Experiment set10S436 for Pantoea sp. MT58

Compare to:

Ying_Others16 rep A; time point 1

200 most important genes:

  gene name fitness t score description  
IAI47_03725 -3.5 -12.9 phosphoglycerate dehydrogenase compare
IAI47_07080 -3.4 -11.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_01035 -3.3 -18.3 dihydroxy-acid dehydratase compare
IAI47_15635 -3.1 -2.1 RNA polymerase-binding protein DksA compare
IAI47_01030 -3.1 -15.4 branched-chain amino acid transaminase compare
IAI47_07090 -3.1 -13.0 histidinol dehydrogenase compare
IAI47_16205 -3.1 -10.1 threonine synthase compare
IAI47_18040 -3.0 -17.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_06360 -3.0 -3.5 NADH-quinone oxidoreductase subunit A compare
IAI47_07085 -3.0 -15.8 histidinol-phosphate transaminase compare
IAI47_13900 -3.0 -16.8 asparagine synthase B compare
IAI47_06390 -3.0 -2.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_16215 -3.0 -18.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_05180 -2.9 -15.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_13880 -2.9 -15.1 glucosamine-6-phosphate deaminase compare
IAI47_13765 -2.9 -2.0 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_16015 -2.9 -7.3 3-isopropylmalate dehydratase small subunit compare
IAI47_07065 -2.9 -12.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_05420 -2.9 -1.9 PTS glucose transporter subunit IIA compare
IAI47_16210 -2.9 -13.9 homoserine kinase compare
IAI47_16010 -2.9 -16.2 3-isopropylmalate dehydratase large subunit compare
IAI47_00460 -2.9 -1.9 glutamate--ammonia ligase compare
IAI47_09165 -2.9 -12.0 tryptophan synthase subunit alpha compare
IAI47_16350 -2.8 -11.5 phosphoserine phosphatase compare
IAI47_01040 -2.8 -12.3 threonine ammonia-lyase, biosynthetic compare
IAI47_06420 -2.8 -3.3 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_05035 -2.8 -3.7 nucleoside-diphosphate kinase compare
IAI47_00880 -2.8 -15.4 cystathionine gamma-synthase compare
IAI47_01050 -2.8 -16.7 ketol-acid reductoisomerase compare
IAI47_16000 -2.8 -17.8 2-isopropylmalate synthase compare
IAI47_06385 -2.8 -3.8 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_18045 -2.8 -12.1 phosphoribosylamine--glycine ligase compare
IAI47_13770 -2.8 -13.3 citrate synthase compare
IAI47_13755 -2.8 -7.0 succinate dehydrogenase flavoprotein subunit compare
IAI47_18015 -2.7 -15.1 homoserine O-succinyltransferase compare
IAI47_06410 -2.7 -5.7 NADH-quinone oxidoreductase subunit L compare
IAI47_07095 -2.7 -11.8 ATP phosphoribosyltransferase compare
IAI47_07070 -2.7 -8.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_14355 -2.7 -12.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_04930 -2.7 -18.6 phosphoribosylformylglycinamidine synthase compare
IAI47_14350 -2.7 -8.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_16005 -2.7 -12.1 3-isopropylmalate dehydrogenase compare
IAI47_06275 -2.6 -17.9 amidophosphoribosyltransferase compare
IAI47_03860 -2.6 -13.0 diaminopimelate decarboxylase compare
IAI47_12865 -2.6 -11.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_13750 -2.5 -3.8 succinate dehydrogenase iron-sulfur subunit compare
IAI47_07060 -2.5 -11.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_15115 -2.5 -9.6 glutamate-5-semialdehyde dehydrogenase compare
IAI47_00920 -2.5 -15.3 argininosuccinate lyase compare
IAI47_05070 -2.5 -1.1 outer membrane protein assembly factor BamB compare
IAI47_16860 -2.5 -14.3 aspartate carbamoyltransferase compare
IAI47_09190 -2.5 -13.6 anthranilate synthase component 1 compare
IAI47_09180 -2.5 -13.7 anthranilate phosphoribosyltransferase compare
IAI47_02515 -2.4 -6.9 transcriptional regulator ArgR compare
IAI47_06055 -2.4 -5.4 tRNA-Arg compare
IAI47_05275 -2.4 -6.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_06380 -2.4 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_06365 -2.4 -4.7 NADH-quinone oxidoreductase subunit B compare
IAI47_18830 -2.4 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_15120 -2.4 -6.6 glutamate 5-kinase compare
IAI47_16420 -2.4 -13.3 LacI family DNA-binding transcriptional regulator compare
IAI47_12705 -2.4 -12.5 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_16115 -2.4 -17.7 carbamoyl-phosphate synthase large subunit compare
IAI47_09170 -2.3 -14.2 tryptophan synthase subunit beta compare
IAI47_06415 -2.3 -4.0 NADH-quinone oxidoreductase subunit M compare
