Experiment set11H12 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium nitrate 200 mM

200 most detrimental genes:

  gene name fitness t score description  
Psest_3226 +2.7 3.1 Predicted membrane protein compare
Psest_2579 +2.5 10.2 amidophosphoribosyltransferase compare
Psest_3550 +2.3 4.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1994 +2.3 5.3 Amidases related to nicotinamidase compare
Psest_1782 +2.2 4.3 Predicted transcriptional regulators compare
Psest_1920 +2.1 2.2 Uncharacterized protein conserved in bacteria compare
Psest_3531 +2.1 2.2 Peptidase propeptide and YPEB domain. compare
Psest_0243 +2.1 1.7 hypothetical protein compare
Psest_0529 +2.0 9.9 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0355 +2.0 2.8 Glycine cleavage system regulatory protein compare
Psest_3136 +2.0 8.0 Putative Mg2+ and Co2+ transporter CorB compare
Psest_0872 +1.9 1.4 Helix-turn-helix. compare
Psest_3113 +1.9 2.7 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1249 +1.9 6.9 serine O-acetyltransferase compare
Psest_0191 +1.8 1.7 PAS domain S-box compare
Psest_4134 +1.8 3.0 Uncharacterized protein conserved in bacteria compare
Psest_4364 +1.8 5.2 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_3938 +1.7 3.3 Uncharacterized protein conserved in bacteria compare
Psest_3112 +1.7 5.1 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1013 +1.7 3.8 phosphoribosylamine--glycine ligase compare
Psest_3546 +1.7 1.5 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3988 +1.7 7.6 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3115 +1.7 6.7 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3230 +1.6 7.6 Uncharacterized conserved protein compare
Psest_3045 +1.6 4.1 Cold shock proteins compare
Psest_1824 +1.6 2.7 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3496 +1.6 2.6 Predicted metal-binding protein compare
Psest_0457 +1.6 2.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3247 +1.6 2.0 Uncharacterized membrane protein compare
Psest_1417 +1.5 1.4 hypothetical protein compare
Psest_3159 +1.5 6.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1000 +1.5 8.2 PAS domain S-box compare
Psest_4170 +1.5 1.8 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3202 +1.5 3.0 Flavodoxins compare
Psest_3031 +1.4 1.1 hypothetical protein compare
Psest_1879 +1.4 3.1 Trk-type K+ transport systems, membrane components compare
Psest_0857 +1.4 2.1 Membrane transporters of cations and cationic drugs compare
Psest_3727 +1.4 5.3 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0064 +1.4 3.3 Transcriptional regulator compare
Psest_1226 +1.4 3.3 hypothetical protein compare
Psest_2333 +1.4 1.3 Protein of unknown function (DUF3359). compare
Psest_2288 +1.3 3.2 trigger factor compare
Psest_3762 +1.3 3.6 iron donor protein CyaY compare
Psest_1248 +1.3 4.1 RNA methyltransferase, TrmH family, group 1 compare
Psest_3670 +1.3 7.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3400 +1.3 0.9 Copper resistance protein D. compare
Psest_3995 +1.3 2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3962 +1.3 2.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_1888 +1.3 1.4 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2756 +1.3 1.7 hypothetical protein compare
Psest_0083 +1.3 2.3 Uncharacterized conserved protein compare
Psest_0316 +1.3 1.7 Cytochrome c556 compare
Psest_0851 +1.3 6.9 Transcriptional regulators compare
Psest_1819 +1.3 9.8 Nucleoside-diphosphate-sugar epimerases compare
Psest_0795 +1.3 3.2 ABC-type multidrug transport system, ATPase component compare
Psest_1473 +1.2 3.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1456 +1.2 3.0 Protein of unknown function (DUF2892). compare
Psest_0999 +1.2 2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2670 +1.2 3.6 Uncharacterized conserved protein compare
Psest_3039 +1.2 1.5 periplasmic nitrate reductase, NapE protein compare
Psest_0722 +1.2 5.6 Predicted ATPase compare
Psest_4009 +1.2 2.2 conserverd hypothetical protein compare
Psest_0950 +1.2 2.6 hypothetical protein compare
Psest_0791 +1.2 3.1 Acyl-CoA dehydrogenases compare
Psest_1716 +1.2 3.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1049 +1.1 2.6 Uncharacterized paraquat-inducible protein A compare
