Experiment set10S436 for Pantoea sp. MT58

Compare to:

Ying_Others16 rep A; time point 1

200 most detrimental genes:

  gene name fitness t score description  
IAI47_13695 +1.7 1.6 colicin uptake protein TolR compare
IAI47_21450 +1.6 3.0 general stress protein compare
IAI47_17205 +1.5 3.3 PTS phosphocarrier protein NPr compare
IAI47_04910 +1.5 12.4 MurR/RpiR family transcriptional regulator compare
IAI47_04800 +1.5 1.9 RnfH family protein compare
IAI47_11760 +1.3 2.2 TonB-dependent siderophore receptor compare
IAI47_08045 +1.2 2.7 NUDIX domain-containing protein compare
IAI47_20600 +1.2 2.2 hypothetical protein compare
IAI47_12925 +1.1 4.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_00770 +1.1 1.1 general stress protein compare
IAI47_09550 +1.1 5.1 hypothetical protein compare
IAI47_15600 +1.0 2.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_08465 +1.0 7.5 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_08460 +1.0 7.5 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_16320 +1.0 7.0 DNA-binding transcriptional repressor DeoR compare
IAI47_06455 +1.0 5.3 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_07015 +1.0 5.3 ABC transporter ATP-binding protein compare
IAI47_16995 +0.9 2.5 protein YrbN compare
IAI47_06450 +0.9 3.7 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_07790 +0.9 2.4 ribose 1,5-bisphosphokinase compare
IAI47_13720 +0.9 4.1 cytochrome d ubiquinol oxidase subunit II compare
IAI47_09580 +0.9 3.7 FNR family transcription factor compare
IAI47_19890 +0.9 2.4 hypothetical protein compare
IAI47_18715 +0.9 1.8 YibL family ribosome-associated protein compare
IAI47_02600 +0.9 6.6 FtsH protease activity modulator HflK compare
IAI47_17910 +0.9 2.6 chorismate lyase compare
IAI47_08285 +0.9 5.8 flagellar transcriptional regulator FlhC compare
IAI47_14930 +0.8 2.3 shikimate kinase AroL compare
IAI47_01135 +0.8 1.0 hypothetical protein compare
IAI47_02380 +0.8 2.5 DNA-binding transcriptional regulator Fis compare
IAI47_07905 +0.8 0.9 Arc family DNA-binding protein compare
IAI47_13725 +0.8 4.0 cytochrome ubiquinol oxidase subunit I compare
IAI47_00825 +0.8 6.8 glycerol kinase GlpK compare
IAI47_13075 +0.8 4.4 hypothetical protein compare
IAI47_08455 +0.8 5.5 zinc ABC transporter permease subunit ZnuB compare
IAI47_07010 +0.8 2.0 ABC transporter permease compare
IAI47_16405 +0.8 2.9 siderophore-iron reductase FhuF compare
IAI47_05745 +0.8 1.8 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_21035 +0.7 1.9 TetR/AcrR family transcriptional regulator compare
IAI47_02605 +0.7 5.7 protease modulator HflC compare
IAI47_06500 +0.7 5.3 TolC family outer membrane protein compare
IAI47_18055 +0.7 3.3 DNA-binding protein HU-alpha compare
IAI47_19295 +0.7 2.5 hypothetical protein compare
IAI47_01750 +0.7 3.5 glycerol-3-phosphate dehydrogenase compare
IAI47_06940 +0.7 0.8 tyrosine-protein kinase Wzc compare
IAI47_03400 +0.7 4.0 deoxyribose-phosphate aldolase compare
IAI47_05630 +0.7 2.1 hypothetical protein compare
IAI47_09850 +0.7 5.4 beta-lactamase compare
IAI47_21115 +0.6 2.2 arsenate reductase (glutaredoxin) compare
IAI47_18580 +0.6 5.2 insulinase family protein compare
IAI47_06510 +0.6 4.9 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_17080 +0.6 3.4 transcription elongation factor GreA compare
IAI47_13050 +0.6 2.8 YbjN domain-containing protein compare
IAI47_00910 +0.6 3.9 acetylglutamate kinase compare
IAI47_16095 +0.6 2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_13890 +0.6 4.2 ROK family transcriptional regulator compare
IAI47_21235 +0.6 1.3 hypothetical protein compare
IAI47_10825 +0.6 1.1 tRNA-Val compare
IAI47_16430 +0.6 2.2 histidine phosphatase family protein compare
IAI47_17895 +0.6 3.9 diacylglycerol kinase compare
IAI47_06655 +0.6 1.8 1-phosphofructokinase compare
IAI47_06565 +0.6 0.6 YejL family protein compare
IAI47_02900 +0.6 3.1 transcriptional regulator ExuR compare
IAI47_12435 +0.6 1.4 hypothetical protein compare
IAI47_08800 +0.6 1.9 YoaH family protein compare
