Experiment set10S455 for Pantoea sp. MT58

Compare to:

Ying_Others16 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
IAI47_05275 -5.2 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_03725 -5.1 -7.0 phosphoglycerate dehydrogenase compare
IAI47_07090 -4.8 -8.6 histidinol dehydrogenase compare
IAI47_07085 -4.8 -10.2 histidinol-phosphate transaminase compare
IAI47_07070 -4.7 -4.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_16210 -4.7 -8.5 homoserine kinase compare
IAI47_16015 -4.7 -3.3 3-isopropylmalate dehydratase small subunit compare
IAI47_16010 -4.7 -12.1 3-isopropylmalate dehydratase large subunit compare
IAI47_16205 -4.7 -5.5 threonine synthase compare
IAI47_16350 -4.6 -4.5 phosphoserine phosphatase compare
IAI47_06275 -4.6 -15.5 amidophosphoribosyltransferase compare
IAI47_13885 -4.5 -3.1 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_13900 -4.5 -11.6 asparagine synthase B compare
IAI47_16000 -4.5 -13.5 2-isopropylmalate synthase compare
IAI47_01040 -4.4 -8.0 threonine ammonia-lyase, biosynthetic compare
IAI47_18040 -4.4 -9.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_13880 -4.4 -9.8 glucosamine-6-phosphate deaminase compare
IAI47_14350 -4.4 -4.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_00880 -4.4 -10.6 cystathionine gamma-synthase compare
IAI47_04930 -4.4 -14.0 phosphoribosylformylglycinamidine synthase compare
IAI47_14355 -4.4 -8.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_18045 -4.3 -8.3 phosphoribosylamine--glycine ligase compare
IAI47_05180 -4.3 -12.2 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_01030 -4.3 -13.3 branched-chain amino acid transaminase compare
IAI47_16005 -4.3 -8.7 3-isopropylmalate dehydrogenase compare
IAI47_01050 -4.3 -10.7 ketol-acid reductoisomerase compare
IAI47_07065 -4.3 -8.2 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_01035 -4.3 -13.7 dihydroxy-acid dehydratase compare
IAI47_07060 -4.3 -10.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_07080 -4.2 -9.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_12865 -4.2 -7.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_03860 -4.2 -9.7 diaminopimelate decarboxylase compare
IAI47_13770 -4.2 -8.0 citrate synthase compare
IAI47_09180 -4.1 -13.2 anthranilate phosphoribosyltransferase compare
IAI47_09275 -4.1 -9.2 orotidine-5'-phosphate decarboxylase compare
IAI47_16215 -4.1 -16.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_09170 -4.1 -13.6 tryptophan synthase subunit beta compare
IAI47_09175 -4.1 -13.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_16120 -4.1 -11.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_09165 -4.0 -10.4 tryptophan synthase subunit alpha compare
IAI47_00915 -4.0 -14.4 argininosuccinate synthase compare
IAI47_04160 -4.0 -10.5 phosphoadenylyl-sulfate reductase compare
IAI47_09190 -4.0 -12.9 anthranilate synthase component 1 compare
IAI47_18015 -4.0 -11.4 homoserine O-succinyltransferase compare
IAI47_12705 -4.0 -13.3 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_16115 -3.9 -20.0 carbamoyl-phosphate synthase large subunit compare
IAI47_00600 -3.8 -11.2 orotate phosphoribosyltransferase compare
IAI47_00920 -3.8 -14.5 argininosuccinate lyase compare
IAI47_12215 -3.8 -13.1 dihydroorotase compare
IAI47_04190 -3.7 -8.4 adenylyl-sulfate kinase compare
IAI47_15115 -3.6 -5.6 glutamate-5-semialdehyde dehydrogenase compare
IAI47_07095 -3.6 -10.6 ATP phosphoribosyltransferase compare
IAI47_16860 -3.6 -14.0 aspartate carbamoyltransferase compare
IAI47_12645 -3.5 -4.1 porin OmpA compare
IAI47_11930 -3.5 -5.7 two-component system response regulator PhoP compare
IAI47_05035 -3.5 -2.4 nucleoside-diphosphate kinase compare
IAI47_04410 -3.4 -18.3 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_13180 -3.3 -9.6 manganese-binding transcriptional regulator MntR compare
IAI47_13760 -3.3 -2.3 succinate dehydrogenase membrane anchor subunit compare
IAI47_13750 -3.3 -2.3 succinate dehydrogenase iron-sulfur subunit compare
IAI47_07075 -3.3 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_16420 -3.3 -19.0 LacI family DNA-binding transcriptional regulator compare
IAI47_06395 -3.3 -2.2 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_17965 -3.3 -14.9 glucose-6-phosphate isomerase compare
IAI47_17035 -3.2 -3.8 ribosome maturation factor RimP compare
IAI47_15120 -3.2 -3.8 glutamate 5-kinase compare
