Experiment set10S429 for Pantoea sp. MT58

Compare to:

Ying_AminoAcid20 rep C; time point 1

200 most important genes:

  gene name fitness t score description  
IAI47_18830 -3.7 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_12215 -3.5 -13.7 dihydroorotase compare
IAI47_06275 -3.4 -19.2 amidophosphoribosyltransferase compare
IAI47_09275 -3.4 -10.7 orotidine-5'-phosphate decarboxylase compare
IAI47_18045 -3.3 -11.8 phosphoribosylamine--glycine ligase compare
IAI47_12705 -3.3 -14.3 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_04930 -3.3 -19.3 phosphoribosylformylglycinamidine synthase compare
IAI47_18040 -3.2 -17.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_02750 -3.2 -16.6 class 1 fructose-bisphosphatase compare
IAI47_11930 -3.1 -6.1 two-component system response regulator PhoP compare
IAI47_05180 -3.0 -14.7 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_00600 -3.0 -11.7 orotate phosphoribosyltransferase compare
IAI47_16860 -3.0 -15.1 aspartate carbamoyltransferase compare
IAI47_16115 -3.0 -19.6 carbamoyl-phosphate synthase large subunit compare
IAI47_16420 -2.9 -17.8 LacI family DNA-binding transcriptional regulator compare
IAI47_14355 -2.9 -11.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_05420 -2.9 -1.9 PTS glucose transporter subunit IIA compare
IAI47_16120 -2.9 -12.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_05275 -2.9 -7.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_06395 -2.8 -2.6 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_14350 -2.7 -8.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_13755 -2.6 -7.6 succinate dehydrogenase flavoprotein subunit compare
IAI47_13745 -2.5 -2.9 2-oxoglutarate dehydrogenase E1 component compare
IAI47_06420 -2.5 -4.0 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_06410 -2.4 -6.1 NADH-quinone oxidoreductase subunit L compare
IAI47_11935 -2.3 -14.4 two-component system sensor histidine kinase PhoQ compare
IAI47_16390 -2.3 -1.5 tRNA-Leu compare
IAI47_06390 -2.2 -3.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_15635 -2.2 -2.5 RNA polymerase-binding protein DksA compare
IAI47_17035 -2.2 -4.1 ribosome maturation factor RimP compare
IAI47_13750 -2.2 -3.6 succinate dehydrogenase iron-sulfur subunit compare
IAI47_08705 -2.2 -11.8 carboxy terminal-processing peptidase compare
IAI47_09305 -2.2 -2.9 cyclic di-GMP phosphodiesterase compare
IAI47_15810 -2.1 -2.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_04605 -2.1 -13.2 magnesium-translocating P-type ATPase compare
IAI47_12645 -2.1 -4.5 porin OmpA compare
IAI47_06405 -2.0 -3.9 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_06415 -2.0 -4.3 NADH-quinone oxidoreductase subunit M compare
IAI47_00735 -1.9 -2.5 protein-export chaperone SecB compare
IAI47_13950 -1.9 -2.1 PhoH family protein compare
IAI47_17965 -1.9 -12.1 glucose-6-phosphate isomerase compare
IAI47_13760 -1.9 -3.2 succinate dehydrogenase membrane anchor subunit compare
IAI47_06385 -1.9 -4.6 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_06055 -1.8 -5.1 tRNA-Arg compare
IAI47_13740 -1.8 -1.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_01120 -1.8 -9.1 manganese efflux pump MntP compare
