Experiment set10S409 for Enterobacter sp. TBS_079

Compare to:

L-Citrulline nitrogen source

200 most important genes:

  gene name fitness t score description  
MPMX20_00831 -6.6 -4.6 RNA polymerase-binding transcription factor DksA compare
MPMX20_00086 -6.1 -5.9 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_02514 -5.8 -5.6 Tryptophan synthase alpha chain compare
MPMX20_00693 -5.6 -10.7 Phosphoserine phosphatase compare
MPMX20_03006 -5.4 -8.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_01349 -5.3 -3.7 Citrate synthase compare
MPMX20_03771 -5.2 -12.6 D-3-phosphoglycerate dehydrogenase compare
MPMX20_00766 -5.2 -8.6 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_01566 -5.1 -15.5 Phosphoserine aminotransferase compare
MPMX20_02511 -5.1 -12.8 Bifunctional protein TrpGD compare
MPMX20_03466 -5.0 -12.4 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_02510 -4.8 -16.1 Anthranilate synthase component 1 compare
MPMX20_02494 -4.7 -7.9 Orotidine 5'-phosphate decarboxylase compare
MPMX20_03007 -4.6 -8.5 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_00711 -4.6 -14.0 Homoserine kinase compare
MPMX20_01367 -4.6 -8.7 Tol-Pal system protein TolR compare
MPMX20_01354 -4.5 -4.4 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_03468 -4.4 -9.9 T-protein compare
MPMX20_03264 -4.4 -6.0 Chorismate synthase compare
MPMX20_04497 -4.4 -10.0 HTH-type transcriptional regulator GltC compare
MPMX20_03338 -4.4 -6.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00768 -4.4 -13.8 3-isopropylmalate dehydrogenase compare
MPMX20_01320 -4.3 -15.5 Asparagine synthetase B [glutamine-hydrolyzing] compare
MPMX20_04189 -4.3 -5.2 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_04499 -4.3 -15.5 Dihydroxy-acid dehydratase compare
MPMX20_04319 -4.3 -11.1 HTH-type transcriptional regulator GntR compare
MPMX20_04624 -4.3 -12.9 Regulatory protein AsnC compare
MPMX20_04596 -4.3 -11.4 Sensory histidine kinase/phosphatase NtrB compare
MPMX20_03705 -4.2 -11.2 Diaminopimelate decarboxylase compare
MPMX20_01567 -4.2 -7.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_00928 -4.2 -13.9 Gamma-glutamyl phosphate reductase compare
MPMX20_03004 -4.2 -10.1 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_02513 -4.1 -13.7 Tryptophan synthase beta chain compare
MPMX20_03002 -4.1 -13.8 Histidinol dehydrogenase compare
MPMX20_03426 -4.1 -17.2 Phosphoribosylformylglycinamidine synthase compare
MPMX20_04077 -4.1 -12.7 Argininosuccinate synthase compare
MPMX20_04597 -4.1 -9.8 DNA-binding transcriptional regulator NtrC compare
MPMX20_00230 -4.0 -9.8 Homoserine O-succinyltransferase compare
MPMX20_03356 -4.0 -14.5 Polyphosphate kinase compare
MPMX20_00767 -3.9 -11.5 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_00712 -3.9 -12.8 Threonine synthase compare
MPMX20_02512 -3.9 -12.0 Tryptophan biosynthesis protein TrpCF compare
MPMX20_04520 -3.9 -12.6 Argininosuccinate lyase compare
MPMX20_04559 -3.8 -5.2 Superoxide dismutase [Mn] compare
MPMX20_04496 -3.8 -8.9 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_00927 -3.8 -13.1 Glutamate 5-kinase compare
MPMX20_04601 -3.8 -2.6 DNA polymerase I compare
MPMX20_03001 -3.8 -13.8 ATP phosphoribosyltransferase compare
