Experiment set10S455 for Pantoea sp. MT58

Compare to:

Ying_Others16 rep B; time point 2

200 most detrimental genes:

  gene name fitness t score description  
IAI47_04910 +1.9 15.4 MurR/RpiR family transcriptional regulator compare
IAI47_04235 +1.5 12.8 RNA polymerase sigma factor RpoS compare
IAI47_00910 +1.5 7.1 acetylglutamate kinase compare
IAI47_00905 +1.5 7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_16995 +1.4 3.6 protein YrbN compare
IAI47_08465 +1.3 9.5 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_12925 +1.3 5.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_17205 +1.2 1.8 PTS phosphocarrier protein NPr compare
IAI47_16095 +1.2 5.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_06450 +1.2 5.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_06455 +1.1 6.0 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_07010 +1.1 2.9 ABC transporter permease compare
IAI47_15600 +1.0 2.2 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_11375 +1.0 1.3 hypothetical protein compare
IAI47_21765 +1.0 2.0 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_09580 +1.0 3.4 FNR family transcription factor compare
IAI47_07005 +1.0 4.2 glycosyltransferase family 4 protein compare
IAI47_10835 +1.0 1.3 tRNA-Val compare
IAI47_02600 +1.0 7.6 FtsH protease activity modulator HflK compare
IAI47_09550 +1.0 5.0 hypothetical protein compare
IAI47_08460 +0.9 6.5 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_08800 +0.9 3.4 YoaH family protein compare
IAI47_03920 +0.9 7.6 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_13725 +0.9 4.7 cytochrome ubiquinol oxidase subunit I compare
IAI47_02605 +0.8 6.2 protease modulator HflC compare
IAI47_08455 +0.8 4.9 zinc ABC transporter permease subunit ZnuB compare
IAI47_01325 +0.8 7.0 glutathione-disulfide reductase compare
IAI47_00445 +0.8 6.4 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_04025 +0.8 6.9 transcriptional regulator GcvA compare
IAI47_13075 +0.8 5.1 hypothetical protein compare
IAI47_01750 +0.8 3.8 glycerol-3-phosphate dehydrogenase compare
IAI47_13720 +0.8 3.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_17630 +0.8 5.7 amidohydrolase compare
IAI47_00825 +0.7 6.5 glycerol kinase GlpK compare
IAI47_16600 +0.7 2.1 tRNA-OTHER compare
IAI47_14930 +0.7 2.3 shikimate kinase AroL compare
IAI47_19295 +0.7 1.3 hypothetical protein compare
IAI47_04775 +0.7 1.6 SIR2 family protein compare
IAI47_04705 +0.7 0.7 hypothetical protein compare
IAI47_14635 +0.7 5.7 peptidylprolyl isomerase compare
IAI47_07885 +0.7 1.1 tRNA-Asn compare
IAI47_05255 +0.7 4.1 thioredoxin-dependent thiol peroxidase compare
IAI47_10435 +0.7 3.1 transcription modulator YdgT compare
IAI47_09850 +0.7 5.4 beta-lactamase compare
IAI47_09380 +0.7 4.3 peptide ABC transporter substrate-binding protein SapA compare
IAI47_09020 +0.7 5.0 patatin-like phospholipase RssA compare
IAI47_14730 +0.7 1.2 exodeoxyribonuclease VII small subunit compare
IAI47_16320 +0.7 4.3 DNA-binding transcriptional repressor DeoR compare
IAI47_03915 +0.7 2.6 RNA pyrophosphohydrolase compare
IAI47_12930 +0.6 2.4 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_17895 +0.6 3.9 diacylglycerol kinase compare
IAI47_06500 +0.6 4.8 TolC family outer membrane protein compare
IAI47_00320 +0.6 4.9 ATPase RavA stimulator ViaA compare
IAI47_04905 +0.6 3.4 YfhL family 4Fe-4S dicluster ferredoxin compare
IAI47_06490 +0.6 5.7 Ig-like domain-containing protein compare
IAI47_21450 +0.6 0.7 general stress protein compare
IAI47_18580 +0.6 4.9 insulinase family protein compare
IAI47_03400 +0.6 3.6 deoxyribose-phosphate aldolase compare
IAI47_07630 +0.6 3.6 glyoxylate/hydroxypyruvate reductase A compare
IAI47_06840 +0.6 3.8 lipid kinase YegS compare
IAI47_03100 +0.6 4.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
IAI47_15995 +0.6 1.1 leu operon leader peptide compare
IAI47_02380 +0.6 1.6 DNA-binding transcriptional regulator Fis compare
IAI47_03575 +0.6 2.8 DUF2884 domain-containing protein compare
IAI47_06510 +0.5 4.2 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_07905 +0.5 0.6 Arc family DNA-binding protein compare
