Experiment set10S425 for Pantoea sp. MT58

Compare to:

Ying_sugar7 rep B; time point 1

200 most detrimental genes:

  gene name fitness t score description  
IAI47_13700 +1.6 6.7 Tol-Pal system protein TolQ compare
IAI47_14470 +1.2 2.7 YbaB/EbfC family nucleoid-associated protein compare
IAI47_07905 +1.2 1.5 Arc family DNA-binding protein compare
IAI47_13720 +1.2 5.9 cytochrome d ubiquinol oxidase subunit II compare
IAI47_12925 +1.1 4.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_08285 +1.0 7.6 flagellar transcriptional regulator FlhC compare
IAI47_13685 +1.0 2.6 Tol-Pal system protein TolB compare
IAI47_10835 +1.0 1.4 tRNA-Val compare
IAI47_01750 +1.0 5.2 glycerol-3-phosphate dehydrogenase compare
IAI47_07980 +1.0 6.2 flagellar type III secretion system pore protein FliP compare
IAI47_19050 +0.9 2.8 hypothetical protein compare
IAI47_18715 +0.9 2.2 YibL family ribosome-associated protein compare
IAI47_07970 +0.9 5.9 flagellar type III secretion system protein FliR compare
IAI47_06455 +0.9 5.1 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_09245 +0.9 3.7 YmiA family putative membrane protein compare
IAI47_19945 +0.9 1.1 hypothetical protein compare
IAI47_11210 +0.9 6.3 type VI secretion system-associated protein TagF compare
IAI47_08280 +0.9 6.6 flagellar transcriptional regulator FlhD compare
IAI47_07010 +0.8 2.2 ABC transporter permease compare
IAI47_15600 +0.8 1.6 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_07005 +0.8 3.2 glycosyltransferase family 4 protein compare
IAI47_07985 +0.8 5.3 flagellar biosynthetic protein FliO compare
IAI47_13695 +0.8 0.7 colicin uptake protein TolR compare
IAI47_12140 +0.8 5.4 flagellar basal-body rod protein FlgG compare
IAI47_21450 +0.8 1.0 general stress protein compare
IAI47_18265 +0.8 1.5 Sec-independent protein translocase subunit TatB compare
IAI47_12155 +0.8 5.9 flagellar hook assembly protein FlgD compare
IAI47_17205 +0.8 1.6 PTS phosphocarrier protein NPr compare
IAI47_18270 +0.8 3.9 twin-arginine translocase TatA/TatE family subunit compare
IAI47_12375 +0.8 2.0 acyl carrier protein compare
IAI47_12930 +0.8 3.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_19690 +0.7 1.4 hypothetical protein compare
IAI47_13725 +0.7 4.0 cytochrome ubiquinol oxidase subunit I compare
IAI47_21880 +0.7 0.9 ParA family protein compare
IAI47_15895 +0.7 1.6 secA regulator SecM compare
IAI47_12165 +0.7 4.9 flagellar basal body rod protein FlgB compare
IAI47_08020 +0.7 5.1 flagellar assembly protein FliH compare
IAI47_20705 +0.7 1.4 sulfur carrier protein ThiS compare
IAI47_21830 +0.7 1.7 hypothetical protein compare
IAI47_08345 +0.7 5.7 flagellar type III secretion system protein FlhB compare
IAI47_16995 +0.7 1.8 protein YrbN compare
IAI47_20600 +0.7 1.8 hypothetical protein compare
IAI47_12125 +0.7 4.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_12130 +0.7 5.5 flagellar basal body P-ring protein FlgI compare
IAI47_12150 +0.7 5.7 flagellar hook protein FlgE compare
IAI47_08030 +0.7 4.9 flagellar M-ring protein FliF compare
IAI47_12145 +0.7 3.7 flagellar basal body rod protein FlgF compare