MPMX20_00710 -3.8 -17.3 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_03090 -3.8 -1.8 Methionine--tRNA ligase compare
MPMX20_01028 -3.7 -2.5 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04162 -3.7 -5.6 3-dehydroquinate dehydratase compare
MPMX20_04278 -3.6 -5.4 3-dehydroquinate synthase compare
MPMX20_01596 -3.6 -22.7 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_01030 -3.5 -10.6 Lon protease compare
MPMX20_04126 -3.4 -16.9 Glutamate synthase [NADPH] large chain compare
MPMX20_01029 -3.4 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_00226 -3.4 -12.5 Bifunctional purine biosynthesis protein PurH compare
MPMX20_00544 -3.3 -6.9 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_00976 -3.3 -5.5 Pyrroline-5-carboxylate reductase compare
MPMX20_00093 -3.3 -10.2 Orotate phosphoribosyltransferase compare
MPMX20_02766 -3.3 -5.0 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_03003 -3.3 -8.0 Histidinol-phosphate aminotransferase compare
MPMX20_04595 -3.3 -2.3 Glutamine synthetase compare
MPMX20_04524 -3.3 -13.8 Phosphoenolpyruvate carboxylase compare
MPMX20_03653 -3.3 -11.2 GTP pyrophosphokinase compare
MPMX20_04127 -3.2 -10.9 Glutamate synthase [NADPH] small chain compare
MPMX20_03005 -3.2 -8.5 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_01741 -3.2 -7.4 Dihydroorotase compare
MPMX20_03498 -3.2 -3.7 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_01382 -3.2 -2.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_04498 -3.1 -9.6 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_04141 -3.1 -7.0 Arginine repressor compare
MPMX20_03683 -3.1 -2.1 RecBCD enzyme subunit RecB compare
MPMX20_01366 -3.1 -4.9 Tol-Pal system protein TolQ compare
MPMX20_03706 -3.1 -7.9 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX20_01549 -3.1 -5.4 ATP-binding/permease protein CydD compare
MPMX20_03354 -3.1 -8.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_01098 -3.0 -6.4 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_01043 -3.0 -11.3 Ammonia channel compare
MPMX20_04531 -3.0 -11.0 Cystathionine gamma-synthase compare
MPMX20_00721 -3.0 -3.5 Chaperone protein DnaJ compare
MPMX20_01368 -3.0 -5.1 hypothetical protein compare
MPMX20_00225 -3.0 -10.1 Phosphoribosylamine--glycine ligase compare
MPMX20_00769 -2.9 -10.1 2-isopropylmalate synthase compare
MPMX20_02635 -2.9 -3.8 Release factor glutamine methyltransferase compare
MPMX20_04465 -2.9 -6.7 Tyrosine recombinase XerC compare
MPMX20_03685 -2.9 -3.9 RecBCD enzyme subunit RecC compare
MPMX20_02591 -2.8 -5.6 DNA-binding protein H-NS compare
MPMX20_03852 -2.8 -11.8 Cystathionine beta-lyase MetC compare
MPMX20_02344 -2.8 -3.0 hypothetical protein compare
MPMX20_01446 -2.7 -3.7 Small protein MntS compare
MPMX20_01097 -2.7 -6.3 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_03247 -2.7 -5.7 Amidophosphoribosyltransferase compare
MPMX20_02696 -2.6 -7.6 Murein tetrapeptide carboxypeptidase compare
MPMX20_01369 -2.5 -7.0 Tol-Pal system protein TolB compare
MPMX20_03318 -2.5 -4.7 Dye-decolorizing peroxidase YfeX compare
MPMX20_01370 -2.4 -5.1 Peptidoglycan-associated lipoprotein compare
MPMX20_04275 -2.4 -3.2 Ribulose-phosphate 3-epimerase compare