IAI47_00830 +0.5 4.3 aquaporin family protein compare
IAI47_02725 +0.5 3.3 gamma-glutamylcyclotransferase compare
IAI47_18715 +0.5 0.8 YibL family ribosome-associated protein compare
IAI47_05595 +0.5 3.4 IclR family transcriptional regulator compare
IAI47_14325 +0.5 1.3 ribosome-associated protein YbcJ compare
IAI47_08840 +0.5 2.9 ribonuclease D compare
IAI47_16415 +0.5 4.0 nucleoside hydrolase compare
IAI47_00325 +0.5 4.0 ATPase RavA compare
IAI47_08915 +0.5 4.0 potassium/proton antiporter compare
IAI47_21235 +0.5 1.1 hypothetical protein compare
IAI47_16375 +0.5 4.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
IAI47_06065 +0.5 2.0 cytochrome c biogenesis heme-transporting ATPase CcmA compare
IAI47_04925 +0.5 4.5 membrane-bound lytic murein transglycosylase MltF compare
IAI47_11130 +0.5 3.8 ABC transporter permease compare
IAI47_02900 +0.5 2.7 transcriptional regulator ExuR compare
IAI47_17550 +0.5 2.5 GNAT family N-acetyltransferase compare
IAI47_16960 +0.5 3.2 SCP2 domain-containing protein compare
IAI47_00850 +0.5 2.9 ATP-dependent protease subunit HslV compare
IAI47_11445 +0.5 2.7 ankyrin repeat domain-containing protein compare
IAI47_05950 +0.5 2.2 head-tail adaptor compare
IAI47_03195 +0.5 1.7 cell division protein FtsP compare
IAI47_14075 +0.5 1.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_12435 +0.5 1.2 hypothetical protein compare
IAI47_04165 +0.5 2.6 hypothetical protein compare
IAI47_02595 +0.5 3.4 GTPase HflX compare
IAI47_20780 +0.5 2.3 cupin domain-containing protein compare
IAI47_16245 +0.5 2.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
IAI47_15130 +0.5 3.4 sigma factor-binding protein Crl compare
IAI47_20630 +0.5 2.6 DUF2534 family protein compare
IAI47_15715 +0.5 3.9 adenosylmethionine decarboxylase compare
IAI47_12555 +0.5 2.1 hypothetical protein compare
IAI47_00505 +0.5 2.6 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_06940 +0.5 0.5 tyrosine-protein kinase Wzc compare
IAI47_00845 +0.5 2.8 HslU--HslV peptidase ATPase subunit compare
IAI47_06505 +0.5 3.7 type I secretion system permease/ATPase compare
IAI47_17875 +0.5 3.3 zinc uptake transcriptional repressor Zur compare
IAI47_01535 +0.5 2.6 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_05150 +0.4 3.2 exopolyphosphatase compare
IAI47_10725 +0.4 1.0 DUF1656 domain-containing protein compare
IAI47_10430 +0.4 0.9 hypothetical protein compare
IAI47_09210 +0.4 2.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_15895 +0.4 1.2 secA regulator SecM compare
IAI47_19035 +0.4 1.1 transcriptional regulator compare
IAI47_01180 +0.4 0.9 prolyl oligopeptidase family serine peptidase compare
IAI47_21155 +0.4 1.2 IS6 family transposase compare
IAI47_05525 +0.4 0.9 tRNA-Ala compare
IAI47_07015 +0.4 1.9 ABC transporter ATP-binding protein compare
IAI47_14985 +0.4 2.4 hypothetical protein compare
IAI47_17050 +0.4 2.3 preprotein translocase subunit SecG compare
IAI47_02320 +0.4 2.1 DUF1488 domain-containing protein compare
IAI47_17910 +0.4 1.1 chorismate lyase compare
IAI47_06230 +0.4 1.4 hypothetical protein compare
IAI47_13300 +0.4 2.0 GNAT family N-acetyltransferase compare
IAI47_03125 +0.4 3.6 glutathionylspermidine synthase family protein compare
IAI47_07275 +0.4 2.3 DUF2058 domain-containing protein compare
IAI47_13640 +0.4 1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_03745 +0.4 2.3 YecA family protein compare
IAI47_05755 +0.4 1.6 hypothetical protein compare
IAI47_07910 +0.4 3.2 DNA (cytosine-5-)-methyltransferase compare
IAI47_11630 +0.4 1.3 hypothetical protein compare
IAI47_17080 +0.4 2.2 transcription elongation factor GreA compare
IAI47_10745 +0.4 2.3 superoxide dismutase family protein compare
IAI47_18055 +0.4 2.1 DNA-binding protein HU-alpha compare
IAI47_03145 +0.4 2.4 DUF1249 family protein compare
IAI47_05395 +0.4 3.1 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_10550 +0.4 1.5 two-component-system connector protein YcgZ compare
IAI47_09460 +0.4 3.4 peptide ABC transporter substrate-binding protein compare
IAI47_00080 +0.4 3.1 hypothetical protein compare
IAI47_01335 +0.4 1.7 CPBP family intramembrane metalloprotease compare