IAI47_05125 +0.7 2.2 hypothetical protein compare
IAI47_12160 +0.6 4.5 flagellar basal body rod protein FlgC compare
IAI47_11215 +0.6 5.3 type VI secretion system-associated FHA domain protein TagH compare
IAI47_13925 +0.6 1.5 tRNA-Met compare
IAI47_11375 +0.6 1.0 hypothetical protein compare
IAI47_12135 +0.6 5.2 flagellar basal body L-ring protein FlgH compare
IAI47_08160 +0.6 3.7 RNA polymerase sigma factor FliA compare
IAI47_02600 +0.6 5.1 FtsH protease activity modulator HflK compare
IAI47_01820 +0.6 4.2 two-component system response regulator OmpR compare
IAI47_06450 +0.6 2.2 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_03400 +0.6 3.9 deoxyribose-phosphate aldolase compare
IAI47_00770 +0.6 0.6 general stress protein compare
IAI47_19675 +0.6 2.1 ParD-like family protein compare
IAI47_06625 +0.6 4.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_16320 +0.6 4.0 DNA-binding transcriptional repressor DeoR compare
IAI47_03195 +0.6 1.6 cell division protein FtsP compare
IAI47_07975 +0.6 2.3 flagellar biosynthesis protein FliQ compare
IAI47_15970 +0.6 0.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_11830 +0.6 4.0 muramoyltetrapeptide carboxypeptidase compare
IAI47_07995 +0.6 4.4 flagellar motor switch protein FliM compare
IAI47_05745 +0.6 1.1 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_09580 +0.6 2.3 FNR family transcription factor compare
IAI47_05580 +0.6 1.4 membrane protein YpdK compare
IAI47_19295 +0.6 1.2 hypothetical protein compare
IAI47_13075 +0.6 3.2 hypothetical protein compare
IAI47_12170 +0.5 3.6 flagellar basal body P-ring formation protein FlgA compare
IAI47_00825 +0.5 4.7 glycerol kinase GlpK compare
IAI47_15595 +0.5 0.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_00445 +0.5 4.4 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_08005 +0.5 3.3 flagellar hook-length control protein FliK compare
IAI47_06565 +0.5 1.2 YejL family protein compare
IAI47_19275 +0.5 2.2 DMT family transporter compare
IAI47_18580 +0.5 4.3 insulinase family protein compare
IAI47_02605 +0.5 4.0 protease modulator HflC compare
IAI47_00655 +0.5 1.8 glycosyltransferase family 4 protein compare
IAI47_08015 +0.5 3.7 flagellum-specific ATP synthase FliI compare
IAI47_02900 +0.5 2.9 transcriptional regulator ExuR compare
IAI47_05850 +0.5 2.4 NinF family protein compare
IAI47_08010 +0.5 2.9 flagella biosynthesis chaperone FliJ compare
IAI47_05630 +0.5 1.3 hypothetical protein compare
IAI47_18840 +0.5 1.9 membrane protein insertion efficiency factor YidD compare
IAI47_09550 +0.5 2.5 hypothetical protein compare
IAI47_07475 +0.5 0.8 hypothetical protein compare
IAI47_07025 +0.5 2.7 glycosyltransferase family 4 protein compare
IAI47_08350 +0.5 3.9 flagellar biosynthesis protein FlhA compare
IAI47_05525 +0.5 0.8 tRNA-Ala compare
IAI47_10795 +0.5 3.1 HTH-type transcriptional repressor PurR compare
IAI47_05770 +0.5 1.4 hypothetical protein compare
IAI47_01825 +0.5 3.4 two-component system sensor histidine kinase EnvZ compare
IAI47_17560 +0.5 0.5 ROK family transcriptional regulator compare
IAI47_02750 +0.5 4.1 class 1 fructose-bisphosphatase compare
