Experiment set10S446 for Pantoea sp. MT58

Compare to:

Ying_AminoAcid20 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
IAI47_05275 -5.2 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_06275 -4.9 -11.9 amidophosphoribosyltransferase compare
IAI47_05180 -4.9 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_12705 -4.9 -7.5 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_09275 -4.7 -6.5 orotidine-5'-phosphate decarboxylase compare
IAI47_04930 -4.7 -9.5 phosphoribosylformylglycinamidine synthase compare
IAI47_12215 -4.7 -8.4 dihydroorotase compare
IAI47_00600 -4.6 -6.4 orotate phosphoribosyltransferase compare
IAI47_16115 -4.6 -13.4 carbamoyl-phosphate synthase large subunit compare
IAI47_16120 -4.6 -8.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_18045 -4.5 -7.4 phosphoribosylamine--glycine ligase compare
IAI47_14355 -4.4 -7.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_18040 -4.4 -11.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_11930 -4.3 -4.2 two-component system response regulator PhoP compare
IAI47_13180 -4.3 -7.8 manganese-binding transcriptional regulator MntR compare
IAI47_16860 -4.3 -9.2 aspartate carbamoyltransferase compare
IAI47_02750 -4.3 -6.5 class 1 fructose-bisphosphatase compare
IAI47_14350 -4.2 -5.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_08085 -4.0 -6.6 helix-turn-helix domain-containing protein compare
IAI47_13770 -4.0 -9.9 citrate synthase compare
IAI47_00875 -3.9 -2.7 met regulon transcriptional regulator MetJ compare
IAI47_17965 -3.9 -14.5 glucose-6-phosphate isomerase compare
IAI47_18830 -3.8 -2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_16420 -3.6 -18.2 LacI family DNA-binding transcriptional regulator compare
IAI47_08705 -3.6 -8.7 carboxy terminal-processing peptidase compare
IAI47_10845 -3.6 -3.4 major outer membrane lipoprotein compare
IAI47_12645 -3.5 -3.4 porin OmpA compare
IAI47_09040 -3.4 -2.3 NAD-dependent epimerase compare
IAI47_11935 -3.4 -15.6 two-component system sensor histidine kinase PhoQ compare
IAI47_01120 -3.4 -11.5 manganese efflux pump MntP compare
IAI47_06420 -3.3 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_13760 -3.3 -2.2 succinate dehydrogenase membrane anchor subunit compare
IAI47_13750 -3.3 -2.2 succinate dehydrogenase iron-sulfur subunit compare
IAI47_06395 -3.3 -2.2 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_13685 -3.2 -3.0 Tol-Pal system protein TolB compare
IAI47_06410 -3.1 -3.0 NADH-quinone oxidoreductase subunit L compare
IAI47_13755 -3.1 -3.7 succinate dehydrogenase flavoprotein subunit compare
IAI47_06405 -3.0 -2.1 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_08440 -3.0 -4.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_06385 -3.0 -2.1 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_06390 -3.0 -2.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_06365 -3.0 -2.0 NADH-quinone oxidoreductase subunit B compare
IAI47_04605 -2.9 -15.1 magnesium-translocating P-type ATPase compare
IAI47_13745 -2.9 -2.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_13765 -2.9 -2.0 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_15115 -2.9 -9.1 glutamate-5-semialdehyde dehydrogenase compare
IAI47_13155 -2.9 -3.2 H-NS histone family protein compare
