Experiment set10S443 for Pantoea sp. MT58

Compare to:

Ying_sugar7 rep B; time point 2

200 most detrimental genes:

  gene name fitness t score description  
IAI47_12925 +1.8 6.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_16995 +1.6 2.8 protein YrbN compare
IAI47_13725 +1.6 9.3 cytochrome ubiquinol oxidase subunit I compare
IAI47_09245 +1.5 6.6 YmiA family putative membrane protein compare
IAI47_12930 +1.4 6.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_05525 +1.4 2.3 tRNA-Ala compare
IAI47_15600 +1.3 2.7 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_07550 +1.2 1.8 tRNA-Asn compare
IAI47_13720 +1.2 5.6 cytochrome d ubiquinol oxidase subunit II compare
IAI47_19945 +1.1 1.1 hypothetical protein compare
IAI47_01135 +1.1 1.2 hypothetical protein compare
IAI47_09580 +1.1 3.9 FNR family transcription factor compare
IAI47_07905 +1.0 0.9 Arc family DNA-binding protein compare
IAI47_18715 +1.0 1.3 YibL family ribosome-associated protein compare
IAI47_08035 +0.9 2.4 flagellar hook-basal body complex protein FliE compare
IAI47_16405 +0.9 3.7 siderophore-iron reductase FhuF compare
IAI47_19295 +0.9 1.8 hypothetical protein compare
IAI47_11850 +0.9 3.5 hypothetical protein compare
IAI47_11760 +0.9 1.4 TonB-dependent siderophore receptor compare
IAI47_13075 +0.9 4.9 hypothetical protein compare
IAI47_16595 +0.9 2.4 DUF4102 domain-containing protein compare
IAI47_02600 +0.8 6.1 FtsH protease activity modulator HflK compare
IAI47_03610 +0.8 3.1 YqgE/AlgH family protein compare
IAI47_02605 +0.8 5.7 protease modulator HflC compare
IAI47_16320 +0.8 5.6 DNA-binding transcriptional repressor DeoR compare
IAI47_00825 +0.8 6.7 glycerol kinase GlpK compare
IAI47_11210 +0.8 5.6 type VI secretion system-associated protein TagF compare
IAI47_21655 +0.8 0.8 LacI family DNA-binding transcriptional regulator compare
IAI47_04710 +0.8 2.1 hypothetical protein compare
IAI47_09550 +0.8 3.9 hypothetical protein compare
IAI47_00445 +0.7 5.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_11375 +0.7 1.1 hypothetical protein compare
IAI47_09395 +0.7 1.9 phage shock protein PspA compare
IAI47_04800 +0.7 0.7 RnfH family protein compare
IAI47_03400 +0.7 4.4 deoxyribose-phosphate aldolase compare
IAI47_20705 +0.7 1.1 sulfur carrier protein ThiS compare
IAI47_17580 +0.7 4.3 hypothetical protein compare
IAI47_15980 +0.7 4.8 catabolite repressor/activator compare
IAI47_07025 +0.7 3.3 glycosyltransferase family 4 protein compare
IAI47_12985 +0.6 1.9 heavy metal-binding domain-containing protein compare
IAI47_09755 +0.6 3.4 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_08800 +0.6 1.5 YoaH family protein compare
IAI47_19030 +0.6 1.9 hypothetical protein compare
IAI47_10435 +0.6 2.6 transcription modulator YdgT compare
IAI47_10555 +0.6 1.9 hypothetical protein compare
IAI47_08285 +0.6 4.0 flagellar transcriptional regulator FlhC compare
IAI47_11515 +0.6 0.7 hypothetical protein compare
IAI47_15460 +0.6 2.4 ribonuclease HII compare
IAI47_04575 +0.6 4.4 spermidine N1-acetyltransferase compare
IAI47_01825 +0.6 3.9 two-component system sensor histidine kinase EnvZ compare