IAI47_09175 -2.3 -12.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00600 -2.3 -10.5 orotate phosphoribosyltransferase compare
IAI47_13760 -2.2 -3.3 succinate dehydrogenase membrane anchor subunit compare
IAI47_12215 -2.2 -11.9 dihydroorotase compare
IAI47_16120 -2.2 -10.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_06400 -2.2 -2.8 NADH-quinone oxidoreductase subunit J compare
IAI47_09275 -2.1 -9.8 orotidine-5'-phosphate decarboxylase compare
IAI47_00915 -2.0 -12.7 argininosuccinate synthase compare
IAI47_04410 -2.0 -12.7 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_14945 -1.9 -3.1 pyrroline-5-carboxylate reductase compare
IAI47_05440 -1.9 -9.6 cysteine synthase A compare
IAI47_04150 -1.9 -11.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_12915 -1.9 -9.3 leucine-responsive transcriptional regulator Lrp compare
IAI47_17700 -1.8 -9.0 N-acetylmuramic acid 6-phosphate etherase compare
IAI47_17695 -1.8 -12.8 PTS N-acetylmuramic acid transporter subunit IIBC compare
IAI47_09185 -1.8 -6.1 glutamine amidotransferase compare
IAI47_05175 -1.8 -9.5 phosphoribosylglycinamide formyltransferase compare
IAI47_17965 -1.8 -11.1 glucose-6-phosphate isomerase compare
IAI47_18215 -1.8 -2.2 Trk system potassium transporter TrkH compare
IAI47_05155 -1.7 -13.4 polyphosphate kinase 1 compare
IAI47_12760 -1.7 -11.1 porin OmpF compare
IAI47_04180 -1.7 -8.7 sulfate adenylyltransferase subunit CysD compare
IAI47_08705 -1.7 -9.9 carboxy terminal-processing peptidase compare
IAI47_04155 -1.7 -10.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_11085 -1.7 -10.2 succinylglutamate-semialdehyde dehydrogenase compare
IAI47_09240 -1.7 -1.1 HTH-type transcriptional regulator CysB compare
IAI47_07075 -1.7 -7.8 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_05510 -1.6 -9.0 putative DNA-binding transcriptional regulator compare
IAI47_04190 -1.6 -6.3 adenylyl-sulfate kinase compare
IAI47_04160 -1.6 -9.6 phosphoadenylyl-sulfate reductase compare
IAI47_00780 -1.6 -2.7 6-phosphofructokinase compare
IAI47_02400 -1.6 -2.0 YhdT family protein compare
IAI47_05425 -1.6 -4.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_11935 -1.6 -10.7 two-component system sensor histidine kinase PhoQ compare
IAI47_06405 -1.6 -3.2 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_11075 -1.5 -8.8 succinylglutamate desuccinylase compare
IAI47_06370 -1.5 -4.1 NADH-quinone oxidoreductase subunit C/D compare
IAI47_11930 -1.5 -4.9 two-component system response regulator PhoP compare
IAI47_16830 -1.5 -10.3 ornithine carbamoyltransferase compare
IAI47_04175 -1.5 -7.9 uroporphyrinogen-III C-methyltransferase compare
IAI47_19690 -1.5 -1.3 hypothetical protein compare
IAI47_04185 -1.5 -10.5 sulfate adenylyltransferase subunit CysN compare
IAI47_17000 -1.5 -9.3 lipoprotein NlpI compare
IAI47_04605 -1.4 -9.3 magnesium-translocating P-type ATPase compare
IAI47_03855 -1.4 -7.1 LysR family transcriptional regulator compare
IAI47_09040 -1.4 -1.7 NAD-dependent epimerase compare
IAI47_02695 -1.4 -8.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_01820 -1.4 -6.5 two-component system response regulator OmpR compare
IAI47_02520 -1.4 -8.7 malate dehydrogenase compare
IAI47_12645 -1.4 -3.5 porin OmpA compare
IAI47_00870 -1.3 -1.3 50S ribosomal protein L31 compare
IAI47_00300 -1.3 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_04110 -1.3 -11.2 two-component sensor histidine kinase BarA compare
IAI47_12790 -1.3 -1.4 chromosome partition protein MukE compare
IAI47_09305 -1.3 -2.9 cyclic di-GMP phosphodiesterase compare
IAI47_07165 -1.3 -1.8 exodeoxyribonuclease I compare
IAI47_12470 -1.3 -8.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_06135 -1.3 -3.1 phosphohistidine phosphatase SixA compare
IAI47_17250 -1.3 -8.9 cell division protein ZapE compare
IAI47_06355 -1.2 -6.9 transcriptional regulator LrhA compare
IAI47_16390 -1.2 -1.0 tRNA-Leu compare
IAI47_00945 -1.2 -4.5 YijD family membrane protein compare
IAI47_17235 -1.2 -7.8 stringent starvation protein A compare
IAI47_00375 -1.2 -10.0 ribose operon transcriptional repressor RbsR compare
IAI47_15810 -1.2 -2.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_15005 -1.2 -1.6 hypothetical protein compare
IAI47_13155 -1.2 -2.6 H-NS histone family protein compare
IAI47_01000 -1.1 -8.6 HTH-type transcriptional regulator HdfR compare