IAI47_06415 -2.9 -2.8 NADH-quinone oxidoreductase subunit M compare
IAI47_00460 -2.9 -1.9 glutamate--ammonia ligase compare
IAI47_17020 -2.8 -3.8 30S ribosome-binding factor RbfA compare
IAI47_08165 -2.8 -10.9 flagella biosynthesis regulatory protein FliZ compare
IAI47_07165 -2.8 -2.6 exodeoxyribonuclease I compare
IAI47_15120 -2.7 -5.2 glutamate 5-kinase compare
IAI47_15635 -2.7 -2.5 RNA polymerase-binding protein DksA compare
IAI47_14945 -2.7 -1.8 pyrroline-5-carboxylate reductase compare
IAI47_17000 -2.7 -12.4 lipoprotein NlpI compare
IAI47_00300 -2.6 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_06055 -2.5 -5.7 tRNA-Arg compare
IAI47_13900 -2.5 -15.2 asparagine synthase B compare
IAI47_17235 -2.5 -13.9 stringent starvation protein A compare
IAI47_05070 -2.5 -1.1 outer membrane protein assembly factor BamB compare
IAI47_06380 -2.4 -2.3 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_14695 -2.4 -4.7 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_15810 -2.4 -1.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_06400 -2.4 -2.7 NADH-quinone oxidoreductase subunit J compare
IAI47_04105 -2.4 -10.7 glycerate kinase compare
IAI47_05510 -2.4 -12.5 putative DNA-binding transcriptional regulator compare
IAI47_15980 -2.4 -12.2 catabolite repressor/activator compare
IAI47_14700 -2.3 -7.3 protoheme IX farnesyltransferase compare
IAI47_00655 -2.3 -4.0 glycosyltransferase family 4 protein compare
IAI47_14685 -2.3 -10.7 cytochrome o ubiquinol oxidase subunit I compare
IAI47_17035 -2.3 -4.2 ribosome maturation factor RimP compare
IAI47_06370 -2.3 -3.5 NADH-quinone oxidoreductase subunit C/D compare
IAI47_13700 -2.3 -4.4 Tol-Pal system protein TolQ compare
IAI47_17205 -2.3 -2.1 PTS phosphocarrier protein NPr compare
IAI47_13690 -2.2 -1.0 cell envelope integrity protein TolA compare
IAI47_13695 -2.2 -1.0 colicin uptake protein TolR compare
IAI47_10925 -2.2 -3.5 EAL domain-containing protein compare
IAI47_18240 -2.2 -2.1 NAD(P)H-flavin reductase compare
IAI47_13885 -2.1 -2.7 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_02515 -2.1 -6.5 transcriptional regulator ArgR compare
IAI47_09305 -2.1 -3.0 cyclic di-GMP phosphodiesterase compare
IAI47_00735 -2.0 -2.6 protein-export chaperone SecB compare
IAI47_06475 -2.0 -5.5 transcriptional regulator RcsB compare
IAI47_03820 -2.0 -3.7 site-specific tyrosine recombinase XerD compare
IAI47_01365 -2.0 -3.4 inorganic phosphate transporter PitA compare
IAI47_00375 -2.0 -15.3 ribose operon transcriptional repressor RbsR compare
IAI47_08450 -2.0 -4.0 Holliday junction branch migration DNA helicase RuvB compare
IAI47_20110 -2.0 -11.5 Glu/Leu/Phe/Val dehydrogenase compare
IAI47_14690 -1.9 -6.6 cytochrome o ubiquinol oxidase subunit III compare
IAI47_13195 -1.9 -9.8 DNA starvation/stationary phase protection protein Dps compare
IAI47_00935 -1.9 -6.4 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_05420 -1.9 -1.7 PTS glucose transporter subunit IIA compare
IAI47_14680 -1.9 -5.8 cytochrome o ubiquinol oxidase subunit II compare
IAI47_05090 -1.9 -4.4 hypothetical protein compare
IAI47_18420 -1.9 -11.8 class I adenylate cyclase compare
IAI47_03550 -1.9 -11.5 membrane-bound lytic murein transglycosylase MltC compare
