Experiment set10S439 for Pantoea sp. MT58

Compare to:

Ying_all64 rep A; time point 2

200 most detrimental genes:

  gene name fitness t score description  
IAI47_12925 +1.6 5.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_13720 +1.6 7.9 cytochrome d ubiquinol oxidase subunit II compare
IAI47_13725 +1.5 8.9 cytochrome ubiquinol oxidase subunit I compare
IAI47_09245 +1.4 6.1 YmiA family putative membrane protein compare
IAI47_17560 +1.3 1.8 ROK family transcriptional regulator compare
IAI47_01750 +1.3 6.5 glycerol-3-phosphate dehydrogenase compare
IAI47_15595 +1.2 2.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_05525 +1.2 1.9 tRNA-Ala compare
IAI47_21450 +1.2 1.8 general stress protein compare
IAI47_12930 +1.1 3.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_00760 +1.1 3.6 envelope stress response regulator transcription factor CpxR compare
IAI47_00445 +1.0 8.0 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_02605 +1.0 7.0 protease modulator HflC compare
IAI47_07005 +1.0 3.1 glycosyltransferase family 4 protein compare
IAI47_10435 +1.0 4.7 transcription modulator YdgT compare
IAI47_07885 +1.0 1.2 tRNA-Asn compare
IAI47_16320 +0.9 6.0 DNA-binding transcriptional repressor DeoR compare
IAI47_02600 +0.9 7.1 FtsH protease activity modulator HflK compare
IAI47_00825 +0.9 7.5 glycerol kinase GlpK compare
IAI47_11655 +0.9 2.8 hypothetical protein compare
IAI47_07980 +0.9 5.2 flagellar type III secretion system pore protein FliP compare
IAI47_09580 +0.9 3.1 FNR family transcription factor compare
IAI47_07970 +0.9 5.2 flagellar type III secretion system protein FliR compare
IAI47_18580 +0.8 7.0 insulinase family protein compare
IAI47_03400 +0.8 4.9 deoxyribose-phosphate aldolase compare
IAI47_03195 +0.8 3.1 cell division protein FtsP compare
IAI47_00770 +0.8 0.7 general stress protein compare
IAI47_06450 +0.8 3.3 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_11210 +0.8 5.6 type VI secretion system-associated protein TagF compare
IAI47_00540 +0.8 1.5 hypothetical protein compare
IAI47_10430 +0.8 2.4 hypothetical protein compare
IAI47_14930 +0.8 1.7 shikimate kinase AroL compare
IAI47_08285 +0.8 5.4 flagellar transcriptional regulator FlhC compare
IAI47_09850 +0.8 5.9 beta-lactamase compare
IAI47_11850 +0.8 3.3 hypothetical protein compare
IAI47_13700 +0.7 3.0 Tol-Pal system protein TolQ compare
IAI47_04705 +0.7 0.6 hypothetical protein compare
IAI47_19050 +0.7 1.8 hypothetical protein compare
IAI47_12410 +0.7 3.5 MarR family transcriptional regulator compare
IAI47_15970 +0.7 1.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_15895 +0.7 1.7 secA regulator SecM compare
IAI47_10835 +0.7 0.8 tRNA-Val compare
IAI47_06455 +0.7 3.6 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_12125 +0.7 4.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_06675 +0.7 1.6 DUF1232 domain-containing protein compare
IAI47_15730 +0.7 4.5 D-threonate 4-phosphate dehydrogenase compare
IAI47_08035 +0.6 1.8 flagellar hook-basal body complex protein FliE compare
IAI47_11215 +0.6 5.0 type VI secretion system-associated FHA domain protein TagH compare