Psest_1813 +1.1 5.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2752 +1.1 1.9 Uncharacterized protein conserved in bacteria compare
Psest_2940 +1.1 3.1 Predicted membrane protein compare
Psest_4151 +1.1 2.1 Flagellar hook capping protein compare
Psest_2637 +1.1 1.8 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2312 +1.1 4.7 Small-conductance mechanosensitive channel compare
Psest_2148 +1.1 2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3573 +1.1 2.7 dTDP-4-dehydrorhamnose reductase compare
Psest_1518 +1.1 2.1 tRNA_Ser_CGA compare
Psest_1185 +1.1 2.3 heavy metal response regulator compare
Psest_3117 +1.1 2.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3973 +1.1 1.4 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2976 +1.1 1.6 hypothetical protein compare
Psest_3421 +1.1 2.9 hypothetical protein compare
Psest_0466 +1.0 2.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1815 +1.0 5.6 pseudaminic acid synthase compare
Psest_1180 +1.0 3.2 hydroxypyruvate isomerase compare
Psest_0079 +1.0 2.4 hypothetical protein compare
Psest_1768 +1.0 2.5 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_0771 +1.0 5.9 Acyl-CoA hydrolase compare
Psest_1812 +1.0 4.4 pseudaminic acid CMP-transferase compare
Psest_3114 +1.0 4.3 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1643 +1.0 1.0 hypothetical protein compare
Psest_1802 +1.0 3.4 Spermidine synthase compare
Psest_1840 +1.0 8.8 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3237 +1.0 1.3 hypothetical protein compare
Psest_4075 +1.0 5.5 symporter for L-glutamate, L-glutamine, and L-proline (from data) compare
Psest_1056 +1.0 1.8 2-isopropylmalate synthase, bacterial type compare
Psest_3355 +1.0 2.2 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Psest_0919 +1.0 1.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2711 +1.0 1.4 PilZ domain. compare
Psest_4043 +1.0 1.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3177 +1.0 0.7 hypothetical protein compare
Psest_1874 +1.0 1.7 AraC-type DNA-binding domain-containing proteins compare
Psest_4145 +1.0 1.9 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2265 +1.0 1.5 Outer membrane protein compare
Psest_0044 +1.0 3.4 Nuclease-related domain. compare
Psest_3363 +0.9 2.7 hypothetical protein compare
Psest_0757 +0.9 2.0 hypothetical protein compare
Psest_0170 +0.9 3.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_0164 +0.9 0.7 Glutaredoxin, GrxC family compare
Psest_1904 +0.9 2.0 Arabinose efflux permease compare
Psest_0192 +0.9 2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2429 +0.9 2.8 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_1809 +0.9 4.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3934 +0.9 1.8 rRNA methylase, putative, group 2 compare
Psest_3828 +0.9 0.7 zinc-binding alcohol dehydrogenase family protein compare
Psest_2066 +0.9 1.1 ABC-type uncharacterized transport system, permease component compare
Psest_1001 +0.9 2.3 hypothetical protein compare
Psest_1628 +0.9 2.2 hypothetical protein compare
Psest_3490 +0.9 1.9 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2348 +0.9 2.1 urea carboxylase-associated protein 2 compare
Psest_3415 +0.9 6.1 hypothetical protein compare
Psest_2557 +0.9 1.8 Protein of unknown function (DUF2474). compare
Psest_0450 +0.9 2.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
Psest_2102 +0.9 6.4 5-methyltetrahydrofolate--homocysteine methyltransferase compare
Psest_1617 +0.9 1.9 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3803 +0.9 1.2 DNA repair protein radc compare
Psest_2098 +0.9 2.6 Predicted ATPase/kinase involved in NAD metabolism compare
Psest_3471 +0.9 2.6 Thermostable hemolysin. compare
Psest_2762 +0.9 1.9 hypothetical protein compare
Psest_0097 +0.9 0.7 phosphonates metabolism transcriptional regulator PhnF compare
Psest_2441 +0.9 3.9 hypothetical protein compare
Psest_0362 +0.9 2.6 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_3250 +0.9 1.7 Rho termination factor, N-terminal domain. compare
Psest_4222 +0.8 4.9 Predicted Rossmann fold nucleotide-binding protein compare
Psest_0409 +0.8 1.4 Putative homoserine kinase type II (protein kinase fold) compare
Psest_1474 +0.8 3.1 phosphoribosylaminoimidazole synthetase compare
Psest_0055 +0.8 2.7 hypothetical protein compare