IAI47_15710 +0.4 3.0 polyamine aminopropyltransferase compare
IAI47_13970 +0.4 3.1 amino acid ABC transporter substrate-binding protein compare
IAI47_19275 +0.4 1.9 DMT family transporter compare
IAI47_11220 +0.4 2.5 serine/threonine-protein phosphatase compare
IAI47_05630 +0.4 0.7 hypothetical protein compare
IAI47_08695 +0.4 2.5 GAF domain-containing protein compare
IAI47_09345 +0.4 2.3 LysR family transcriptional regulator compare
IAI47_13120 +0.4 2.2 glutathione ABC transporter permease GsiC compare
IAI47_17580 +0.4 2.5 hypothetical protein compare
IAI47_08285 +0.4 2.7 flagellar transcriptional regulator FlhC compare
IAI47_02010 +0.4 2.2 taurine ABC transporter permease TauC compare
IAI47_20500 +0.4 2.5 type II toxin-antitoxin system YhaV family toxin compare
IAI47_14100 +0.4 2.0 RcnB family protein compare
IAI47_04280 +0.4 1.4 alkylphosphonate utilization protein compare
IAI47_09955 +0.4 1.3 SDR family oxidoreductase compare
IAI47_05580 +0.4 0.8 membrane protein YpdK compare
IAI47_20555 +0.4 1.8 ATP-binding cassette domain-containing protein compare
IAI47_11850 +0.4 1.5 hypothetical protein compare
IAI47_10840 +0.4 1.8 pyruvate kinase PykF compare
IAI47_13050 +0.4 1.5 YbjN domain-containing protein compare
IAI47_19000 +0.4 2.0 DHCW motif cupin fold protein compare
IAI47_10500 +0.4 2.9 dipeptide/tripeptide permease DtpA compare
IAI47_09120 +0.4 1.0 hypothetical protein compare
IAI47_06915 +0.4 2.8 outer membrane assembly protein AsmA compare
IAI47_18145 +0.4 0.9 elongation factor Tu compare
IAI47_21015 +0.4 1.4 helix-turn-helix transcriptional regulator compare
IAI47_05400 +0.4 2.4 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_03610 +0.4 1.4 YqgE/AlgH family protein compare
IAI47_07980 +0.4 2.3 flagellar type III secretion system pore protein FliP compare
IAI47_11470 +0.4 1.3 IS1 family transposase compare
IAI47_01950 +0.4 2.1 aminodeoxychorismate/anthranilate synthase component II compare
IAI47_00120 +0.4 1.7 sugar kinase compare
IAI47_01365 +0.4 0.9 inorganic phosphate transporter PitA compare
IAI47_13405 +0.4 2.1 DedA family protein compare
IAI47_15460 +0.4 1.3 ribonuclease HII compare
IAI47_11215 +0.3 2.8 type VI secretion system-associated FHA domain protein TagH compare
IAI47_05385 +0.3 2.9 sulfate ABC transporter substrate-binding protein compare
IAI47_01125 +0.3 1.2 stress response protein AzuC compare
IAI47_20690 +0.3 1.2 ASCH domain-containing protein compare
IAI47_07790 +0.3 0.9 ribose 1,5-bisphosphokinase compare
IAI47_16430 +0.3 1.0 histidine phosphatase family protein compare
IAI47_05795 +0.3 1.2 hypothetical protein compare
IAI47_17165 +0.3 2.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_05665 +0.3 1.4 hypothetical protein compare
IAI47_20130 +0.3 1.8 nuclear transport factor 2 family protein compare
IAI47_16090 +0.3 2.1 Co2+/Mg2+ efflux protein ApaG compare
IAI47_11690 +0.3 2.1 type VI secretion system baseplate subunit TssK compare
IAI47_09155 +0.3 2.6 outer membrane protein OmpW compare
IAI47_20030 +0.3 1.9 ABC transporter substrate-binding protein compare
IAI47_17870 +0.3 3.0 conjugal transfer protein TraF compare
IAI47_14640 +0.3 1.9 DNA-binding protein HU-beta compare
IAI47_04095 +0.3 1.9 2-dehydro-3-deoxyglucarate aldolase compare
IAI47_02495 +0.3 1.3 hypothetical protein compare
IAI47_08200 +0.3 1.4 hypothetical protein compare
IAI47_09470 +0.3 1.7 hypothetical protein compare
IAI47_20320 +0.3 2.3 alpha/beta hydrolase compare
IAI47_20675 +0.3 2.4 sterol desaturase family protein compare
IAI47_08305 +0.3 2.1 chemotaxis protein CheW compare
IAI47_17645 +0.3 0.9 hypothetical protein compare
IAI47_03380 +0.3 2.7 molecular chaperone OsmY compare
IAI47_18420 +0.3 2.4 class I adenylate cyclase compare
IAI47_17255 +0.3 0.8 DUF1043 family protein compare
IAI47_11110 +0.3 1.9 MarR family transcriptional regulator compare
IAI47_06845 +0.3 2.7 tRNA 5-hydroxyuridine modification protein YegQ compare
IAI47_09105 +0.3 1.4 YciY family protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Ying_Others16 in Pantoea sp. MT58

For carbon source Ying_Others16 across organisms