Experiment set10S406 for Enterobacter sp. TBS_079

Compare to:

D-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
MPMX20_03681 -6.4 -4.4 Amino-acid acetyltransferase compare
MPMX20_00927 -6.2 -8.5 Glutamate 5-kinase compare
MPMX20_00831 -6.2 -4.3 RNA polymerase-binding transcription factor DksA compare
MPMX20_00693 -6.0 -5.9 Phosphoserine phosphatase compare
MPMX20_03008 -5.9 -5.8 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_00766 -5.9 -4.1 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_03003 -5.9 -5.7 Histidinol-phosphate aminotransferase compare
MPMX20_00710 -5.8 -8.0 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_00230 -5.8 -4.0 Homoserine O-succinyltransferase compare
MPMX20_01566 -5.8 -11.8 Phosphoserine aminotransferase compare
MPMX20_00556 -5.8 -5.7 Ornithine carbamoyltransferase subunit F compare
MPMX20_00768 -5.8 -8.0 3-isopropylmalate dehydrogenase compare
MPMX20_04127 -5.8 -8.8 Glutamate synthase [NADPH] small chain compare
MPMX20_03338 -5.7 -3.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_02510 -5.6 -10.8 Anthranilate synthase component 1 compare
MPMX20_00767 -5.6 -5.5 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_04499 -5.6 -7.7 Dihydroxy-acid dehydratase compare
MPMX20_03004 -5.6 -6.7 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_03001 -5.6 -7.7 ATP phosphoribosyltransferase compare
MPMX20_03006 -5.6 -6.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_02511 -5.6 -8.5 Bifunctional protein TrpGD compare
MPMX20_04497 -5.6 -5.4 HTH-type transcriptional regulator GltC compare
MPMX20_00928 -5.5 -6.6 Gamma-glutamyl phosphate reductase compare
MPMX20_00712 -5.5 -5.4 Threonine synthase compare
MPMX20_04523 -5.5 -3.8 Acetylornithine deacetylase compare
MPMX20_02512 -5.5 -6.6 Tryptophan biosynthesis protein TrpCF compare
MPMX20_03705 -5.4 -3.8 Diaminopimelate decarboxylase compare
MPMX20_03771 -5.4 -10.4 D-3-phosphoglycerate dehydrogenase compare
MPMX20_03264 -5.4 -3.7 Chorismate synthase compare
MPMX20_04126 -5.4 -15.6 Glutamate synthase [NADPH] large chain compare
MPMX20_00711 -5.4 -7.4 Homoserine kinase compare
MPMX20_02514 -5.4 -5.2 Tryptophan synthase alpha chain compare
MPMX20_03466 -5.3 -7.3 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_04521 -5.3 -5.2 Acetylglutamate kinase compare
MPMX20_03007 -5.3 -6.3 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_01098 -5.2 -5.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_04531 -5.2 -7.1 Cystathionine gamma-synthase compare
MPMX20_04077 -5.2 -8.0 Argininosuccinate synthase compare
MPMX20_01551 -5.2 -5.0 Leucine-responsive regulatory protein compare
MPMX20_03002 -5.1 -11.8 Histidinol dehydrogenase compare
MPMX20_02513 -5.0 -10.2 Tryptophan synthase beta chain compare
MPMX20_04498 -5.0 -7.7 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_04522 -5.0 -4.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_01354 -5.0 -3.4 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_03468 -4.9 -6.8 T-protein compare
MPMX20_00544 -4.9 -6.8 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_04597 -4.9 -5.9 DNA-binding transcriptional regulator NtrC compare
MPMX20_01349 -4.9 -3.4 Citrate synthase compare