Psest_1466 +0.8 1.6 transcriptional regulator, Spx/MgsR family compare
Psest_1424 +0.8 2.0 Lipoate-protein ligase A compare
Psest_1889 +0.8 3.7 tryptophanyl-tRNA synthetase compare
Psest_0455 +0.8 3.0 ADP-heptose:LPS heptosyltransferase compare
Psest_0277 +0.8 0.9 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3473 +0.8 2.2 hypothetical protein compare
Psest_2342 +0.8 2.5 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_1173 +0.8 1.8 hypothetical protein compare
Psest_1814 +0.8 5.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2671 +0.8 1.3 Transcriptional regulator compare
Psest_1082 +0.8 1.0 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3295 +0.8 1.7 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_1810 +0.8 5.6 UDP-N-acetylglucosamine 4,6-dehydratase compare
Psest_2003 +0.8 4.0 Cytosine deaminase and related metal-dependent hydrolases compare
Psest_2317 +0.8 3.2 Uncharacterized protein conserved in bacteria compare
Psest_3122 +0.8 2.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3213 +0.8 3.1 acetate kinase compare
Psest_1974 +0.8 1.3 integration host factor, alpha subunit compare
Psest_3390 +0.8 3.1 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_3044 +0.8 2.2 deoxycytidine triphosphate deaminase compare
Psest_1998 +0.8 1.7 Entner-Doudoroff aldolase compare
Psest_0673 +0.8 1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3314 +0.8 3.0 ribosomal subunit interface protein compare
Psest_1986 +0.8 0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_4315 +0.8 1.3 ABC-type metal ion transport system, permease component compare
Psest_0459 +0.8 4.8 Predicted carbamoyl transferase, NodU family compare
Psest_0086 +0.8 1.2 hypothetical protein compare
Psest_1823 +0.7 3.7 Nucleoside-diphosphate-sugar epimerases compare
Psest_1121 +0.7 2.5 Hypoxanthine-guanine phosphoribosyltransferase compare
Psest_1055 +0.7 4.3 Saccharopine dehydrogenase and related proteins compare
Psest_3336 +0.7 2.4 Membrane proteins related to metalloendopeptidases compare
Psest_0133 +0.7 0.8 type VI secretion protein, VC_A0107 family compare
Psest_3522 +0.7 1.6 3-hydroxybutyrate dehydrogenase compare
Psest_3292 +0.7 1.5 hypothetical protein compare
Psest_3882 +0.7 4.0 Opacity protein and related surface antigens conserved
Psest_2349 +0.7 3.2 urea carboxylase-associated protein 1 compare
Psest_1610 +0.7 2.5 hypothetical protein compare
Psest_3174 +0.7 4.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_1431 +0.7 2.2 hypothetical protein compare
Psest_1731 +0.7 1.3 flagellar biosynthetic protein FliO compare
Psest_3377 +0.7 0.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3784 +0.7 1.3 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3141 +0.7 3.6 ADP-ribose pyrophosphatase compare
Psest_0987 +0.7 1.9 Predicted periplasmic or secreted lipoprotein compare
Psest_3116 +0.7 3.4 electron transport complex, RnfABCDGE type, G subunit compare
Psest_1735 +0.7 2.8 flagellar biosynthetic protein FlhB compare
Psest_0862 +0.7 1.6 Glycosidases compare
Psest_4124 +0.7 1.4 hypothetical protein compare
Psest_3896 +0.7 1.0 arsenite-activated ATPase ArsA compare
Psest_2750 +0.7 2.3 Nucleoside-diphosphate-sugar epimerases compare
Psest_1843 +0.7 1.2 Uncharacterized Fe-S protein compare
Psest_2624 +0.7 1.3 hypothetical protein compare
Psest_2502 +0.7 1.8 Uncharacterized protein conserved in bacteria compare
Psest_2749 +0.7 1.7 Predicted transcriptional regulators compare
Psest_1230 +0.7 0.7 Uncharacterized protein conserved in bacteria compare
Psest_4256 +0.7 0.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0640 +0.7 1.9 Uncharacterized conserved protein compare
Psest_0789 +0.7 2.4 hypothetical protein compare
Psest_2436 +0.7 2.2 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) compare
Psest_0763 +0.7 2.0 Predicted membrane protein compare
Psest_1601 +0.7 1.3 Signal transduction histidine kinase compare
Psest_4273 +0.7 3.1 Lysophospholipase compare
Psest_2726 +0.7 0.8 Rhodanese-related sulfurtransferase compare
Psest_3017 +0.7 1.6 Predicted phosphohydrolases compare
Psest_1619 +0.7 2.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare


Specific Phenotypes

For 8 genes in this experiment

For stress Sodium nitrate in Pseudomonas stutzeri RCH2

For stress Sodium nitrate across organisms