Experiment set11H10 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium nitrite 2.5 mM

200 most important genes:

  gene name fitness t score description  
Psest_2584 -5.7 -5.3 Phosphoribosylanthranilate isomerase compare
Psest_0063 -5.7 -8.7 tryptophan synthase, beta subunit compare
Psest_2011 -5.3 -7.3 Predicted permease compare
Psest_2590 -5.3 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_3648 -5.3 -8.8 anthranilate phosphoribosyltransferase compare
Psest_3960 -5.2 -2.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1492 -5.2 -6.1 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3647 -5.1 -7.8 Indole-3-glycerol phosphate synthase compare
Psest_0062 -5.1 -11.0 tryptophan synthase, alpha subunit compare
Psest_0542 -4.9 -13.8 AMP nucleosidase compare
Psest_3025 -4.4 -17.7 Cytochrome bd-type quinol oxidase, subunit 1 compare
Psest_2718 -4.1 -2.1 hypothetical protein compare
Psest_4219 -4.0 -2.8 DNA polymerase I compare
Psest_4078 -4.0 -2.2 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3338 -3.7 -1.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3024 -3.6 -6.5 cytochrome d oxidase, subunit II (cydB) compare
Psest_3650 -3.4 -12.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1496 -3.2 -1.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_1012 -3.0 -5.3 Signal transduction histidine kinase compare
Psest_1656 -2.9 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3092 -2.9 -1.6 ribonuclease III, bacterial compare
Psest_3575 -2.9 -10.0 Arabinose efflux permease compare
Psest_4103 -2.7 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_3649 -2.6 -6.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0028 -2.6 -5.2 Coproporphyrinogen III oxidase compare
Psest_0958 -2.5 -7.6 Oligoketide cyclase/lipid transport protein compare
Psest_3816 -2.5 -1.5 DNA-directed RNA polymerase, omega subunit compare
Psest_1659 -2.4 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1663 -2.4 -2.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0218 -2.3 -4.4 Acyl-CoA hydrolase compare
Psest_1660 -2.3 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3351 -2.3 -4.7 peptide chain release factor 3 compare
Psest_2304 -2.2 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1491 -2.1 -3.3 Cold shock proteins compare
Psest_2711 -2.0 -2.8 PilZ domain. compare
Psest_0485 -2.0 -4.7 clan AA aspartic protease, TIGR02281 family compare
Psest_3721 -2.0 -8.7 Malic enzyme compare
Psest_2786 -2.0 -1.0 Domain of unknown function (DUF3597). compare
Psest_3850 -1.9 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2850 -1.9 -1.3 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2565 -1.9 -2.5 Transcriptional regulator compare
Psest_0744 -1.9 -0.9 Uncharacterized conserved protein compare
Psest_1622 -1.8 -3.2 hypothetical protein compare
Psest_1655 -1.8 -4.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3496 -1.8 -1.5 Predicted metal-binding protein compare
Psest_2775 -1.8 -2.9 Glycerol-3-phosphate dehydrogenase compare
Psest_1600 -1.7 -2.2 hypothetical protein compare
Psest_2308 -1.7 -1.0 Predicted Fe-S protein compare
Psest_1295 -1.7 -5.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2981 -1.7 -2.1 sodium pump decarboxylases, gamma subunit compare
Psest_0020 -1.7 -4.1 K+ transport systems, NAD-binding component compare
Psest_1920 -1.6 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_3732 -1.6 -6.3 polyphosphate kinase 1 compare
Psest_2025 -1.6 -1.0 cold shock domain protein CspD compare
Psest_1752 -1.6 -1.5 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_4088 -1.6 -3.7 Transcriptional regulators compare
Psest_2017 -1.6 -4.6 Predicted acyltransferase compare
Psest_0310 -1.5 -3.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2757 -1.5 -1.4 hypothetical protein compare
Psest_1031 -1.5 -6.4 Uncharacterized protein conserved in bacteria compare
Psest_0520 -1.5 -0.7 hypothetical protein compare
Psest_3231 -1.5 -1.7 hypothetical protein compare
Psest_2557 -1.5 -2.3 Protein of unknown function (DUF2474). compare
Psest_0181 -1.5 -5.7 glycine cleavage system T protein compare
Psest_4405 -1.5 -1.9 hypothetical protein compare
Psest_0476 -1.5 -5.5 type I secretion outer membrane protein, TolC family compare