MPMX20_03247 -4.9 -8.1 Amidophosphoribosyltransferase compare
MPMX20_04496 -4.9 -3.4 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_03005 -4.8 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_00225 -4.7 -9.1 Phosphoribosylamine--glycine ligase compare
MPMX20_03852 -4.7 -12.2 Cystathionine beta-lyase MetC compare
MPMX20_02494 -4.7 -6.4 Orotidine 5'-phosphate decarboxylase compare
MPMX20_00740 -4.7 -6.4 Carbamoyl-phosphate synthase large chain compare
MPMX20_01355 -4.6 -1.8 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_04520 -4.6 -7.7 Argininosuccinate lyase compare
MPMX20_00226 -4.5 -8.7 Bifunctional purine biosynthesis protein PurH compare
MPMX20_01596 -4.5 -15.8 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_03426 -4.4 -15.4 Phosphoribosylformylglycinamidine synthase compare
MPMX20_01030 -4.4 -6.8 Lon protease compare
MPMX20_04524 -4.4 -13.1 Phosphoenolpyruvate carboxylase compare
MPMX20_01741 -4.4 -4.3 Dihydroorotase compare
MPMX20_00739 -4.4 -3.0 Carbamoyl-phosphate synthase small chain compare
MPMX20_01567 -4.3 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_02699 -4.3 -10.3 D-amino acid dehydrogenase conserved
MPMX20_01320 -4.3 -12.8 Asparagine synthetase B [glutamine-hydrolyzing] compare
MPMX20_04596 -4.3 -9.1 Sensory histidine kinase/phosphatase NtrB compare
MPMX20_00976 -4.2 -2.9 Pyrroline-5-carboxylate reductase compare
MPMX20_03653 -4.2 -13.1 GTP pyrophosphokinase compare
MPMX20_01367 -4.1 -7.9 Tol-Pal system protein TolR compare
MPMX20_03354 -4.1 -9.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_04189 -4.1 -4.0 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_01570 -4.0 -3.8 Integration host factor subunit beta compare
MPMX20_04162 -4.0 -3.9 3-dehydroquinate dehydratase compare
MPMX20_03409 -3.9 -2.7 Iron-binding protein IscA compare
MPMX20_03706 -3.9 -9.5 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX20_01097 -3.9 -7.9 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_04319 -3.9 -10.1 HTH-type transcriptional regulator GntR compare
MPMX20_00093 -3.8 -6.9 Orotate phosphoribosyltransferase compare
MPMX20_01369 -3.8 -10.1 Tol-Pal system protein TolB compare
MPMX20_01366 -3.8 -6.8 Tol-Pal system protein TolQ compare
MPMX20_04279 -3.8 -3.6 Shikimate kinase 1 compare
MPMX20_00769 -3.7 -11.5 2-isopropylmalate synthase compare
MPMX20_03090 -3.6 -1.9 Methionine--tRNA ligase compare
MPMX20_04552 -3.5 -5.9 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_04278 -3.3 -4.0 3-dehydroquinate synthase compare
MPMX20_03408 -3.3 -2.3 Co-chaperone protein HscB compare
MPMX20_01368 -3.3 -5.1 hypothetical protein compare
MPMX20_01286 -3.2 -2.5 Sec-independent protein translocase protein TatE compare
MPMX20_04275 -3.1 -2.2 Ribulose-phosphate 3-epimerase compare
MPMX20_01548 -3.0 -6.0 putative ABC transporter ATP-binding/permease protein compare
MPMX20_03356 -2.9 -12.5 Polyphosphate kinase compare
MPMX20_03407 -2.9 -3.4 Chaperone protein HscA compare
MPMX20_02768 -2.9 -3.8 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_04595 -2.8 -1.9 Glutamine synthetase compare
MPMX20_02766 -2.8 -4.6 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_01382 -2.8 -1.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_01370 -2.7 -4.1 Peptidoglycan-associated lipoprotein compare
