Experiment set11H10 for Pseudomonas stutzeri RCH2

Compare to:

LB with Sodium nitrite 2.5 mM

Group: stress
Media: LB + Sodium nitrite (2.5 mM)
Culturing: psRCH2_ML7c, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Kelly on 2/24/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 822 D7,D8

Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrite in Pseudomonas stutzeri RCH2

For stress Sodium nitrite across organisms

SEED Subsystems

Subsystem #Specific
Terminal cytochrome d ubiquinol oxidases 2
Terminal cytochrome oxidases 2
Bacterial RNA-metabolizing Zn-dependent hydrolases 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
NADH to cytochrome bd oxidase electron transfer II 2 2 1
succinate to cytochrome bd oxidase electron transfer 2 2 1
NADH to cytochrome bd oxidase electron transfer I 2 2 1
pyruvate to cytochrome bd oxidase electron transfer 2 1 1