IAI47_16870 -1.1 -5.4 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_13180 -1.1 -4.7 manganese-binding transcriptional regulator MntR compare
IAI47_06395 -1.1 -1.7 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_11830 -1.1 -5.7 muramoyltetrapeptide carboxypeptidase compare
IAI47_11415 -1.1 -1.6 hypothetical protein compare
IAI47_03805 -1.1 -3.7 FAD assembly factor SdhE compare
IAI47_03150 -1.1 -6.5 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_08445 -1.0 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_05765 -1.0 -2.6 hypothetical protein compare
IAI47_06115 -1.0 -7.8 long-chain fatty acid transporter FadL compare
IAI47_05195 -1.0 -1.8 DnaA inactivator Hda compare
IAI47_11200 -1.0 -2.9 DotU family type IV/VI secretion system protein compare
IAI47_00465 -1.0 -3.8 ribosome-dependent GTPase TypA compare
IAI47_07480 -0.9 -2.5 hypothetical protein compare
IAI47_14695 -0.9 -3.3 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_16795 -0.9 -4.7 leucyl aminopeptidase compare
IAI47_00735 -0.9 -1.3 protein-export chaperone SecB compare
IAI47_01825 -0.9 -5.8 two-component system sensor histidine kinase EnvZ compare
IAI47_10755 -0.9 -1.9 DUF1289 domain-containing protein compare
IAI47_17215 -0.9 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_09720 -0.9 -5.3 TetR/AcrR family transcriptional regulator compare
IAI47_13745 -0.9 -2.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_01005 -0.8 -5.9 DUF413 domain-containing protein compare
IAI47_15985 -0.8 -4.3 acetolactate synthase small subunit compare
IAI47_03905 -0.8 -5.4 TerC family protein compare
IAI47_10470 -0.8 -1.8 electron transport complex subunit E compare
IAI47_19215 -0.8 -5.8 hypothetical protein compare
IAI47_12920 -0.8 -2.7 thioredoxin-disulfide reductase compare
IAI47_06980 -0.8 -2.0 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_00885 -0.8 -6.6 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_07930 -0.8 -1.4 DUF2158 domain-containing protein compare
IAI47_00875 -0.8 -1.4 met regulon transcriptional regulator MetJ compare
IAI47_10890 -0.8 -6.7 FAD-binding oxidoreductase compare
IAI47_18530 -0.8 -1.7 thioredoxin TrxA compare
IAI47_13885 -0.8 -0.7 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_06240 -0.8 -4.0 aspartate-semialdehyde dehydrogenase compare
IAI47_04575 -0.8 -5.8 spermidine N1-acetyltransferase conserved
IAI47_11480 -0.8 -1.9 hypothetical protein compare
IAI47_06245 -0.8 -2.2 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_02350 -0.8 -1.0 tRNA-Thr compare
IAI47_08730 -0.8 -2.9 YebO family protein compare
IAI47_04750 -0.8 -1.3 hypothetical protein compare
IAI47_08165 -0.8 -4.5 flagella biosynthesis regulatory protein FliZ compare
IAI47_08035 -0.8 -1.3 flagellar hook-basal body complex protein FliE compare
IAI47_18315 -0.8 -4.0 HTH-type transcriptional regulator MetR compare
IAI47_03820 -0.8 -2.2 site-specific tyrosine recombinase XerD compare
IAI47_10320 -0.7 -1.0 Rrf2 family transcriptional regulator compare
IAI47_00515 -0.7 -1.2 DNA-directed RNA polymerase subunit omega compare
IAI47_09675 -0.7 -1.6 YoaK family small membrane protein compare
IAI47_14200 -0.7 -2.1 hypothetical protein compare
IAI47_02590 -0.7 -2.7 RNA chaperone Hfq compare
IAI47_03455 -0.7 -6.1 alpha,alpha-trehalase TreF compare
IAI47_05465 -0.7 -3.1 bile acid:sodium symporter compare
IAI47_08355 -0.7 -2.2 flagellar protein FlhE compare
IAI47_12055 -0.7 -4.8 aminodeoxychorismate lyase compare
IAI47_11515 -0.7 -1.0 hypothetical protein compare
IAI47_08440 -0.7 -1.1 crossover junction endodeoxyribonuclease RuvC compare
IAI47_04225 -0.7 -5.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
IAI47_01120 -0.7 -3.9 manganese efflux pump MntP compare
IAI47_09750 -0.7 -3.8 ROK family transcriptional regulator compare
IAI47_13950 -0.7 -1.0 PhoH family protein compare
IAI47_10145 -0.7 -2.7 winged helix-turn-helix transcriptional regulator compare
IAI47_17035 -0.7 -1.8 ribosome maturation factor RimP compare
IAI47_10925 -0.7 -2.0 EAL domain-containing protein compare
IAI47_08610 -0.7 -2.5 tail fiber assembly protein compare
IAI47_13270 -0.7 -4.1 histidine utilization repressor compare
IAI47_04335 -0.7 -1.8 tRNA-Arg compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Ying_Others16 in Pantoea sp. MT58

For carbon source Ying_Others16 across organisms