IAI47_11445 +0.6 2.7 ankyrin repeat domain-containing protein compare
IAI47_08800 +0.6 2.2 YoaH family protein compare
IAI47_01610 +0.6 2.3 glycerophosphodiester phosphodiesterase compare
IAI47_08290 +0.6 4.5 flagellar motor stator protein MotA compare
IAI47_12985 +0.6 2.4 heavy metal-binding domain-containing protein compare
IAI47_00830 +0.6 4.5 aquaporin family protein compare
IAI47_10550 +0.6 2.8 two-component-system connector protein YcgZ compare
IAI47_08295 +0.6 4.8 flagellar motor protein MotB compare
IAI47_08610 +0.6 1.9 tail fiber assembly protein compare
IAI47_02900 +0.6 2.8 transcriptional regulator ExuR compare
IAI47_05755 +0.6 1.7 hypothetical protein compare
IAI47_21235 +0.6 1.2 hypothetical protein compare
IAI47_19945 +0.6 0.6 hypothetical protein compare
IAI47_13075 +0.6 3.4 hypothetical protein compare
IAI47_12160 +0.6 3.5 flagellar basal body rod protein FlgC compare
IAI47_11220 +0.6 3.2 serine/threonine-protein phosphatase compare
IAI47_12220 +0.6 2.2 DNA damage-inducible protein I compare
IAI47_10915 +0.6 4.2 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_12155 +0.5 3.7 flagellar hook assembly protein FlgD compare
IAI47_03570 +0.5 1.6 YggL family protein compare
IAI47_04575 +0.5 4.3 spermidine N1-acetyltransferase compare
IAI47_05845 +0.5 3.0 hypothetical protein compare
IAI47_05770 +0.5 1.4 hypothetical protein compare
IAI47_20630 +0.5 2.8 DUF2534 family protein compare
IAI47_14185 +0.5 3.3 DUF1349 domain-containing protein compare
IAI47_14635 +0.5 4.2 peptidylprolyl isomerase compare
IAI47_17015 +0.5 4.0 tRNA pseudouridine(55) synthase TruB compare
IAI47_21500 +0.5 2.6 H-NS histone family protein compare
IAI47_00565 +0.5 2.0 DUF3289 family protein compare
IAI47_12130 +0.5 4.2 flagellar basal body P-ring protein FlgI compare
IAI47_17050 +0.5 2.2 preprotein translocase subunit SecG compare
IAI47_08045 +0.5 0.9 NUDIX domain-containing protein compare
IAI47_08280 +0.5 3.7 flagellar transcriptional regulator FlhD compare
IAI47_12140 +0.5 3.4 flagellar basal-body rod protein FlgG compare
IAI47_07485 +0.5 1.3 DUF4756 family protein compare
IAI47_02320 +0.5 1.8 DUF1488 domain-containing protein compare
IAI47_02260 +0.5 2.6 Zn(2+)-responsive transcriptional regulator compare
IAI47_21600 +0.5 1.2 EamA family transporter compare
IAI47_17580 +0.5 3.1 hypothetical protein compare
IAI47_07630 +0.5 3.0 glyoxylate/hydroxypyruvate reductase A compare
IAI47_02890 +0.5 2.4 EnvZ/OmpR regulon moderator MzrA compare
IAI47_07985 +0.5 3.2 flagellar biosynthetic protein FliO compare
IAI47_05850 +0.5 1.7 NinF family protein compare
IAI47_07555 +0.5 3.2 sugar ABC transporter substrate-binding protein compare
IAI47_15710 +0.5 3.5 polyamine aminopropyltransferase compare
IAI47_12135 +0.5 4.0 flagellar basal body L-ring protein FlgH compare
IAI47_08345 +0.5 3.8 flagellar type III secretion system protein FlhB compare
IAI47_12215 +0.5 3.4 dihydroorotase compare
IAI47_12150 +0.5 3.8 flagellar hook protein FlgE compare
IAI47_02750 +0.5 4.3 class 1 fructose-bisphosphatase compare
IAI47_09770 +0.5 2.3 osmoprotectant ABC transporter permease OsmW compare