IAI47_18840 +0.6 2.2 membrane protein insertion efficiency factor YidD compare
IAI47_02400 +0.6 0.9 YhdT family protein compare
IAI47_01750 +0.6 2.8 glycerol-3-phosphate dehydrogenase compare
IAI47_07885 +0.6 0.7 tRNA-Asn compare
IAI47_18270 +0.6 2.1 twin-arginine translocase TatA/TatE family subunit compare
IAI47_00760 +0.6 1.8 envelope stress response regulator transcription factor CpxR compare
IAI47_05810 +0.6 1.0 hypothetical protein compare
IAI47_07970 +0.6 3.1 flagellar type III secretion system protein FliR compare
IAI47_20690 +0.6 1.8 ASCH domain-containing protein compare
IAI47_12355 +0.6 1.3 hydroxymyristoyl-ACP dehydratase compare
IAI47_13710 +0.5 1.9 cyd operon protein YbgE compare
IAI47_11130 +0.5 4.4 ABC transporter permease compare
IAI47_18215 +0.5 1.0 Trk system potassium transporter TrkH compare
IAI47_14185 +0.5 3.1 DUF1349 domain-containing protein compare
IAI47_05850 +0.5 1.8 NinF family protein compare
IAI47_09850 +0.5 4.2 beta-lactamase compare
IAI47_17550 +0.5 2.5 GNAT family N-acetyltransferase compare
IAI47_20640 +0.5 2.5 hypothetical protein compare
IAI47_07980 +0.5 2.9 flagellar type III secretion system pore protein FliP compare
IAI47_09900 +0.5 1.5 type II toxin-antitoxin system antitoxin HipB compare
IAI47_20440 +0.5 1.8 SDR family oxidoreductase compare
IAI47_04505 +0.5 3.3 transcriptional repressor MprA compare
IAI47_06840 +0.5 2.7 lipid kinase YegS compare
IAI47_05665 +0.5 1.5 hypothetical protein compare
IAI47_09360 +0.5 0.8 peptide ABC transporter ATP-binding protein SapF compare
IAI47_20310 +0.5 2.5 DoxX family protein compare
IAI47_10550 +0.5 1.7 two-component-system connector protein YcgZ compare
IAI47_08280 +0.5 3.5 flagellar transcriptional regulator FlhD compare
IAI47_09790 +0.5 1.2 DUF1161 domain-containing protein compare
IAI47_08145 +0.5 4.3 flagellin FliC compare
IAI47_09455 +0.5 1.8 murein tripeptide amidase MpaA compare
IAI47_18770 +0.5 1.1 type I addiction module toxin, SymE family compare
IAI47_11215 +0.5 3.7 type VI secretion system-associated FHA domain protein TagH compare
IAI47_09380 +0.5 2.6 peptide ABC transporter substrate-binding protein SapA compare
IAI47_14730 +0.5 0.7 exodeoxyribonuclease VII small subunit compare
IAI47_18420 +0.5 3.7 class I adenylate cyclase compare
IAI47_16430 +0.5 1.9 histidine phosphatase family protein compare
IAI47_21610 +0.5 3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_07650 +0.5 2.7 GNAT family N-acetyltransferase compare
IAI47_16685 +0.5 1.8 DUF2501 domain-containing protein compare
IAI47_14710 +0.5 1.7 YajQ family cyclic di-GMP-binding protein compare
IAI47_20470 +0.5 2.2 OmpA family protein compare
IAI47_07950 +0.5 1.9 YqaE/Pmp3 family membrane protein compare
IAI47_02850 +0.4 2.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_05745 +0.4 0.8 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_11610 +0.4 2.8 serine/threonine-protein phosphatase compare
IAI47_14635 +0.4 3.5 peptidylprolyl isomerase compare
IAI47_05325 +0.4 1.4 DUF1471 domain-containing protein compare
IAI47_01475 +0.4 2.6 MurR/RpiR family transcriptional regulator compare