IAI47_13180 -1.8 -7.4 manganese-binding transcriptional regulator MntR compare
IAI47_09235 -1.7 -1.9 type I DNA topoisomerase compare
IAI47_00375 -1.7 -14.5 ribose operon transcriptional repressor RbsR compare
IAI47_12175 -1.7 -3.7 anti-sigma-28 factor FlgM compare
IAI47_00875 -1.7 -2.4 met regulon transcriptional regulator MetJ compare
IAI47_13765 -1.7 -2.8 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_06360 -1.7 -2.8 NADH-quinone oxidoreductase subunit A compare
IAI47_06365 -1.6 -3.9 NADH-quinone oxidoreductase subunit B compare
IAI47_16870 -1.5 -6.6 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_05510 -1.5 -9.4 putative DNA-binding transcriptional regulator compare
IAI47_17020 -1.5 -3.0 30S ribosome-binding factor RbfA compare
IAI47_06380 -1.5 -2.3 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_17235 -1.5 -9.9 stringent starvation protein A compare
IAI47_14690 -1.4 -5.6 cytochrome o ubiquinol oxidase subunit III compare
IAI47_06400 -1.4 -2.5 NADH-quinone oxidoreductase subunit J compare
IAI47_08165 -1.3 -7.2 flagella biosynthesis regulatory protein FliZ compare
IAI47_13840 -1.3 -3.4 replication initiation negative regulator SeqA compare
IAI47_17000 -1.3 -8.5 lipoprotein NlpI compare
IAI47_14685 -1.3 -8.0 cytochrome o ubiquinol oxidase subunit I compare
IAI47_02400 -1.3 -1.9 YhdT family protein compare
IAI47_02515 -1.2 -4.7 transcriptional regulator ArgR compare
IAI47_01765 -1.2 -7.2 DeoR/GlpR family transcriptional regulator compare
IAI47_13900 -1.2 -9.0 asparagine synthase B compare
IAI47_04835 -1.2 -6.9 ATP-dependent RNA helicase SrmB compare
IAI47_04110 -1.2 -10.9 two-component sensor histidine kinase BarA compare
IAI47_17120 -1.2 -2.5 BolA family iron metabolism protein IbaG compare
IAI47_00300 -1.2 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_13770 -1.2 -7.8 citrate synthase compare
IAI47_11475 -1.2 -1.4 hypothetical protein compare
IAI47_06370 -1.1 -3.6 NADH-quinone oxidoreductase subunit C/D compare
IAI47_06965 -1.1 -1.1 glycosyltransferase family 2 protein compare
IAI47_20110 -1.1 -7.6 Glu/Leu/Phe/Val dehydrogenase compare
IAI47_13195 -1.1 -6.5 DNA starvation/stationary phase protection protein Dps compare
IAI47_00465 -1.1 -4.1 ribosome-dependent GTPase TypA compare
IAI47_06235 -1.1 -5.5 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_12470 -1.1 -8.0 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_06475 -1.1 -4.0 transcriptional regulator RcsB compare
IAI47_00935 -1.1 -4.6 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_01365 -1.1 -2.0 inorganic phosphate transporter PitA compare
IAI47_10925 -1.1 -2.7 EAL domain-containing protein compare
IAI47_13155 -1.1 -2.5 H-NS histone family protein compare
IAI47_17900 -1.1 -1.6 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_13795 -1.0 -6.0 5-oxoprolinase subunit PxpA compare
IAI47_14680 -1.0 -4.1 cytochrome o ubiquinol oxidase subunit II compare
IAI47_13695 -1.0 -0.6 colicin uptake protein TolR compare
IAI47_00515 -1.0 -2.0 DNA-directed RNA polymerase subunit omega compare
IAI47_08085 -1.0 -4.2 helix-turn-helix domain-containing protein compare
IAI47_12570 -1.0 -1.0 tRNA-Ser compare
IAI47_01780 -1.0 -1.6 Fe-S biogenesis protein NfuA compare