IAI47_05440 -3.2 -11.9 cysteine synthase A compare
IAI47_06410 -3.2 -3.8 NADH-quinone oxidoreductase subunit L compare
IAI47_11935 -3.2 -16.1 two-component system sensor histidine kinase PhoQ compare
IAI47_04150 -3.1 -15.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_06055 -3.1 -5.1 tRNA-Arg compare
IAI47_15635 -3.1 -2.1 RNA polymerase-binding protein DksA compare
IAI47_13755 -3.1 -4.7 succinate dehydrogenase flavoprotein subunit compare
IAI47_04155 -3.0 -13.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_11075 -3.0 -13.9 succinylglutamate desuccinylase compare
IAI47_09185 -3.0 -7.3 glutamine amidotransferase compare
IAI47_06405 -3.0 -2.1 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_12760 -3.0 -12.8 porin OmpF compare
IAI47_06385 -3.0 -2.1 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_06390 -3.0 -2.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_17700 -3.0 -11.4 N-acetylmuramic acid 6-phosphate etherase compare
IAI47_08705 -3.0 -12.3 carboxy terminal-processing peptidase compare
IAI47_11085 -2.9 -13.1 succinylglutamate-semialdehyde dehydrogenase compare
IAI47_04175 -2.9 -13.6 uroporphyrinogen-III C-methyltransferase compare
IAI47_17695 -2.9 -16.7 PTS N-acetylmuramic acid transporter subunit IIBC compare
IAI47_05420 -2.9 -1.9 PTS glucose transporter subunit IIA compare
IAI47_05425 -2.9 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_12915 -2.8 -12.1 leucine-responsive transcriptional regulator Lrp compare
IAI47_04605 -2.8 -15.3 magnesium-translocating P-type ATPase compare
IAI47_06420 -2.8 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_04185 -2.8 -16.3 sulfate adenylyltransferase subunit CysN compare
IAI47_01820 -2.8 -7.6 two-component system response regulator OmpR compare
IAI47_00460 -2.8 -1.9 glutamate--ammonia ligase compare
IAI47_02515 -2.8 -6.6 transcriptional regulator ArgR compare
IAI47_04180 -2.8 -13.4 sulfate adenylyltransferase subunit CysD compare
IAI47_06115 -2.8 -18.2 long-chain fatty acid transporter FadL compare
IAI47_05155 -2.8 -19.0 polyphosphate kinase 1 compare
IAI47_06365 -2.8 -3.3 NADH-quinone oxidoreductase subunit B compare
IAI47_06380 -2.8 -1.9 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_06415 -2.7 -3.7 NADH-quinone oxidoreductase subunit M compare
IAI47_14945 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
IAI47_05510 -2.7 -12.7 putative DNA-binding transcriptional regulator compare
IAI47_13765 -2.7 -2.5 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_09305 -2.6 -2.5 cyclic di-GMP phosphodiesterase compare
IAI47_06135 -2.6 -4.9 phosphohistidine phosphatase SixA compare
IAI47_02520 -2.6 -14.0 malate dehydrogenase compare
IAI47_02695 -2.6 -11.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_13745 -2.5 -3.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_05070 -2.5 -1.1 outer membrane protein assembly factor BamB compare
IAI47_13685 -2.4 -2.6 Tol-Pal system protein TolB compare
IAI47_06400 -2.4 -2.7 NADH-quinone oxidoreductase subunit J compare
IAI47_16830 -2.4 -13.9 ornithine carbamoyltransferase compare
IAI47_05175 -2.4 -11.2 phosphoribosylglycinamide formyltransferase compare
IAI47_16390 -2.3 -1.5 tRNA-Leu compare
IAI47_03855 -2.3 -9.2 LysR family transcriptional regulator compare
IAI47_13690 -2.3 -1.0 cell envelope integrity protein TolA compare
IAI47_04575 -2.2 -14.4 spermidine N1-acetyltransferase conserved
IAI47_06370 -2.2 -3.9 NADH-quinone oxidoreductase subunit C/D compare
IAI47_17250 -2.2 -13.2 cell division protein ZapE compare
IAI47_09720 -2.2 -11.0 TetR/AcrR family transcriptional regulator compare
IAI47_03805 -2.2 -5.5 FAD assembly factor SdhE compare
IAI47_08440 -2.2 -3.7 crossover junction endodeoxyribonuclease RuvC compare
IAI47_12470 -2.1 -15.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_03730 -2.1 -10.1 5-formyltetrahydrofolate cyclo-ligase compare
IAI47_01000 -2.1 -14.5 HTH-type transcriptional regulator HdfR compare
IAI47_21880 -2.1 -1.3 ParA family protein compare
IAI47_00300 -2.0 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_01780 -2.0 -2.3 Fe-S biogenesis protein NfuA compare
IAI47_08450 -2.0 -3.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_00515 -2.0 -2.9 DNA-directed RNA polymerase subunit omega compare
IAI47_03150 -2.0 -12.0 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_12790 -2.0 -1.7 chromosome partition protein MukE compare