IAI47_07350 +0.4 0.4 hypothetical protein compare
IAI47_20835 +0.4 2.1 Dabb family protein compare
IAI47_03215 +0.4 2.8 cystathionine beta-lyase compare
IAI47_07455 +0.4 1.7 hypothetical protein compare
IAI47_02900 +0.4 2.4 transcriptional regulator ExuR compare
IAI47_00830 +0.4 3.2 aquaporin family protein compare
IAI47_19000 +0.4 1.9 DHCW motif cupin fold protein compare
IAI47_07450 +0.4 1.1 winged helix-turn-helix domain-containing protein compare
IAI47_21690 +0.4 3.0 TetR/AcrR family transcriptional regulator compare
IAI47_06145 +0.4 2.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
IAI47_13085 +0.4 2.5 undecaprenyl-diphosphate phosphatase compare
IAI47_07630 +0.4 2.5 glyoxylate/hydroxypyruvate reductase A compare
IAI47_06425 +0.4 2.3 GNAT family N-acetyltransferase compare
IAI47_04195 +0.4 1.8 DUF3561 family protein compare
IAI47_11220 +0.4 2.6 serine/threonine-protein phosphatase compare
IAI47_06445 +0.4 1.8 2Fe-2S ferredoxin-like protein compare
IAI47_13050 +0.4 1.4 YbjN domain-containing protein compare
IAI47_05755 +0.4 1.1 hypothetical protein compare
IAI47_10365 +0.4 2.2 adenosine deaminase compare
IAI47_14170 +0.4 1.1 hypothetical protein compare
IAI47_07925 +0.4 1.4 DUF808 family protein compare
IAI47_04705 +0.4 0.4 hypothetical protein compare
IAI47_15710 +0.4 2.5 polyamine aminopropyltransferase compare
IAI47_11520 +0.4 1.2 type VI secretion system tip protein VgrG compare
IAI47_09545 +0.4 2.3 two-component system response regulator RstA compare
IAI47_08910 +0.4 1.6 DUF1480 family protein compare
IAI47_06040 +0.4 1.2 DNA polymerase V compare
IAI47_19890 +0.4 0.6 hypothetical protein compare
IAI47_13210 +0.4 2.3 glutamine ABC transporter ATP-binding protein GlnQ compare
IAI47_02320 +0.4 1.7 DUF1488 domain-containing protein compare
IAI47_16480 +0.4 2.1 YecA family protein compare
IAI47_02640 +0.4 2.0 biofilm peroxide resistance protein BsmA compare
IAI47_14910 +0.4 2.3 recombination-associated protein RdgC compare
IAI47_09105 +0.4 1.2 YciY family protein compare
IAI47_08485 +0.4 2.8 pyruvate kinase compare
IAI47_05915 +0.4 1.6 minor capsid protein compare
IAI47_21115 +0.4 1.3 arsenate reductase (glutaredoxin) compare
IAI47_12125 +0.4 2.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_17255 +0.4 0.6 DUF1043 family protein compare
IAI47_00835 +0.4 1.2 cell division protein ZapB compare
IAI47_12180 +0.4 1.9 flagellar export chaperone FlgN compare
IAI47_21680 +0.4 1.2 hypothetical protein compare
IAI47_11625 +0.4 1.1 DUF1311 domain-containing protein compare
IAI47_16340 +0.4 3.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
IAI47_15240 +0.4 1.4 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
IAI47_00320 +0.4 2.7 ATPase RavA stimulator ViaA compare
IAI47_03130 +0.4 2.4 DUF1190 family protein compare
IAI47_10500 +0.4 2.7 dipeptide/tripeptide permease DtpA compare
IAI47_08695 +0.4 1.9 GAF domain-containing protein compare
IAI47_21235 +0.4 0.6 hypothetical protein compare
IAI47_16825 +0.4 2.2 ribonuclease E inhibitor RraB compare
IAI47_20230 +0.4 2.0 peroxiredoxin compare
IAI47_21790 +0.4 1.7 helix-turn-helix domain-containing protein compare