IAI47_00445 +0.6 4.5 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_00905 +0.6 3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_15595 +0.6 0.9 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_11400 +0.6 4.0 hypothetical protein compare
IAI47_11220 +0.6 3.0 serine/threonine-protein phosphatase compare
IAI47_03920 +0.6 4.7 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_10745 +0.6 2.2 superoxide dismutase family protein compare
IAI47_08080 +0.6 2.6 hypothetical protein compare
IAI47_15995 +0.6 1.2 leu operon leader peptide compare
IAI47_02595 +0.6 4.3 GTPase HflX compare
IAI47_15605 +0.6 1.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_07630 +0.6 3.5 glyoxylate/hydroxypyruvate reductase A compare
IAI47_06490 +0.6 5.4 Ig-like domain-containing protein compare
IAI47_18265 +0.5 1.2 Sec-independent protein translocase subunit TatB compare
IAI47_21765 +0.5 0.8 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_19935 +0.5 2.1 hypothetical protein compare
IAI47_12140 +0.5 2.9 flagellar basal-body rod protein FlgG compare
IAI47_08145 +0.5 4.6 flagellin FliC compare
IAI47_04235 +0.5 4.5 RNA polymerase sigma factor RpoS compare
IAI47_07475 +0.5 0.5 hypothetical protein compare
IAI47_08160 +0.5 3.3 RNA polymerase sigma factor FliA compare
IAI47_16375 +0.5 4.0 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
IAI47_00830 +0.5 3.8 aquaporin family protein compare
IAI47_15460 +0.5 2.0 ribonuclease HII compare
IAI47_07350 +0.5 0.6 hypothetical protein compare
IAI47_14635 +0.5 4.0 peptidylprolyl isomerase compare
IAI47_07970 +0.5 2.9 flagellar type III secretion system protein FliR compare
IAI47_04710 +0.5 1.5 hypothetical protein compare
IAI47_02345 +0.5 0.7 5S ribosomal RNA compare
IAI47_15895 +0.5 1.2 secA regulator SecM compare
IAI47_05705 +0.5 1.9 DNA polymerase III subunit theta compare
IAI47_10225 +0.5 1.9 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_11445 +0.5 2.1 ankyrin repeat domain-containing protein compare
IAI47_11475 +0.5 0.8 hypothetical protein compare
IAI47_03240 +0.5 2.0 TonB system transport protein ExbD compare
IAI47_16245 +0.5 3.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
IAI47_05830 +0.4 0.9 hypothetical protein compare
IAI47_10500 +0.4 3.3 dipeptide/tripeptide permease DtpA compare
IAI47_12155 +0.4 3.1 flagellar hook assembly protein FlgD compare
IAI47_12930 +0.4 1.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_10795 +0.4 2.5 HTH-type transcriptional repressor PurR compare
IAI47_03100 +0.4 3.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
IAI47_17050 +0.4 2.5 preprotein translocase subunit SecG compare
IAI47_21665 +0.4 0.9 DUF333 domain-containing protein compare
IAI47_01335 +0.4 2.1 CPBP family intramembrane metalloprotease compare
IAI47_09845 +0.4 1.9 hypothetical protein compare
IAI47_12165 +0.4 2.2 flagellar basal body rod protein FlgB compare
IAI47_07275 +0.4 2.4 DUF2058 domain-containing protein compare
IAI47_16190 +0.4 2.3 molybdopterin adenylyltransferase compare
IAI47_19735 +0.4 2.8 sigma-70 family RNA polymerase sigma factor compare
IAI47_14965 +0.4 0.9 hypothetical protein compare
IAI47_07980 +0.4 2.5 flagellar type III secretion system pore protein FliP compare
IAI47_06910 +0.4 2.5 dCTP deaminase compare
IAI47_17630 +0.4 3.4 amidohydrolase compare
IAI47_21780 +0.4 1.8 hypothetical protein compare
IAI47_07985 +0.4 2.4 flagellar biosynthetic protein FliO compare
IAI47_05665 +0.4 1.8 hypothetical protein compare
IAI47_04905 +0.4 2.5 YfhL family 4Fe-4S dicluster ferredoxin compare
IAI47_15710 +0.4 2.9 polyamine aminopropyltransferase compare
IAI47_12985 +0.4 1.2 heavy metal-binding domain-containing protein compare
IAI47_08345 +0.4 3.0 flagellar type III secretion system protein FlhB compare
IAI47_05850 +0.4 1.6 NinF family protein compare
IAI47_19780 +0.4 2.4 TetR/AcrR family transcriptional regulator compare
IAI47_06505 +0.4 3.3 type I secretion system permease/ATPase compare
IAI47_08525 +0.4 2.3 DNA polymerase III subunit theta compare
IAI47_03565 +0.4 2.9 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
IAI47_18420 +0.4 3.1 class I adenylate cyclase compare
IAI47_17020 +0.4 0.9 30S ribosome-binding factor RbfA compare