IAI47_06625 +0.5 3.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_04075 +0.5 3.2 galactarate dehydratase compare
IAI47_10320 +0.5 0.8 Rrf2 family transcriptional regulator compare
IAI47_06845 +0.5 3.8 tRNA 5-hydroxyuridine modification protein YegQ compare
IAI47_18215 +0.5 0.6 Trk system potassium transporter TrkH compare
IAI47_12115 +0.5 3.5 flagellar hook-associated protein FlgL compare
IAI47_09155 +0.5 3.6 outer membrane protein OmpW compare
IAI47_10365 +0.5 2.9 adenosine deaminase compare
IAI47_15630 +0.5 2.1 DNA/RNA nuclease SfsA compare
IAI47_15880 +0.5 1.1 DNA gyrase inhibitor YacG compare
IAI47_14365 +0.5 1.6 ABC transporter ATP-binding protein compare
IAI47_17915 +0.5 2.3 phosphate-starvation-inducible protein PsiE compare
IAI47_11545 +0.5 1.7 hypothetical protein compare
IAI47_06445 +0.5 2.0 2Fe-2S ferredoxin-like protein compare
IAI47_15715 +0.5 3.7 adenosylmethionine decarboxylase compare
IAI47_14490 +0.4 1.9 primosomal replication protein compare
IAI47_08020 +0.4 2.9 flagellar assembly protein FliH compare
IAI47_02770 +0.4 1.8 cytochrome b562 compare
IAI47_09595 +0.4 3.2 aromatic acid/H+ symport family MFS transporter compare
IAI47_12170 +0.4 3.0 flagellar basal body P-ring formation protein FlgA compare
IAI47_10455 +0.4 1.4 electron transport complex subunit RsxC compare
IAI47_15675 +0.4 3.0 ABC transporter permease compare
IAI47_10565 +0.4 1.5 DUF4113 domain-containing protein compare
IAI47_18620 +0.4 2.8 cellulose synthase operon protein YhjQ compare
IAI47_16430 +0.4 1.4 histidine phosphatase family protein compare
IAI47_12165 +0.4 2.5 flagellar basal body rod protein FlgB compare
IAI47_12775 +0.4 3.1 YcbK family protein compare
IAI47_19225 +0.4 2.0 PTS sugar transporter subunit IIB compare
IAI47_08445 +0.4 0.5 Holliday junction branch migration protein RuvA compare
IAI47_13475 +0.4 1.5 molybdopterin synthase catalytic subunit MoaE compare
IAI47_17630 +0.4 3.3 amidohydrolase compare
IAI47_21505 +0.4 2.1 DUF2256 domain-containing protein compare
IAI47_20995 +0.4 1.2 hypothetical protein compare
IAI47_19390 +0.4 2.3 xanthine dehydrogenase family protein subunit M compare
IAI47_13050 +0.4 1.7 YbjN domain-containing protein compare
IAI47_08675 +0.4 1.7 metallophosphoesterase compare
IAI47_01335 +0.4 2.2 CPBP family intramembrane metalloprotease compare
IAI47_21645 +0.4 2.7 tetratricopeptide repeat protein compare
IAI47_11610 +0.4 2.8 serine/threonine-protein phosphatase compare
IAI47_03130 +0.4 2.6 DUF1190 family protein compare
IAI47_09455 +0.4 1.9 murein tripeptide amidase MpaA compare
IAI47_16375 +0.4 3.2 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
IAI47_01820 +0.4 2.5 two-component system response regulator OmpR compare
IAI47_20200 +0.4 2.6 2OG-Fe(II) oxygenase compare
IAI47_05145 +0.4 2.5 tellurite resistance methyltransferase TehB compare
IAI47_07030 +0.4 2.0 HAD family hydrolase compare
IAI47_10275 +0.4 3.0 hypothetical protein compare
IAI47_13310 +0.4 2.0 MerR family transcriptional regulator compare
IAI47_07300 +0.4 1.9 hypothetical protein compare
IAI47_08590 +0.4 1.2 hypothetical protein compare
IAI47_07995 +0.4 3.0 flagellar motor switch protein FliM compare
