Experiment set11H12 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium nitrate 200 mM

200 most important genes:

  gene name fitness t score description  
Psest_2584 -5.6 -6.0 Phosphoribosylanthranilate isomerase compare
Psest_3648 -5.4 -6.4 anthranilate phosphoribosyltransferase compare
Psest_0063 -5.4 -6.4 tryptophan synthase, beta subunit compare
Psest_0062 -5.2 -9.4 tryptophan synthase, alpha subunit compare
Psest_3647 -5.2 -6.2 Indole-3-glycerol phosphate synthase compare
Psest_0846 -5.0 -3.9 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_0844 -5.0 -6.8 High-affinity Fe2+/Pb2+ permease compare
Psest_1492 -4.8 -8.7 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_0845 -4.3 -0.9 hypothetical protein compare
Psest_3650 -4.0 -14.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3649 -3.8 -9.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0516 -3.8 -12.6 D-alanyl-D-alanine carboxypeptidase compare
Psest_3721 -3.7 -8.2 Malic enzyme compare
Psest_4078 -3.5 -1.8 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_4219 -3.5 -2.3 DNA polymerase I compare
Psest_0843 -3.4 -13.9 hypothetical protein compare
Psest_0542 -3.3 -12.6 AMP nucleosidase compare
Psest_3458 -3.3 -3.9 hypothetical protein compare
Psest_2590 -3.3 -1.1 3-isopropylmalate dehydratase, small subunit compare
Psest_2872 -3.2 -1.6 protein RecA compare
Psest_1509 -3.2 -8.8 quinolinate synthetase complex, A subunit compare
Psest_3960 -3.2 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1293 -3.2 -1.6 VanZ like family. compare
Psest_3510 -3.1 -8.8 Na+-dependent transporters of the SNF family compare
Psest_2581 -3.1 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_1663 -3.0 -4.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3862 -2.9 -12.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0867 -2.9 -2.0 hypothetical protein compare
Psest_3367 -2.9 -1.3 translation initation factor SUI1, putative, prokaryotic compare
Psest_1103 -2.7 -3.0 GTP-binding protein YchF compare
Psest_0958 -2.7 -6.2 Oligoketide cyclase/lipid transport protein compare
Psest_3399 -2.7 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0708 -2.6 -1.6 outer membrane assembly lipoprotein YfiO compare
Psest_1012 -2.5 -5.0 Signal transduction histidine kinase compare
Psest_1999 -2.5 -1.3 pseudouridine synthase compare
Psest_2651 -2.5 -4.5 DNA topoisomerase I, bacterial compare
Psest_2718 -2.5 -1.5 hypothetical protein compare
Psest_4142 -2.5 -1.5 hypothetical protein compare
Psest_2133 -2.5 -9.1 Uncharacterized protein conserved in bacteria compare
Psest_3148 -2.4 -1.1 hypothetical protein compare
Psest_2316 -2.4 -12.3 phosphoenolpyruvate synthase compare
Psest_1540 -2.4 -1.4 biotin-dependent carboxylase uncharacterized domain compare
Psest_0744 -2.4 -0.8 Uncharacterized conserved protein compare
Psest_0969 -2.4 -1.8 transcription elongation factor GreA compare
Psest_0161 -2.4 -2.6 Membrane-bound metallopeptidase compare
Psest_2132 -2.3 -11.1 Outer membrane protein compare
Psest_0508 -2.3 -7.4 gamma-glutamyl phosphate reductase compare
Psest_0144 -2.3 -5.1 Fe-S cluster protector protein compare
Psest_0359 -2.3 -2.7 Transcriptional regulators compare
Psest_0485 -2.3 -3.2 clan AA aspartic protease, TIGR02281 family compare
Psest_1008 -2.2 -1.1 hypothetical protein compare
Psest_0558 -2.2 -0.8 urease, beta subunit compare
Psest_2945 -2.1 -1.0 septum site-determining protein MinC compare
Psest_1496 -2.1 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_3767 -2.1 -3.8 tyrosine recombinase XerC compare
Psest_2862 -2.1 -7.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_0078 -2.1 -1.0 hypothetical protein compare
Psest_0498 -2.1 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_0309 -2.0 -1.1 RND family efflux transporter, MFP subunit compare
Psest_3351 -2.0 -3.8 peptide chain release factor 3 compare
Psest_0310 -2.0 -3.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1295 -2.0 -6.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3850 -2.0 -0.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1659 -2.0 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2946 -2.0 -1.9 septum site-determining protein MinD compare