IAI47_21880 -1.9 -1.2 ParA family protein compare
IAI47_13740 -1.8 -1.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_08355 -1.8 -3.5 flagellar protein FlhE compare
IAI47_01780 -1.8 -2.3 Fe-S biogenesis protein NfuA compare
IAI47_01765 -1.8 -8.3 DeoR/GlpR family transcriptional regulator compare
IAI47_08700 -1.8 -6.8 RNA chaperone ProQ compare
IAI47_12865 -1.7 -9.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_16870 -1.7 -7.7 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_06355 -1.7 -8.7 transcriptional regulator LrhA compare
IAI47_11830 -1.7 -8.5 muramoyltetrapeptide carboxypeptidase compare
IAI47_01475 -1.7 -7.2 MurR/RpiR family transcriptional regulator compare
IAI47_08195 -1.7 -13.6 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase conserved
IAI47_18145 -1.7 -2.3 elongation factor Tu compare
IAI47_05035 -1.7 -3.3 nucleoside-diphosphate kinase compare
IAI47_04835 -1.7 -8.6 ATP-dependent RNA helicase SrmB compare
IAI47_12470 -1.6 -12.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_17005 -1.6 -6.5 polyribonucleotide nucleotidyltransferase compare
IAI47_13260 -1.6 -8.9 formimidoylglutamate deiminase conserved
IAI47_09550 -1.6 -5.1 hypothetical protein compare
IAI47_14775 -1.5 -4.6 transcriptional regulator NrdR compare
IAI47_09235 -1.5 -1.7 type I DNA topoisomerase compare
IAI47_05425 -1.5 -4.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06360 -1.5 -2.3 NADH-quinone oxidoreductase subunit A compare
IAI47_00930 -1.5 -8.4 DNA-binding transcriptional regulator OxyR compare
IAI47_04895 -1.4 -3.6 pyridoxine 5'-phosphate synthase compare
IAI47_04110 -1.4 -12.5 two-component sensor histidine kinase BarA compare
IAI47_05330 -1.4 -10.8 L-asparagine permease compare
IAI47_08965 -1.4 -9.1 asparaginase compare
IAI47_17250 -1.4 -9.7 cell division protein ZapE compare
IAI47_12060 -1.4 -4.7 beta-ketoacyl-ACP synthase II compare
IAI47_01005 -1.4 -9.3 DUF413 domain-containing protein compare
IAI47_19215 -1.3 -9.3 hypothetical protein compare
IAI47_02350 -1.3 -1.6 tRNA-Thr compare
IAI47_03805 -1.3 -4.3 FAD assembly factor SdhE compare
IAI47_02520 -1.3 -9.2 malate dehydrogenase compare
IAI47_21335 -1.3 -3.5 RepB family plasmid replication initiator protein compare
IAI47_10905 -1.3 -9.4 phosphoenolpyruvate synthase compare
IAI47_03730 -1.3 -7.2 5-formyltetrahydrofolate cyclo-ligase compare
IAI47_00465 -1.3 -4.5 ribosome-dependent GTPase TypA compare
IAI47_16350 -1.2 -7.0 phosphoserine phosphatase compare
IAI47_05175 -1.2 -7.3 phosphoribosylglycinamide formyltransferase compare
IAI47_08850 -1.2 -4.9 septum site-determining protein MinD compare
IAI47_03860 -1.2 -7.9 diaminopimelate decarboxylase compare
IAI47_06235 -1.2 -5.8 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_04950 -1.2 -6.4 nitrogen regulatory protein P-II compare
IAI47_08785 -1.1 -9.3 L-serine ammonia-lyase compare
IAI47_06270 -1.1 -5.8 colicin V production protein compare
IAI47_05155 -1.1 -9.2 polyphosphate kinase 1 compare
IAI47_15725 -1.1 -5.3 DeoR/GlpR transcriptional regulator compare
IAI47_11480 -1.1 -3.0 hypothetical protein compare
IAI47_11735 -1.1 -2.0 histidinol-phosphatase compare
IAI47_18400 -1.1 -1.6 tyrosine recombinase XerC compare
IAI47_05520 -1.1 -0.9 tRNA-Ala compare