Psest_4316 -1.5 -2.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0031 -1.4 -1.6 Uncharacterized conserved protein compare
Psest_0551 -1.4 -4.8 PEP phosphonomutase and related enzymes compare
Psest_1282 -1.4 -2.2 Amidases related to nicotinamidase compare
Psest_0969 -1.4 -1.5 transcription elongation factor GreA compare
Psest_2872 -1.4 -1.7 protein RecA compare
Psest_2023 -1.4 -2.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0359 -1.4 -1.9 Transcriptional regulators compare
Psest_3373 -1.4 -4.5 Tfp pilus assembly protein PilX compare
Psest_0498 -1.4 -1.0 ribosome small subunit-dependent GTPase A compare
Psest_3339 -1.4 -3.4 Signal transduction histidine kinase compare
Psest_1792 -1.4 -2.9 RND family efflux transporter, MFP subunit compare
Psest_1259 -1.3 -3.8 23S rRNA m2A2503 methyltransferase compare
Psest_3190 -1.3 -4.2 pyruvate kinase compare
Psest_1661 -1.3 -0.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1562 -1.3 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2764 -1.3 -1.0 hypothetical protein compare
Psest_3447 -1.3 -1.4 Uncharacterized MobA-related protein compare
Psest_3080 -1.3 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_2037 -1.3 -3.7 uroporphyrin-III C-methyltransferase compare
Psest_0842 -1.3 -1.8 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3518 -1.3 -1.0 Transcriptional regulators compare
Psest_0411 -1.3 -5.7 biotin synthetase compare
Psest_4280 -1.3 -3.3 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_3884 -1.3 -0.7 Signal transduction histidine kinase compare
Psest_1486 -1.2 -2.4 hypothetical protein compare
Psest_2046 -1.2 -2.5 hypothetical protein compare
Psest_3519 -1.2 -2.4 Uncharacterized conserved protein compare
Psest_4221 -1.2 -2.6 homoserine kinase, Neisseria type compare
Psest_2645 -1.2 -3.8 Transcriptional regulator compare
Psest_1804 -1.2 -0.8 Superfamily II DNA and RNA helicases compare
Psest_1871 -1.2 -4.9 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_2752 -1.2 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4044 -1.2 -1.8 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3565 -1.2 -0.7 hypothetical protein compare
Psest_3303 -1.2 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1905 -1.2 -1.8 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3510 -1.2 -5.2 Na+-dependent transporters of the SNF family compare
Psest_2863 -1.2 -4.2 Transcriptional regulator compare
Psest_0164 -1.2 -0.7 Glutaredoxin, GrxC family compare
Psest_3458 -1.2 -2.2 hypothetical protein compare
Psest_2150 -1.2 -1.9 DNA polymerase LigD, polymerase domain compare
Psest_1563 -1.2 -2.2 Protein of unknown function (DUF548). compare
Psest_3178 -1.2 -2.5 formyltetrahydrofolate deformylase compare
Psest_2809 -1.1 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_1879 -1.1 -2.0 Trk-type K+ transport systems, membrane components compare
Psest_2589 -1.1 -5.3 3-isopropylmalate dehydrogenase compare
Psest_1452 -1.1 -6.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_2667 -1.1 -3.0 Uncharacterized protein involved in propionate catabolism compare
Psest_1951 -1.1 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2652 -1.1 -2.4 Protein of unknown function (DUF1653). compare
Psest_2138 -1.1 -2.4 RND family efflux transporter, MFP subunit compare
Psest_3853 -1.1 -1.5 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3995 -1.1 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1029 -1.1 -2.4 Regulator of competence-specific genes compare
Psest_0298 -1.1 -3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3803 -1.1 -0.9 DNA repair protein radc compare
Psest_1339 -1.1 -4.9 ATP-dependent helicase HrpA compare
Psest_1349 -1.1 -1.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2708 -1.1 -5.1 transaldolase compare
Psest_3391 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2090 -1.1 -2.0 Protein of unknown function (DUF2970). compare
Psest_1921 -1.1 -3.0 Protein of unknown function (DUF2797). compare
Psest_1115 -1.1 -1.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_4083 -1.1 -7.0 Predicted permease compare
Psest_3185 -1.1 -1.8 MoxR-like ATPases compare
Psest_3767 -1.1 -2.5 tyrosine recombinase XerC compare