IAI47_09040 -0.9 -1.3 NAD-dependent epimerase compare
IAI47_19215 -0.9 -6.8 hypothetical protein compare
IAI47_14700 -0.9 -4.5 protoheme IX farnesyltransferase compare
IAI47_05035 -0.9 -2.3 nucleoside-diphosphate kinase compare
IAI47_07955 -0.9 -2.2 protein DsrB compare
IAI47_05175 -0.9 -5.8 phosphoribosylglycinamide formyltransferase compare
IAI47_17250 -0.9 -6.8 cell division protein ZapE compare
IAI47_03805 -0.9 -3.3 FAD assembly factor SdhE compare
IAI47_05520 -0.9 -1.0 tRNA-Ala compare
IAI47_08195 -0.9 -7.4 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase conserved
IAI47_17005 -0.9 -4.1 polyribonucleotide nucleotidyltransferase compare
IAI47_06355 -0.9 -5.2 transcriptional regulator LrhA compare
IAI47_05090 -0.9 -2.3 hypothetical protein compare
IAI47_08450 -0.8 -2.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_16085 -0.8 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_08445 -0.8 -0.9 Holliday junction branch migration protein RuvA compare
IAI47_12790 -0.8 -1.0 chromosome partition protein MukE compare
IAI47_15115 -0.8 -4.9 glutamate-5-semialdehyde dehydrogenase compare
IAI47_08965 -0.8 -5.5 asparaginase compare
IAI47_04950 -0.8 -5.0 nitrogen regulatory protein P-II compare
IAI47_20625 -0.8 -2.2 DUF2946 domain-containing protein compare
IAI47_14695 -0.8 -2.9 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_14945 -0.8 -1.9 pyrroline-5-carboxylate reductase compare
IAI47_15980 -0.8 -5.5 catabolite repressor/activator compare
IAI47_18420 -0.8 -5.5 class I adenylate cyclase compare
IAI47_06270 -0.8 -5.0 colicin V production protein compare
IAI47_01475 -0.8 -4.1 MurR/RpiR family transcriptional regulator compare
IAI47_00460 -0.8 -1.1 glutamate--ammonia ligase compare
IAI47_13065 -0.8 -1.7 DUF1418 family protein compare
IAI47_00725 -0.8 -3.0 rhodanese-like domain-containing protein compare
IAI47_05330 -0.8 -6.3 L-asparagine permease compare
IAI47_12060 -0.8 -3.0 beta-ketoacyl-ACP synthase II compare
IAI47_00930 -0.7 -4.7 DNA-binding transcriptional regulator OxyR compare
IAI47_00595 -0.7 -3.9 ribonuclease PH compare
IAI47_04235 -0.7 -5.9 RNA polymerase sigma factor RpoS compare
IAI47_07965 -0.7 -3.4 transcriptional regulator RcsA compare
IAI47_03905 -0.7 -5.1 TerC family protein compare
IAI47_10590 -0.7 -3.2 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_01180 -0.7 -1.2 prolyl oligopeptidase family serine peptidase compare
IAI47_08355 -0.7 -1.5 flagellar protein FlhE compare
IAI47_07475 -0.7 -0.9 hypothetical protein compare
IAI47_04105 -0.7 -4.3 glycerate kinase compare
IAI47_02345 -0.7 -1.0 5S ribosomal RNA compare
IAI47_13885 -0.7 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_14325 -0.7 -1.0 ribosome-associated protein YbcJ compare
IAI47_13635 -0.7 -4.4 quinolinate synthase NadA compare
IAI47_11950 -0.7 -4.1 NAD-dependent protein deacylase compare
IAI47_11735 -0.7 -1.7 histidinol-phosphatase compare
IAI47_04870 -0.7 -3.1 elongation factor 4 compare
IAI47_08785 -0.7 -5.7 L-serine ammonia-lyase compare
IAI47_18145 -0.7 -1.3 elongation factor Tu compare
IAI47_12865 -0.7 -4.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_01135 -0.7 -0.6 hypothetical protein compare
IAI47_17230 -0.6 -4.3 ClpXP protease specificity-enhancing factor compare