IAI47_01000 -1.1 -8.6 HTH-type transcriptional regulator HdfR compare
IAI47_07930 -1.1 -1.4 DUF2158 domain-containing protein compare
IAI47_15485 -1.1 -0.9 molecular chaperone Skp compare
IAI47_12175 -1.1 -2.9 anti-sigma-28 factor FlgM compare
IAI47_04300 -1.0 -4.8 recombinase RecA compare
IAI47_13415 -1.0 -7.0 L,D-transpeptidase family protein compare
IAI47_00430 -1.0 -8.0 DNA polymerase I compare
IAI47_00335 -1.0 -5.9 two-component system sensor histidine kinase QseC compare
IAI47_04870 -1.0 -4.3 elongation factor 4 compare
IAI47_06755 -1.0 -7.6 NAD-dependent malic enzyme compare
IAI47_07965 -1.0 -4.3 transcriptional regulator RcsA compare
IAI47_19450 -1.0 -7.6 hypothetical protein compare
IAI47_10520 -1.0 -2.3 pyridoxamine 5'-phosphate oxidase compare
IAI47_09750 -1.0 -6.2 ROK family transcriptional regulator compare
IAI47_00755 -1.0 -6.9 envelope stress sensor histidine kinase CpxA compare
IAI47_06245 -1.0 -2.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_13840 -1.0 -2.7 replication initiation negative regulator SeqA compare
IAI47_02090 -1.0 -3.0 elongation factor Tu compare
IAI47_08445 -1.0 -1.0 Holliday junction branch migration protein RuvA compare
IAI47_16795 -1.0 -4.9 leucyl aminopeptidase compare
IAI47_03725 -0.9 -5.3 phosphoglycerate dehydrogenase compare
IAI47_13795 -0.9 -5.0 5-oxoprolinase subunit PxpA compare
IAI47_11200 -0.9 -2.8 DotU family type IV/VI secretion system protein compare
IAI47_15005 -0.9 -2.2 hypothetical protein compare
IAI47_00515 -0.9 -1.8 DNA-directed RNA polymerase subunit omega compare
IAI47_15845 -0.9 -6.1 carboxylating nicotinate-nucleotide diphosphorylase compare
IAI47_08205 -0.9 -5.9 sodium/proline symporter PutP conserved
IAI47_15110 -0.9 -3.5 chromophore lyase compare
IAI47_03680 -0.9 -6.2 transketolase compare
IAI47_03375 -0.9 -5.6 peptide chain release factor 3 compare
IAI47_17910 -0.9 -2.4 chorismate lyase compare
IAI47_20895 -0.9 -5.8 LacI family DNA-binding transcriptional regulator compare
IAI47_11705 -0.9 -6.9 aldehyde dehydrogenase compare
IAI47_09360 -0.9 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_12655 -0.9 -6.6 Lon protease family protein compare
IAI47_14325 -0.9 -1.3 ribosome-associated protein YbcJ compare
IAI47_02590 -0.9 -3.0 RNA chaperone Hfq compare
IAI47_16390 -0.8 -0.8 tRNA-Leu compare
IAI47_03905 -0.8 -5.6 TerC family protein compare
IAI47_18530 -0.8 -1.8 thioredoxin TrxA compare
IAI47_11075 -0.8 -5.8 succinylglutamate desuccinylase compare
IAI47_18540 -0.8 -4.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_18510 -0.8 -5.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_00945 -0.8 -3.5 YijD family membrane protein compare
IAI47_08880 -0.8 -5.3 fatty acid metabolism transcriptional regulator FadR compare
IAI47_11310 -0.8 -2.7 redox-regulated ATPase YchF compare
IAI47_10795 -0.8 -4.2 HTH-type transcriptional repressor PurR compare
IAI47_18495 -0.8 -4.4 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_04225 -0.8 -5.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
IAI47_12915 -0.8 -5.1 leucine-responsive transcriptional regulator Lrp compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Ying_AminoAcid20 in Pantoea sp. MT58

For carbon source Ying_AminoAcid20 across organisms