MPMX20_01043 -2.7 -11.2 Ammonia channel compare
MPMX20_03685 -2.6 -3.0 RecBCD enzyme subunit RecC compare
MPMX20_02770 -2.5 -4.8 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_04119 -2.5 -2.4 DNA polymerase III subunit chi compare
MPMX20_00030 -2.5 -3.1 hypothetical protein compare
MPMX20_03435 -2.4 -2.1 Pyridoxine 5'-phosphate synthase compare
MPMX20_02696 -2.4 -8.8 Murein tetrapeptide carboxypeptidase compare
MPMX20_01028 -2.4 -2.8 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_03382 -2.4 -2.3 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_02755 -2.3 -5.1 KHG/KDPG aldolase compare
MPMX20_04624 -2.3 -6.9 Regulatory protein AsnC compare
MPMX20_00807 -2.2 -2.2 Pyruvate dehydrogenase E1 component compare
MPMX20_00086 -2.2 -4.2 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_03318 -2.2 -6.6 Dye-decolorizing peroxidase YfeX compare
MPMX20_04029 -2.1 -2.5 Cyclic dipyrimidine nucleotide synthase compare
MPMX20_00388 -2.1 -1.1 hypothetical protein compare
MPMX20_01549 -2.1 -4.0 ATP-binding/permease protein CydD compare
MPMX20_04504 -2.1 -3.8 hypothetical protein compare
MPMX20_01750 -2.1 -7.1 Negative regulator of flagellin synthesis compare
MPMX20_02574 -2.1 -3.5 putative intracellular septation protein A compare
MPMX20_04642 -2.1 -2.4 Phosphate import ATP-binding protein PstB compare
MPMX20_02767 -2.0 -3.5 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_03683 -1.9 -3.9 RecBCD enzyme subunit RecB compare
MPMX20_01950 -1.9 -3.0 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_03806 -1.9 -3.5 hypothetical protein compare
MPMX20_02997 -1.9 -8.8 Exodeoxyribonuclease I compare
MPMX20_04465 -1.9 -5.0 Tyrosine recombinase XerC compare
MPMX20_04626 -1.9 -3.6 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_01552 -1.8 -4.3 hypothetical protein compare
MPMX20_04505 -1.7 -6.0 HTH-type transcriptional regulator HdfR compare
MPMX20_02769 -1.7 -2.3 putative transcriptional regulatory protein YebC compare
MPMX20_00812 -1.7 -6.1 Aconitate hydratase B compare
MPMX20_01005 -1.7 -2.8 Transcriptional repressor NrdR compare
MPMX20_04559 -1.6 -2.1 Superoxide dismutase [Mn] compare
MPMX20_03780 -1.6 -3.6 Transketolase 1 compare
MPMX20_00720 -1.6 -1.3 Chaperone protein DnaK compare
MPMX20_03177 -1.6 -5.1 Transcriptional regulatory protein RcsB compare
MPMX20_00087 -1.6 -2.2 DNA-directed RNA polymerase subunit omega compare
MPMX20_03047 -1.6 -4.0 dCTP deaminase compare
MPMX20_00626 -1.5 -1.5 hypothetical protein compare
MPMX20_04601 -1.5 -2.3 DNA polymerase I compare
MPMX20_04650 -1.5 -3.4 tRNA modification GTPase MnmE compare
MPMX20_00876 -1.5 -3.2 Peptidyl-tRNA hydrolase ArfB compare
MPMX20_04170 -1.5 -1.7 DNA-binding protein Fis compare
MPMX20_02645 -1.5 -5.3 Ribosome-binding ATPase YchF compare
MPMX20_01361 -1.5 -5.3 Cytochrome bd-I ubiquinol oxidase subunit 1 compare
MPMX20_04466 -1.4 -2.7 hypothetical protein compare
MPMX20_04140 -1.4 -5.5 Malate dehydrogenase compare
MPMX20_02812 -1.4 -2.9 hypothetical protein compare
MPMX20_04502 -1.4 -7.7 Acetolactate synthase isozyme 2 large subunit compare
MPMX20_03096 -1.4 -3.0 Glycine betaine uptake system permease protein YehW compare
