 Uncharacterized conserved protein compare
Psest_1635 -0.6 -5.1 Signal transduction histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Sodium perchlorate monohydrate across organisms