Psest_3168 -1.0 -1.4 Molybdopterin converting factor, large subunit compare
Psest_2458 -1.0 -1.3 MoxR-like ATPases compare
Psest_3304 -1.0 -2.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2680 -1.0 -3.9 transcriptional regulator, BolA protein family compare
Psest_3372 -1.0 -4.9 Tfp pilus assembly protein PilW compare
Psest_3170 -1.0 -2.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2953 -1.0 -1.4 Histone acetyltransferase compare
Psest_3926 -1.0 -5.5 GTP-binding protein TypA/BipA compare
Psest_2424 -1.0 -1.4 K+ transport systems, NAD-binding component compare
Psest_4191 -1.0 -2.0 Transcriptional regulator compare
Psest_1524 -1.0 -2.0 Sel1 repeat. compare
Psest_1790 -1.0 -3.3 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_1327 -1.0 -4.5 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_3306 -1.0 -2.9 conserved hypothetical integral membrane protein compare
Psest_3684 -1.0 -4.8 Di- and tricarboxylate transporters compare
Psest_2636 -1.0 -5.8 tryptophan synthase, beta subunit compare
Psest_3731 -1.0 -7.1 exopolyphosphatase compare
Psest_4158 -1.0 -1.4 Flagellar motor protein compare
Psest_0442 -1.0 -1.5 ATPases of the AAA+ class compare
Psest_0413 -1.0 -3.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2133 -0.9 -4.9 Uncharacterized protein conserved in bacteria compare
Psest_3419 -0.9 -3.9 Predicted transcriptional regulators compare
Psest_2637 -0.9 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0393 -0.9 -4.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0511 -0.9 -1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0119 -0.9 -1.1 hypothetical protein compare
Psest_0357 -0.9 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4274 -0.9 -1.7 hypothetical protein compare
Psest_2490 -0.9 -5.0 succinyl-CoA synthetase, alpha subunit compare
Psest_3766 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1999 -0.9 -0.7 pseudouridine synthase compare
Psest_3707 -0.9 -2.2 Transcriptional regulator compare
Psest_3050 -0.9 -1.6 tRNA_Gly_CCC compare
Psest_1484 -0.9 -4.7 Thiol-disulfide isomerase and thioredoxins compare
Psest_1026 -0.9 -1.8 Uncharacterized iron-regulated protein compare
Psest_2491 -0.9 -2.8 succinyl-CoA synthetase, beta subunit compare
Psest_0144 -0.9 -3.5 Fe-S cluster protector protein compare
Psest_2229 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3371 -0.9 -3.9 type IV pilus modification protein PilV compare
Psest_2384 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3247 -0.9 -1.1 Uncharacterized membrane protein compare
Psest_3409 -0.9 -2.4 hypothetical protein compare
Psest_0740 -0.9 -1.0 Transcriptional regulator compare
Psest_2988 -0.9 -3.6 aspartate kinase, monofunctional class compare
Psest_2628 -0.9 -1.2 Flp pilus assembly protein, protease CpaA compare
Psest_1280 -0.9 -5.6 TonB-dependent copper receptor compare
Psest_1388 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_4278 -0.8 -2.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1595 -0.8 -0.8 Copper chaperone compare
Psest_2348 -0.8 -1.9 urea carboxylase-associated protein 2 compare
Psest_1888 -0.8 -0.6 Sua5/YciO/YrdC/YwlC family protein compare
Psest_4285 -0.8 -3.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Psest_0919 -0.8 -1.1 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2605 -0.8 -1.1 transcriptional activator RfaH compare
Psest_1082 -0.8 -1.4 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0902 -0.8 -2.5 Predicted transcriptional regulators compare
Psest_3437 -0.8 -2.6 diguanylate cyclase (GGDEF) domain compare
Psest_0837 -0.8 -1.4 Putative lipid carrier protein compare
Psest_1922 -0.8 -4.1 aminopeptidase N, Escherichia coli type compare
Psest_2048 -0.8 -1.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3307 -0.8 -3.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0832 -0.8 -3.4 iron-sulfur cluster repair di-iron protein compare
Psest_1134 -0.8 -2.9 alkyl hydroperoxide reductase, F subunit compare
Psest_2285 -0.8 -2.0 ATP-dependent protease La compare
Psest_0030 -0.8 -2.1 Putative NADH-flavin reductase compare
Psest_0722 -0.8 -3.2 Predicted ATPase compare
Psest_0632 -0.8 -2.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrite in Pseudomonas stutzeri RCH2

For stress Sodium nitrite across organisms