Psest_2714 -2.0 -1.8 7-cyano-7-deazaguanine reductase compare
Psest_1242 -2.0 -2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3301 -2.0 -3.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_3518 -2.0 -1.1 Transcriptional regulators compare
Psest_3766 -1.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3878 -1.9 -2.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3129 -1.8 -1.0 tyrosine recombinase XerD compare
Psest_2863 -1.8 -4.4 Transcriptional regulator compare
Psest_0697 -1.8 -1.9 ribosomal protein L9 compare
Psest_2229 -1.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3700 -1.8 -1.1 hypothetical protein compare
Psest_1215 -1.8 -2.2 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_4088 -1.8 -2.3 Transcriptional regulators compare
Psest_2975 -1.7 -2.2 tRNA_Arg_CCT compare
Psest_2285 -1.7 -3.0 ATP-dependent protease La compare
Psest_3307 -1.7 -6.1 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3304 -1.7 -4.7 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0028 -1.7 -3.7 Coproporphyrinogen III oxidase compare
Psest_4082 -1.7 -3.2 hypothetical protein compare
Psest_3317 -1.7 -2.7 Phosphotransferase System HPr (HPr) Family compare
Psest_4042 -1.7 -2.1 hypothetical protein compare
Psest_1871 -1.7 -5.6 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_2243 -1.7 -0.9 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1655 -1.7 -4.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2025 -1.7 -0.9 cold shock domain protein CspD compare
Psest_2104 -1.6 -1.1 IscR-regulated protein YhgI compare
Psest_2018 -1.6 -1.7 Uncharacterized conserved protein compare
Psest_0186 -1.6 -4.0 Protein-disulfide isomerase compare
Psest_0257 -1.6 -2.3 Predicted Zn-dependent peptidases compare
Psest_0533 -1.6 -3.8 Sel1 repeat. compare
Psest_4335 -1.6 -1.8 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_0837 -1.6 -2.5 Putative lipid carrier protein compare
Psest_3480 -1.6 -2.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1259 -1.6 -4.6 23S rRNA m2A2503 methyltransferase compare
Psest_3101 -1.6 -8.0 L-aspartate oxidase compare
Psest_0575 -1.5 -0.7 HrpA-like helicases compare
Psest_2605 -1.5 -2.0 transcriptional activator RfaH compare
Psest_2589 -1.5 -6.5 3-isopropylmalate dehydrogenase compare
Psest_2329 -1.5 -8.2 Transcriptional regulator compare
Psest_2344 -1.5 -2.4 Methyl-accepting chemotaxis protein compare
Psest_2308 -1.4 -0.9 Predicted Fe-S protein compare
Psest_4098 -1.4 -2.4 Superfamily I DNA and RNA helicases compare
Psest_4010 -1.4 -0.7 peroxiredoxin, OsmC subfamily compare
Psest_0119 -1.4 -1.7 hypothetical protein compare
Psest_3776 -1.4 -6.1 choline/carnitine/betaine transport conserved
Psest_3191 -1.4 -1.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1204 -1.4 -1.9 Transcriptional regulators compare
Psest_0113 -1.4 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1302 -1.4 -2.3 Predicted thioesterase compare
Psest_3979 -1.4 -1.8 Fructose-2,6-bisphosphatase compare
Psest_4191 -1.4 -2.6 Transcriptional regulator compare
Psest_0662 -1.4 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2954 -1.4 -3.6 hypothetical protein compare
Psest_2015 -1.4 -3.1 Type II secretory pathway, component PulD compare
Psest_0393 -1.3 -4.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0411 -1.3 -5.7 biotin synthetase compare
Psest_3732 -1.3 -4.3 polyphosphate kinase 1 compare
Psest_3720 -1.3 -9.5 penicillin-binding protein, 1A family compare
Psest_2911 -1.3 -1.5 Protein of unknown function (DUF2945). compare
Psest_0814 -1.3 -2.0 MoxR-like ATPases compare
Psest_1452 -1.3 -7.6 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3323 -1.3 -2.7 ribonuclease, Rne/Rng family compare
Psest_4201 -1.3 -1.8 general secretion pathway protein F compare
Psest_0515 -1.3 -3.5 rare lipoprotein A compare
Psest_4309 -1.3 -1.9 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_3478 -1.3 -1.3 Cytochrome B561 compare
Psest_2011 -1.3 -3.5 Predicted permease compare
Psest_2446 -1.3 -1.6 acetyl-CoA acetyltransferases compare
Psest_1292 -1.3 -4.8 monothiol glutaredoxin, Grx4 family compare
Psest_2411 -1.3 -4.2 PAS domain S-box compare