IAI47_18400 -1.9 -1.8 tyrosine recombinase XerC compare
IAI47_16870 -1.9 -6.3 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_04110 -1.9 -16.2 two-component sensor histidine kinase BarA compare
IAI47_09040 -1.8 -2.0 NAD-dependent epimerase compare
IAI47_00875 -1.8 -2.5 met regulon transcriptional regulator MetJ compare
IAI47_16085 -1.8 -2.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18830 -1.8 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_17235 -1.8 -11.2 stringent starvation protein A compare
IAI47_11830 -1.8 -8.3 muramoyltetrapeptide carboxypeptidase compare
IAI47_03820 -1.8 -3.8 site-specific tyrosine recombinase XerD compare
IAI47_06360 -1.7 -2.6 NADH-quinone oxidoreductase subunit A compare
IAI47_08085 -1.7 -6.2 helix-turn-helix domain-containing protein compare
IAI47_09240 -1.7 -1.2 HTH-type transcriptional regulator CysB compare
IAI47_17000 -1.7 -10.2 lipoprotein NlpI compare
IAI47_00465 -1.6 -5.3 ribosome-dependent GTPase TypA compare
IAI47_00290 -1.6 -4.9 F0F1 ATP synthase subunit I compare
IAI47_00780 -1.6 -2.7 6-phosphofructokinase compare
IAI47_17185 -1.6 -6.6 RNA polymerase factor sigma-54 compare
IAI47_09235 -1.6 -1.8 type I DNA topoisomerase compare
IAI47_07165 -1.5 -2.4 exodeoxyribonuclease I compare
IAI47_00735 -1.5 -2.1 protein-export chaperone SecB compare
IAI47_01005 -1.5 -9.6 DUF413 domain-containing protein compare
IAI47_11535 -1.5 -3.4 DcrB-related protein compare
IAI47_01120 -1.5 -8.0 manganese efflux pump MntP compare
IAI47_06755 -1.5 -10.4 NAD-dependent malic enzyme compare
IAI47_01825 -1.5 -8.9 two-component system sensor histidine kinase EnvZ compare
IAI47_10845 -1.5 -3.3 major outer membrane lipoprotein compare
IAI47_03550 -1.5 -9.7 membrane-bound lytic murein transglycosylase MltC compare
IAI47_13700 -1.4 -3.7 Tol-Pal system protein TolQ compare
IAI47_08445 -1.4 -1.2 Holliday junction branch migration protein RuvA compare
IAI47_01765 -1.4 -8.0 DeoR/GlpR family transcriptional regulator compare
IAI47_06355 -1.4 -7.4 transcriptional regulator LrhA compare
IAI47_10890 -1.4 -11.3 FAD-binding oxidoreductase compare
IAI47_15110 -1.4 -4.8 chromophore lyase compare
IAI47_15485 -1.4 -0.9 molecular chaperone Skp compare
IAI47_08165 -1.4 -7.6 flagella biosynthesis regulatory protein FliZ compare
IAI47_08355 -1.4 -2.5 flagellar protein FlhE compare
IAI47_17715 -1.3 -11.7 acetate--CoA ligase compare
IAI47_16795 -1.3 -6.3 leucyl aminopeptidase compare
IAI47_03595 -1.3 -5.2 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_19215 -1.3 -9.4 hypothetical protein compare
IAI47_02350 -1.3 -1.5 tRNA-Thr compare
IAI47_05090 -1.3 -3.6 hypothetical protein compare
IAI47_17900 -1.3 -1.6 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_14775 -1.3 -3.8 transcriptional regulator NrdR compare
IAI47_12945 -1.3 -9.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
IAI47_00870 -1.2 -1.2 50S ribosomal protein L31 compare
IAI47_21330 -1.2 -8.7 aldehyde dehydrogenase family protein compare
IAI47_18410 -1.2 -3.7 diaminopimelate epimerase compare
IAI47_01915 -1.2 -4.9 phosphoglycolate phosphatase compare
IAI47_05465 -1.2 -4.9 bile acid:sodium symporter compare
IAI47_15810 -1.2 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_13155 -1.2 -2.0 H-NS histone family protein compare
IAI47_10925 -1.2 -3.1 EAL domain-containing protein compare
IAI47_00885 -1.2 -9.3 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_17005 -1.2 -5.2 polyribonucleotide nucleotidyltransferase compare
IAI47_15990 -1.1 -9.6 acetolactate synthase 3 large subunit compare
IAI47_18765 -1.1 -3.9 damage-inducible protein J compare
IAI47_15980 -1.1 -7.6 catabolite repressor/activator compare
IAI47_09245 -1.1 -3.9 YmiA family putative membrane protein compare
IAI47_07360 -1.1 -3.1 hypothetical protein compare
IAI47_12085 -1.1 -5.1 phosphate acyltransferase PlsX compare
IAI47_16915 -1.1 -6.3 HTH-type transcriptional regulator GalR compare
IAI47_10905 -1.1 -8.2 phosphoenolpyruvate synthase compare
IAI47_15985 -1.1 -5.4 acetolactate synthase small subunit compare
IAI47_10470 -1.1 -3.1 electron transport complex subunit E compare
IAI47_13415 -1.1 -7.1 L,D-transpeptidase family protein compare
IAI47_03455 -1.1 -9.1 alpha,alpha-trehalase TreF compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Ying_Others16 in Pantoea sp. MT58

For carbon source Ying_Others16 across organisms