IAI47_07455 +0.4 1.7 hypothetical protein compare
IAI47_15155 +0.4 1.5 DUF943 family protein compare
IAI47_16250 +0.4 1.4 inosine/xanthosine triphosphatase compare
IAI47_10550 +0.4 1.3 two-component-system connector protein YcgZ compare
IAI47_18770 +0.4 1.1 type I addiction module toxin, SymE family compare
IAI47_04950 +0.4 2.8 nitrogen regulatory protein P-II compare
IAI47_09195 +0.4 2.2 PHP domain-containing protein compare
IAI47_03215 +0.4 2.7 cystathionine beta-lyase compare
IAI47_08340 +0.4 2.2 protein phosphatase CheZ compare
IAI47_07025 +0.4 1.8 glycosyltransferase family 4 protein compare
IAI47_02725 +0.4 2.1 gamma-glutamylcyclotransferase compare
IAI47_10845 +0.4 1.2 major outer membrane lipoprotein compare
IAI47_21720 +0.4 1.9 efflux RND transporter periplasmic adaptor subunit compare
IAI47_04450 +0.4 0.8 tRNA-Ala compare
IAI47_16415 +0.4 2.9 nucleoside hydrolase compare
IAI47_10835 +0.4 0.4 tRNA-Val compare
IAI47_09870 +0.4 1.7 LacI family DNA-binding transcriptional regulator compare
IAI47_13980 +0.4 2.5 glutamate/aspartate ABC transporter permease GltK compare
IAI47_12625 +0.4 2.4 YccF domain-containing protein compare
IAI47_00320 +0.4 2.8 ATPase RavA stimulator ViaA compare
IAI47_18240 +0.4 1.0 NAD(P)H-flavin reductase compare
IAI47_00565 +0.4 1.2 DUF3289 family protein compare
IAI47_21240 +0.4 2.1 hypothetical protein compare
IAI47_15715 +0.4 3.0 adenosylmethionine decarboxylase compare
IAI47_18480 +0.4 2.4 lipid III flippase WzxE compare
IAI47_17015 +0.4 2.6 tRNA pseudouridine(55) synthase TruB compare
IAI47_03385 +0.4 1.6 DUF1328 domain-containing protein compare
IAI47_04775 +0.4 1.2 SIR2 family protein compare
IAI47_03570 +0.4 1.1 YggL family protein compare
IAI47_00325 +0.3 2.9 ATPase RavA compare
IAI47_03235 +0.3 1.7 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_10760 +0.3 2.2 TetR/AcrR family transcriptional regulator compare
IAI47_06840 +0.3 2.1 lipid kinase YegS compare
IAI47_07910 +0.3 2.8 DNA (cytosine-5-)-methyltransferase compare
IAI47_12555 +0.3 1.8 hypothetical protein compare
IAI47_06845 +0.3 2.7 tRNA 5-hydroxyuridine modification protein YegQ compare
IAI47_12740 +0.3 1.3 aliphatic sulfonates ABC transporter ATP-binding protein compare
IAI47_18550 +0.3 1.2 peptidylprolyl isomerase compare
IAI47_08295 +0.3 2.7 flagellar motor protein MotB compare
IAI47_09470 +0.3 1.5 hypothetical protein compare
IAI47_05405 +0.3 2.0 cysteine synthase CysM compare
IAI47_20005 +0.3 1.1 PTS sugar transporter subunit IIA compare
IAI47_06650 +0.3 2.4 fused PTS fructose transporter subunit IIA/HPr protein compare
IAI47_12125 +0.3 2.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_19385 +0.3 2.0 (2Fe-2S)-binding protein compare
IAI47_04855 +0.3 1.3 anti-sigma-E factor RseA compare
IAI47_10565 +0.3 0.7 DUF4113 domain-containing protein compare
IAI47_09155 +0.3 2.4 outer membrane protein OmpW compare
IAI47_05375 +0.3 1.5 DUF2919 domain-containing protein compare
IAI47_12175 +0.3 1.2 anti-sigma-28 factor FlgM compare
IAI47_00120 +0.3 1.9 sugar kinase compare
IAI47_09020 +0.3 2.3 patatin-like phospholipase RssA compare
IAI47_00605 +0.3 1.9 nucleoid occlusion factor SlmA compare
IAI47_03610 +0.3 1.2 YqgE/AlgH family protein compare
IAI47_08485 +0.3 2.4 pyruvate kinase compare
IAI47_04945 +0.3 2.2 two-component system response regulator GlrR compare
IAI47_06700 +0.3 1.9 S-formylglutathione hydrolase compare
IAI47_18065 +0.3 1.8 deoxyribonuclease V compare
IAI47_13620 +0.3 2.7 transporter substrate-binding domain-containing protein compare
IAI47_20595 +0.3 1.2 GhoT/OrtT family toxin compare
IAI47_06065 +0.3 1.3 cytochrome c biogenesis heme-transporting ATPase CcmA compare
IAI47_12320 +0.3 1.8 hotdog family protein compare
IAI47_18270 +0.3 1.2 twin-arginine translocase TatA/TatE family subunit compare
IAI47_03130 +0.3 2.2 DUF1190 family protein compare
IAI47_10690 +0.3 1.6 hypothetical protein compare
IAI47_12375 +0.3 0.7 acyl carrier protein compare
IAI47_05950 +0.3 1.1 head-tail adaptor compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Ying_Others16 in Pantoea sp. MT58

For carbon source Ying_Others16 across organisms