MPMX20_01552 -2.4 -5.0 hypothetical protein compare
MPMX20_04570 -2.4 -7.3 HTH-type transcriptional regulator SutR compare
MPMX20_01901 -2.4 -3.2 Integration host factor subunit alpha compare
MPMX20_03008 -2.3 -4.9 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03382 -2.3 -3.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_04194 -2.3 -2.1 Peptide deformylase compare
MPMX20_02574 -2.3 -3.6 putative intracellular septation protein A compare
MPMX20_00272 -2.3 -10.0 Aromatic-amino-acid aminotransferase compare
MPMX20_00548 -2.3 -10.2 Carbamate kinase 1 compare
MPMX20_02768 -2.3 -3.2 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_00570 -2.2 -13.5 putative BsuMI modification methylase subunit YdiO compare
MPMX20_03310 -2.2 -6.0 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_01031 -2.0 -2.8 DNA-binding protein HU-beta compare
MPMX20_02826 -2.0 -2.7 Cold shock-like protein CspB compare
MPMX20_00087 -2.0 -2.5 DNA-directed RNA polymerase subunit omega compare
MPMX20_04301 -2.0 -3.0 Fe/S biogenesis protein NfuA compare
MPMX20_03285 -2.0 -1.5 hypothetical protein compare
MPMX20_04276 -1.9 -5.2 DNA adenine methylase compare
MPMX20_00102 -1.9 -3.1 hypothetical protein compare
MPMX20_02755 -1.9 -4.1 KHG/KDPG aldolase compare
MPMX20_04111 -1.9 -4.7 RNase adapter protein RapZ compare
MPMX20_01969 -1.8 -4.8 Carbonic anhydrase 1 compare
MPMX20_00031 -1.8 -8.7 Acetolactate synthase isozyme 1 large subunit compare
MPMX20_01570 -1.8 -2.6 Integration host factor subunit beta compare
MPMX20_00812 -1.8 -6.9 Aconitate hydratase B compare
MPMX20_02593 -1.8 -11.3 Regulator of RpoS compare
MPMX20_01866 -1.8 -3.4 Arginine N-succinyltransferase compare
MPMX20_03923 -1.7 -3.6 hypothetical protein compare
MPMX20_03753 -1.7 -5.8 Tyrosine recombinase XerD compare
MPMX20_04650 -1.7 -4.3 tRNA modification GTPase MnmE compare
MPMX20_00745 -1.7 -4.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_01355 -1.7 -1.2 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_01739 -1.7 -10.0 Biofilm regulator BssS compare
MPMX20_01984 -1.7 -1.6 Ribonuclease T compare
MPMX20_00547 -1.7 -6.4 Ornithine carbamoyltransferase compare
MPMX20_00032 -1.6 -4.7 Acetolactate synthase isozyme 1 small subunit compare
MPMX20_00807 -1.6 -3.5 Pyruvate dehydrogenase E1 component compare
MPMX20_04670 -1.6 -2.0 hypothetical protein compare
MPMX20_01548 -1.6 -3.9 putative ABC transporter ATP-binding/permease protein compare
MPMX20_03660 -1.6 -4.4 hypothetical protein compare
MPMX20_01867 -1.6 -6.3 N-succinylglutamate 5-semialdehyde dehydrogenase compare
MPMX20_04110 -1.6 -3.7 Nitrogen regulatory protein compare
MPMX20_01286 -1.6 -1.5 Sec-independent protein translocase protein TatE compare
MPMX20_01868 -1.6 -7.7 N-succinylarginine dihydrolase compare
MPMX20_02596 -1.5 -7.3 Formyltetrahydrofolate deformylase compare
MPMX20_04552 -1.5 -4.0 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_03043 -1.5 -4.8 Low molecular weight protein-tyrosine-phosphatase Wzb compare
MPMX20_04466 -1.4 -3.4 hypothetical protein compare
MPMX20_03028 -1.4 -8.0 Lipopolysaccharide biosynthesis protein WzxC compare
MPMX20_03036 -1.4 -3.8 Putative acetyltransferase compare
MPMX20_02770 -1.4 -3.0 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_01586 -1.4 -5.5 Aspartate aminotransferase compare