IAI47_15425 +0.4 1.8 Rho-binding antiterminator compare
IAI47_11675 +0.4 2.1 type VI secretion system-associated protein TagF compare
IAI47_12050 +0.4 2.5 cell division protein YceG compare
IAI47_16410 +0.4 1.0 YbaK/EbsC family protein compare
IAI47_13645 +0.4 1.8 helix-turn-helix domain-containing protein compare
IAI47_10915 +0.4 2.5 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_03630 +0.4 1.3 SprT family zinc-dependent metalloprotease compare
IAI47_19690 +0.4 0.5 hypothetical protein compare
IAI47_02520 +0.4 2.8 malate dehydrogenase compare
IAI47_21715 +0.4 2.3 HAMP domain-containing protein compare
IAI47_09120 +0.4 0.8 hypothetical protein compare
IAI47_01820 +0.4 2.1 two-component system response regulator OmpR compare
IAI47_08135 +0.4 2.7 flagellar export chaperone FliS compare
IAI47_17050 +0.4 1.9 preprotein translocase subunit SecG compare
IAI47_20410 +0.4 2.7 two-component system sensor histidine kinase DcuS compare
IAI47_18580 +0.4 2.8 insulinase family protein compare
IAI47_20420 +0.3 2.0 FAD:protein FMN transferase compare
IAI47_19065 +0.3 2.2 iron/manganese ABC transporter permease subunit SitC compare
IAI47_18815 +0.3 1.9 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_15730 +0.3 2.4 D-threonate 4-phosphate dehydrogenase compare
IAI47_15295 +0.3 1.5 oxalurate catabolism protein HpxZ compare
IAI47_20130 +0.3 1.5 nuclear transport factor 2 family protein compare
IAI47_06500 +0.3 2.4 TolC family outer membrane protein compare
IAI47_10690 +0.3 1.5 hypothetical protein compare
IAI47_10330 +0.3 1.9 DNA replication terminus site-binding protein compare
IAI47_21605 +0.3 2.7 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_09585 +0.3 2.2 DNA endonuclease SmrA compare
IAI47_14200 +0.3 0.9 hypothetical protein compare
IAI47_18325 +0.3 2.7 DMT family transporter compare
IAI47_11685 +0.3 2.1 DotU family type VI secretion system protein compare
IAI47_01315 +0.3 2.1 SuhB compare
IAI47_21005 +0.3 2.0 hypothetical protein compare
IAI47_07185 +0.3 1.7 substrate-binding domain-containing protein compare
IAI47_07460 +0.3 1.4 hypothetical protein compare
IAI47_13120 +0.3 2.0 glutathione ABC transporter permease GsiC compare
IAI47_20680 +0.3 1.3 hypothetical protein compare
IAI47_19865 +0.3 1.7 ATP-binding cassette domain-containing protein compare
IAI47_16300 +0.3 2.0 urea ABC transporter ATP-binding subunit UrtE compare
IAI47_02455 +0.3 2.4 ribonuclease G compare
IAI47_07515 +0.3 1.2 hypothetical protein compare
IAI47_13540 +0.3 1.4 kinase inhibitor compare
IAI47_20430 +0.3 2.4 DASS family sodium-coupled anion symporter compare
IAI47_07050 +0.3 1.5 ABC transporter substrate-binding protein compare
IAI47_10795 +0.3 2.1 HTH-type transcriptional repressor PurR compare
IAI47_19300 +0.3 2.4 hypothetical protein compare
IAI47_20500 +0.3 1.8 type II toxin-antitoxin system YhaV family toxin compare
IAI47_07985 +0.3 1.5 flagellar biosynthetic protein FliO compare
IAI47_16240 +0.3 2.4 MDR efflux pump AcrAB transcriptional activator RobA compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ying_sugar7 in Pantoea sp. MT58

For carbon source Ying_sugar7 across organisms