Psest_2775 -1.3 -2.7 Glycerol-3-phosphate dehydrogenase compare
Psest_1660 -1.3 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3305 -1.2 -5.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3339 -1.2 -4.2 Signal transduction histidine kinase compare
Psest_1506 -1.2 -3.1 queuosine biosynthesis protein QueC compare
Psest_3080 -1.2 -1.3 AraC-type DNA-binding domain-containing proteins compare
Psest_2407 -1.2 -2.0 nitrite reductase [NAD(P)H], small subunit compare
Psest_4345 -1.2 -4.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0489 -1.2 -1.6 phosphoserine phosphatase SerB compare
Psest_3239 -1.2 -1.6 hypothetical protein compare
Psest_0181 -1.2 -4.0 glycine cleavage system T protein compare
Psest_3092 -1.2 -1.1 ribonuclease III, bacterial compare
Psest_1752 -1.2 -0.9 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1772 -1.2 -3.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1360 -1.2 -1.9 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_3819 -1.2 -2.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3890 -1.2 -1.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3536 -1.2 -1.0 hypothetical protein compare
Psest_3535 -1.1 -2.1 hypothetical protein compare
Psest_2271 -1.1 -2.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_3860 -1.1 -1.7 Predicted permeases compare
Psest_1510 -1.1 -2.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3140 -1.1 -4.1 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Psest_2680 -1.1 -3.7 transcriptional regulator, BolA protein family compare
Psest_3578 -1.1 -6.8 Catalase compare
Psest_1695 -1.1 -2.9 Tfp pilus assembly protein PilZ compare
Psest_0066 -1.1 -1.1 Protein of unknown function (DUF3060). compare
Psest_1176 -1.1 -2.2 Urea transporter compare
Psest_0759 -1.1 -0.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_3576 -1.1 -6.9 excinuclease ABC, A subunit conserved
Psest_1491 -1.1 -1.4 Cold shock proteins compare
Psest_1881 -1.1 -2.1 Nitroreductase compare
Psest_0259 -1.1 -0.5 cell division ATP-binding protein FtsE compare
Psest_3172 -1.1 -2.4 cation diffusion facilitator family transporter compare
Psest_0311 -1.1 -2.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2845 -1.1 -4.8 [Protein-PII] uridylyltransferase compare
Psest_2594 -1.1 -2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0212 -1.1 -1.3 exodeoxyribonuclease V, gamma subunit compare
Psest_0449 -1.0 -5.2 Glutamine synthetase adenylyltransferase compare
Psest_2520 -1.0 -1.0 Predicted SAM-dependent methyltransferase compare
Psest_1520 -1.0 -1.7 hypothetical protein compare
Psest_3170 -1.0 -2.7 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1065 -1.0 -1.2 hypothetical protein compare
Psest_1270 -1.0 -2.1 hypothetical protein compare
Psest_0962 -1.0 -4.7 DNA repair protein RecN compare
Psest_1940 -1.0 -2.3 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_4242 -1.0 -3.1 type VI secretion system FHA domain protein compare
Psest_2384 -1.0 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0353 -1.0 -2.2 Methyl-accepting chemotaxis protein compare
Psest_0014 -1.0 -1.7 PilZ domain. compare
Psest_1631 -1.0 -1.2 Uncharacterized conserved small protein compare
Psest_0398 -1.0 -3.0 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1317 -1.0 -2.5 phosphonate ABC transporter, permease protein PhnE compare
Psest_4325 -1.0 -1.4 hypothetical protein compare
Psest_2712 -1.0 -2.3 Surface lipoprotein compare
Psest_2488 -1.0 -2.2 Predicted membrane protein compare
Psest_1022 -1.0 -4.8 Thiol:disulfide interchange protein compare
Psest_2578 -1.0 -5.0 O-succinylhomoserine sulfhydrylase compare
Psest_3450 -1.0 -3.0 Permeases compare
Psest_1327 -1.0 -4.2 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_3944 -1.0 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3795 -1.0 -3.9 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2613 -1.0 -0.9 hypothetical protein compare
Psest_3100 -0.9 -2.1 RNA polymerase sigma factor RpoE compare
Psest_3306 -0.9 -2.9 conserved hypothetical integral membrane protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Sodium nitrate in Pseudomonas stutzeri RCH2

For stress Sodium nitrate across organisms