IAI47_12655 -0.6 -4.9 Lon protease family protein compare
IAI47_14940 -0.6 -1.1 YaiI/YqxD family protein compare
IAI47_02590 -0.6 -2.4 RNA chaperone Hfq compare
IAI47_19750 -0.6 -1.9 GNAT family N-acetyltransferase compare
IAI47_11480 -0.6 -1.6 hypothetical protein compare
IAI47_04995 -0.6 -4.3 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ compare
IAI47_13495 -0.6 -3.1 GTP 3',8-cyclase MoaA compare
IAI47_03150 -0.6 -4.5 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_08700 -0.6 -3.1 RNA chaperone ProQ compare
IAI47_21665 -0.6 -1.2 DUF333 domain-containing protein compare
IAI47_03375 -0.6 -4.0 peptide chain release factor 3 compare
IAI47_16080 -0.6 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_09550 -0.6 -2.4 hypothetical protein compare
IAI47_08850 -0.6 -2.7 septum site-determining protein MinD compare
IAI47_12305 -0.6 -3.1 hypothetical protein compare
IAI47_16915 -0.6 -3.4 HTH-type transcriptional regulator GalR compare
IAI47_14985 -0.6 -2.7 hypothetical protein compare
IAI47_09245 -0.6 -2.0 YmiA family putative membrane protein compare
IAI47_01525 -0.6 -2.6 DUF2500 domain-containing protein compare
IAI47_11535 -0.6 -1.7 DcrB-related protein compare
IAI47_05070 -0.6 -0.4 outer membrane protein assembly factor BamB compare
IAI47_08405 -0.6 -3.8 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI47_03725 -0.6 -3.5 phosphoglycerate dehydrogenase compare
IAI47_21335 -0.6 -1.4 RepB family plasmid replication initiator protein compare
IAI47_12110 -0.6 -1.8 ribonuclease E compare
IAI47_07525 -0.6 -1.6 conjugal transfer protein TraD compare
IAI47_08205 -0.6 -3.8 sodium/proline symporter PutP conserved
IAI47_02035 -0.6 -1.6 YheV family putative metal-binding protein compare
IAI47_03640 -0.6 -4.7 glycosyltransferase compare
IAI47_00455 -0.6 -3.6 nitrogen regulation protein NR(II) compare
IAI47_05120 -0.6 -1.9 DUF2158 domain-containing protein compare
IAI47_00945 -0.5 -2.0 YijD family membrane protein compare
IAI47_01380 -0.5 -2.3 hypothetical protein compare
IAI47_16350 -0.5 -3.2 phosphoserine phosphatase compare
IAI47_06755 -0.5 -4.1 NAD-dependent malic enzyme compare
IAI47_21880 -0.5 -0.5 ParA family protein compare
IAI47_11880 -0.5 -1.3 hypothetical protein compare
IAI47_11550 -0.5 -1.2 hypothetical protein compare
IAI47_18470 -0.5 -4.2 ECA oligosaccharide polymerase compare
IAI47_00730 -0.5 -1.4 glutaredoxin 3 compare
IAI47_18385 -0.5 -3.9 magnesium/cobalt transporter CorA compare
IAI47_19880 -0.5 -3.4 LysR family transcriptional regulator compare
IAI47_17155 -0.5 -3.7 calcium/sodium antiporter compare
IAI47_20705 -0.5 -0.8 sulfur carrier protein ThiS compare
IAI47_06920 -0.5 -4.0 TerC family protein compare
IAI47_07800 -0.5 -2.3 phosphonate ABC transporter ATP-binding protein compare
IAI47_09955 -0.5 -1.7 SDR family oxidoreductase compare
IAI47_16520 -0.5 -3.1 hypothetical protein compare
IAI47_14060 -0.5 -2.2 twin-arginine translocase subunit TatE compare
IAI47_18595 -0.5 -3.8 endoglucanase compare
IAI47_11615 -0.5 -3.1 type VI secretion system-associated FHA domain protein TagH compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in carbon source experiments

For carbon source Ying_AminoAcid20 across organisms