IAI47_05325 +0.4 1.3 DUF1471 domain-containing protein compare
IAI47_21610 +0.4 3.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_08000 +0.4 3.3 flagellar basal body-associated protein FliL compare
IAI47_11655 +0.4 1.4 hypothetical protein compare
IAI47_07990 +0.4 2.1 flagellar motor switch protein FliN compare
IAI47_11220 +0.4 2.6 serine/threonine-protein phosphatase compare
IAI47_09120 +0.4 1.8 hypothetical protein compare
IAI47_05860 +0.4 2.5 YlcG family protein compare
IAI47_16405 +0.4 1.6 siderophore-iron reductase FhuF compare
IAI47_20440 +0.4 2.2 SDR family oxidoreductase compare
IAI47_15980 +0.4 3.4 catabolite repressor/activator compare
IAI47_11415 +0.4 0.7 hypothetical protein compare
IAI47_08045 +0.4 1.3 NUDIX domain-containing protein compare
IAI47_13640 +0.4 1.7 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_08025 +0.4 2.9 flagellar motor switch protein FliG compare
IAI47_13890 +0.4 2.7 ROK family transcriptional regulator compare
IAI47_08675 +0.4 2.0 metallophosphoesterase compare
IAI47_04855 +0.4 1.8 anti-sigma-E factor RseA compare
IAI47_21115 +0.4 1.1 arsenate reductase (glutaredoxin) compare
IAI47_04575 +0.4 3.2 spermidine N1-acetyltransferase compare
IAI47_05705 +0.4 1.7 DNA polymerase III subunit theta compare
IAI47_18480 +0.4 2.6 lipid III flippase WzxE compare
IAI47_11610 +0.4 2.7 serine/threonine-protein phosphatase compare
IAI47_14630 +0.4 2.2 helix-hairpin-helix domain-containing protein compare
IAI47_08290 +0.4 2.9 flagellar motor stator protein MotA compare
IAI47_19430 +0.4 1.5 GNAT family N-acetyltransferase compare
IAI47_20450 +0.4 2.4 LysR family transcriptional regulator compare
IAI47_10360 +0.4 2.9 pyridoxal phosphate-dependent aminotransferase compare
IAI47_17050 +0.4 2.1 preprotein translocase subunit SecG compare
IAI47_07030 +0.4 2.7 HAD family hydrolase compare
IAI47_18420 +0.4 3.1 class I adenylate cyclase compare
IAI47_00830 +0.4 3.1 aquaporin family protein compare
IAI47_10455 +0.4 1.3 electron transport complex subunit RsxC compare
IAI47_11685 +0.4 2.7 DotU family type VI secretion system protein compare
IAI47_20585 +0.4 2.2 dihydroxyacetone kinase subunit DhaK compare
IAI47_07885 +0.4 0.6 tRNA-Asn compare
IAI47_10550 +0.4 1.6 two-component-system connector protein YcgZ compare
IAI47_14170 +0.4 1.4 hypothetical protein compare
IAI47_06445 +0.4 1.8 2Fe-2S ferredoxin-like protein compare
IAI47_09850 +0.4 3.1 beta-lactamase compare
IAI47_21655 +0.4 0.4 LacI family DNA-binding transcriptional regulator compare
IAI47_04095 +0.4 2.0 2-dehydro-3-deoxyglucarate aldolase compare
IAI47_05840 +0.4 2.3 recombination protein NinB compare
IAI47_04800 +0.4 0.4 RnfH family protein compare
IAI47_10320 +0.4 0.6 Rrf2 family transcriptional regulator compare
IAI47_06650 +0.4 2.5 fused PTS fructose transporter subunit IIA/HPr protein compare
IAI47_18930 +0.4 1.5 carboxymuconolactone decarboxylase family protein compare
IAI47_16480 +0.4 1.6 YecA family protein compare
IAI47_21035 +0.4 1.1 TetR/AcrR family transcriptional regulator compare
IAI47_11515 +0.4 0.8 hypothetical protein compare
IAI47_00565 +0.4 1.8 DUF3289 family protein compare