MPMX20_00793 -1.4 -1.8 DNA gyrase inhibitor YacG compare
MPMX20_03509 -1.4 -1.4 hypothetical protein compare
MPMX20_00745 -1.3 -3.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_03163 -1.3 -1.2 hypothetical protein compare
MPMX20_02372 -1.3 -2.4 HTH-type transcriptional repressor NsrR compare
MPMX20_01906 -1.3 -7.7 Anti-FlhC(2)FlhD(4) factor YdiV compare
MPMX20_03923 -1.3 -2.5 hypothetical protein compare
MPMX20_03580 -1.3 -4.2 Protein RecA compare
MPMX20_01351 -1.3 -2.3 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_03753 -1.3 -4.4 Tyrosine recombinase XerD compare
MPMX20_03864 -1.3 -4.8 Sensor protein QseC compare
MPMX20_01362 -1.3 -3.2 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_02732 -1.3 -2.5 PhoP/PhoQ regulator MgrB compare
MPMX20_03660 -1.3 -3.6 hypothetical protein compare
MPMX20_03812 -1.2 -4.1 dITP/XTP pyrophosphatase compare
MPMX20_03629 -1.2 -2.3 Protein-L-isoaspartate O-methyltransferase compare
MPMX20_04467 -1.2 -3.3 Diaminopimelate epimerase compare
MPMX20_02957 -1.2 -8.5 DNA-cytosine methyltransferase compare
MPMX20_04110 -1.2 -2.6 Nitrogen regulatory protein compare
MPMX20_02309 -1.2 -3.6 hypothetical protein compare
MPMX20_00453 -1.1 -1.3 RNA-binding protein Hfq compare
MPMX20_04306 -1.1 -4.1 Glycerol-3-phosphate regulon repressor compare
MPMX20_03479 -1.1 -1.8 30S ribosomal protein S16 compare
MPMX20_01974 -1.1 -1.6 Riboflavin synthase compare
MPMX20_04640 -1.1 -1.9 Phosphate transport system permease protein PstC compare
MPMX20_04501 -1.1 -2.6 Acetolactate synthase isozyme 2 small subunit compare
MPMX20_04443 -1.1 -2.3 Sec-independent protein translocase protein TatB compare
MPMX20_01972 -1.1 -0.9 tRNA-Val compare
MPMX20_04393 -1.1 -3.6 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_01851 -1.1 -3.1 Putative NAD(P)H nitroreductase YdjA compare
MPMX20_03571 -1.1 -1.3 tRNA-Arg compare
MPMX20_02993 -1.1 -2.5 hypothetical protein compare
MPMX20_00801 -1.1 -1.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
MPMX20_03440 -1.1 -2.9 Elongation factor 4 compare
MPMX20_00031 -1.1 -5.8 Acetolactate synthase isozyme 1 large subunit compare
MPMX20_01765 -1.0 -2.4 Ribonuclease E compare
MPMX20_03310 -1.0 -2.8 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_00773 -1.0 -5.8 Catabolite repressor/activator compare
MPMX20_00721 -1.0 -1.6 Chaperone protein DnaJ compare
MPMX20_03227 -1.0 -3.3 Phosphate acetyltransferase compare
MPMX20_01275 -1.0 -1.5 hypothetical protein compare
MPMX20_03469 -1.0 -4.3 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive compare
MPMX20_01029 -1.0 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_03819 -1.0 -2.0 putative Fe(2+)-trafficking protein compare
MPMX20_04452 -1.0 -4.1 HTH-type transcriptional regulator MetR compare
MPMX20_04570 -1.0 -4.3 HTH-type transcriptional regulator SutR compare
MPMX20_01364 -1.0 -3.1 hypothetical protein compare
MPMX20_04673 -1.0 -6.4 hypothetical protein compare
MPMX20_01381 -1.0 -2.2 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive compare
MPMX20_04444 -1.0 -1.2 Sec-independent protein translocase protein TatA compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source D-Alanine in Enterobacter sp. TBS_079

For nitrogen source D-Alanine across organisms