MPMX20_03629 -1.4 -2.8 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_04685 -1.4 -4.0 hypothetical protein compare
MPMX20_03042 -1.4 -8.3 Tyrosine-protein kinase wzc compare
MPMX20_04504 -1.3 -2.3 hypothetical protein compare
MPMX20_04467 -1.3 -5.0 Diaminopimelate epimerase compare
MPMX20_03479 -1.3 -1.9 30S ribosomal protein S16 compare
MPMX20_04279 -1.3 -2.2 Shikimate kinase 1 compare
MPMX20_00739 -1.3 -3.8 Carbamoyl-phosphate synthase small chain compare
MPMX20_02993 -1.3 -3.7 hypothetical protein compare
MPMX20_02549 -1.3 -2.9 hypothetical protein compare
MPMX20_01942 -1.3 -4.0 HTH-type transcriptional repressor BluR compare
MPMX20_02710 -1.3 -4.6 Ribonuclease D compare
MPMX20_01768 -1.2 -2.0 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_03226 -1.2 -3.3 Acetate kinase compare
MPMX20_02542 -1.2 -2.5 HTH-type transcriptional activator RhaR compare
MPMX20_01014 -1.2 -6.2 tRNA sulfurtransferase compare
MPMX20_03234 -1.2 -2.5 putative Nudix hydrolase YfcD compare
MPMX20_00084 -1.2 -6.6 ATP-dependent DNA helicase RecG compare
MPMX20_04505 -1.2 -5.6 HTH-type transcriptional regulator HdfR compare
MPMX20_02282 -1.2 -5.4 Sensor histidine kinase RcsC compare
MPMX20_04140 -1.2 -5.7 Malate dehydrogenase compare
MPMX20_03580 -1.2 -3.6 Protein RecA compare
MPMX20_03022 -1.2 -2.9 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03241 -1.2 -4.3 Histidine transport ATP-binding protein HisP compare
MPMX20_03641 -1.2 -4.8 Phosphoadenosine phosphosulfate reductase compare
MPMX20_00825 -1.2 -1.1 Aspartate 1-decarboxylase compare
MPMX20_01865 -1.1 -5.9 Succinylornithine transaminase compare
MPMX20_01068 -1.1 -2.5 hypothetical protein compare
MPMX20_02698 -1.1 -4.3 Alanine racemase, catabolic compare
MPMX20_03037 -1.1 -4.3 hypothetical protein compare
MPMX20_01765 -1.1 -2.7 Ribonuclease E compare
MPMX20_01361 -1.1 -3.7 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_03154 -1.1 -5.6 Inner membrane protein YejM compare
MPMX20_01673 -1.1 -5.6 N-carbamoyl-L-amino acid hydrolase compare
MPMX20_04529 -1.1 -2.9 5,10-methylenetetrahydrofolate reductase compare
MPMX20_02672 -1.1 -8.4 hypothetical protein compare
MPMX20_03038 -1.0 -7.3 hypothetical protein compare
MPMX20_02983 -1.0 -5.8 HTH-type transcriptional regulator ArgP compare
MPMX20_03026 -1.0 -5.3 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase GtfA subunit compare
MPMX20_02737 -1.0 -6.8 Tail-specific protease compare
MPMX20_04066 -1.0 -1.1 ATP-dependent RNA helicase DeaD compare
MPMX20_03218 -1.0 -2.3 NAD(P)H-quinone oxidoreductase subunit 3 compare
MPMX20_04686 -1.0 -3.2 Phospholipase D compare
MPMX20_00234 -1.0 -3.8 Transcriptional repressor IclR compare
MPMX20_02767 -1.0 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_04502 -1.0 -6.0 Acetolactate synthase isozyme 2 large subunit compare
MPMX20_03267 -1.0 -2.4 Phosphohistidine phosphatase SixA compare
MPMX20_01851 -1.0 -2.3 Putative NAD(P)H nitroreductase YdjA compare
MPMX20_00542 -0.9 -2.8 2-iminobutanoate/2-iminopropanoate deaminase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Citrulline in Enterobacter sp. TBS_079

For nitrogen source L-Citrulline across organisms