IAI47_10275 +0.4 2.8 hypothetical protein compare
IAI47_20300 +0.4 2.4 hydrolase compare
IAI47_15605 +0.3 0.7 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_13560 +0.3 1.8 molybdate ABC transporter permease subunit compare
IAI47_14635 +0.3 2.9 peptidylprolyl isomerase compare
IAI47_14185 +0.3 2.0 DUF1349 domain-containing protein compare
IAI47_07550 +0.3 0.5 tRNA-Asn compare
IAI47_20500 +0.3 2.1 type II toxin-antitoxin system YhaV family toxin compare
IAI47_19080 +0.3 1.4 hypothetical protein compare
IAI47_00725 +0.3 1.9 rhodanese-like domain-containing protein compare
IAI47_05870 +0.3 1.9 lysis protein compare
IAI47_05295 +0.3 1.3 YpfN family protein compare
IAI47_12270 +0.3 2.1 YceK/YidQ family lipoprotein compare
IAI47_03865 +0.3 1.5 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_18770 +0.3 1.2 type I addiction module toxin, SymE family compare
IAI47_08035 +0.3 0.9 flagellar hook-basal body complex protein FliE compare
IAI47_07015 +0.3 1.7 ABC transporter ATP-binding protein compare
IAI47_03670 +0.3 1.5 DUF937 domain-containing protein compare
IAI47_06700 +0.3 2.3 S-formylglutathione hydrolase compare
IAI47_17475 +0.3 1.4 type VI secretion system contractile sheath small subunit compare
IAI47_19655 +0.3 1.5 hypothetical protein compare
IAI47_18940 +0.3 2.1 DUF4865 family protein compare
IAI47_02095 +0.3 1.3 bacterioferritin-associated ferredoxin compare
IAI47_04830 +0.3 1.2 autonomous glycyl radical cofactor GrcA compare
IAI47_19300 +0.3 2.4 hypothetical protein compare
IAI47_19030 +0.3 1.1 hypothetical protein compare
IAI47_08800 +0.3 1.1 YoaH family protein compare
IAI47_08340 +0.3 1.7 protein phosphatase CheZ compare
IAI47_11760 +0.3 0.5 TonB-dependent siderophore receptor compare
IAI47_04305 +0.3 2.0 regulatory protein RecX compare
IAI47_07020 +0.3 0.5 hypothetical protein compare
IAI47_15880 +0.3 0.9 DNA gyrase inhibitor YacG compare
IAI47_15460 +0.3 1.4 ribonuclease HII compare
IAI47_19500 +0.3 1.8 Insecticidal toxin complex protein tccz compare
IAI47_13710 +0.3 1.2 cyd operon protein YbgE compare
IAI47_14980 +0.3 1.3 hypothetical protein compare
IAI47_05420 +0.3 0.4 PTS glucose transporter subunit IIA compare
IAI47_19940 +0.3 1.1 hypothetical protein compare
IAI47_00940 +0.3 2.1 HTH-type transcriptional repressor FabR compare
IAI47_12355 +0.3 0.9 hydroxymyristoyl-ACP dehydratase compare
IAI47_07275 +0.3 1.6 DUF2058 domain-containing protein compare
IAI47_05845 +0.3 1.7 hypothetical protein compare
IAI47_07280 +0.3 1.6 RluA family pseudouridine synthase compare
IAI47_11630 +0.3 1.0 hypothetical protein compare
IAI47_21835 +0.3 2.1 N-acetyltransferase compare
IAI47_18710 +0.3 2.2 MltR family transcriptional regulator compare
IAI47_11850 +0.3 1.3 hypothetical protein compare
IAI47_20170 +0.3 2.1 ABC transporter permease compare
IAI47_20675 +0.3 2.2 sterol desaturase family protein compare
IAI47_20810 +0.3 1.6 carboxymuconolactone decarboxylase family protein compare
IAI47_19390 +0.3 1.9 xanthine dehydrogenase family protein subunit M compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in carbon source experiments

For carbon source Ying_sugar7 across organisms