IAI47_20155 +0.4 1.7 molybdate ABC transporter substrate-binding protein compare
IAI47_00320 +0.4 3.0 ATPase RavA stimulator ViaA compare
IAI47_05705 +0.4 1.9 DNA polymerase III subunit theta compare
IAI47_14380 +0.4 2.3 co-chaperone YbbN compare
IAI47_12370 +0.4 1.0 acyl carrier protein compare
IAI47_03610 +0.4 1.6 YqgE/AlgH family protein compare
IAI47_07975 +0.4 1.5 flagellar biosynthesis protein FliQ compare
IAI47_05840 +0.4 2.4 recombination protein NinB compare
IAI47_20785 +0.4 2.3 GNAT family N-acetyltransferase compare
IAI47_00840 +0.4 1.8 ribonuclease E activity regulator RraA compare
IAI47_13520 +0.4 1.9 malonyl-ACP O-methyltransferase BioC compare
IAI47_08145 +0.4 3.4 flagellin FliC compare
IAI47_08000 +0.4 2.6 flagellar basal body-associated protein FliL compare
IAI47_10505 +0.4 2.3 glutathione transferase GstA compare
IAI47_07570 +0.4 2.4 nitrogen assimilation transcriptional regulator NAC compare
IAI47_21680 +0.4 1.2 hypothetical protein compare
IAI47_08015 +0.4 2.6 flagellum-specific ATP synthase FliI compare
IAI47_00185 +0.4 2.5 xylose ABC transporter ATP-binding protein compare
IAI47_16340 +0.4 3.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
IAI47_04905 +0.4 2.2 YfhL family 4Fe-4S dicluster ferredoxin compare
IAI47_08880 +0.4 2.3 fatty acid metabolism transcriptional regulator FadR compare
IAI47_16405 +0.4 1.3 siderophore-iron reductase FhuF compare
IAI47_19725 +0.4 1.6 chemotaxis protein compare
IAI47_11025 +0.4 2.4 metal-dependent hydrolase compare
IAI47_17870 +0.4 3.1 conjugal transfer protein TraF compare
IAI47_15600 +0.4 0.7 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_01940 +0.4 0.8 DUF2559 family protein compare
IAI47_09550 +0.4 1.5 hypothetical protein compare
IAI47_14990 +0.4 1.9 hypothetical protein compare
IAI47_02005 +0.4 2.1 taurine ABC transporter ATP-binding subunit compare
IAI47_10500 +0.4 2.6 dipeptide/tripeptide permease DtpA compare
IAI47_02595 +0.4 2.7 GTPase HflX compare
IAI47_15050 +0.4 2.0 hypothetical protein compare
IAI47_03945 +0.4 1.7 DUF2509 family protein compare
IAI47_14555 +0.4 1.2 hemolysin expression modulator Hha compare
IAI47_20770 +0.3 1.8 RraA family protein compare
IAI47_09885 +0.3 2.2 ABC transporter ATP-binding protein compare
IAI47_08350 +0.3 2.5 flagellar biosynthesis protein FlhA compare
IAI47_08030 +0.3 2.6 flagellar M-ring protein FliF compare
IAI47_12955 +0.3 2.0 cold shock-like protein CspD compare
IAI47_20585 +0.3 2.0 dihydroxyacetone kinase subunit DhaK compare
IAI47_16190 +0.3 1.6 molybdopterin adenylyltransferase compare
IAI47_16095 +0.3 1.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_01875 +0.3 0.9 hypothetical protein compare
IAI47_10015 +0.3 2.2 TIM barrel protein compare
IAI47_14910 +0.3 1.7 recombination-associated protein RdgC compare
IAI47_16815 +0.3 1.8 GNAT family N-acetyltransferase compare
IAI47_08485 +0.3 2.4 pyruvate kinase compare
IAI47_08340 +0.3 1.6 protein phosphatase CheZ compare
IAI47_09195 +0.3 1.7 PHP domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ying_all64 in Pantoea sp. MT58

For carbon source Ying_all64 across organisms