Experiment set10S252 for Phocaeicola vulgatus CL09T03C04

Compare to:

L-Glutamine nitrogen source; Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -6.8 -4.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09675 -6.0 -6.0 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS08640 -5.8 -3.7 acetylornithine carbamoyltransferase compare
HMPREF1058_RS14545 -5.5 -10.5 2-isopropylmalate synthase compare
HMPREF1058_RS15875 -5.5 -8.3 histidinol dehydrogenase compare
HMPREF1058_RS12115 -5.4 -11.6 acetylglutamate kinase compare
HMPREF1058_RS07200 -5.3 -10.2 tryptophan synthase subunit alpha compare
HMPREF1058_RS14785 -5.3 -8.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS06165 -5.3 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS17885 -5.2 -13.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS08840 -5.2 -11.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS15075 -5.2 -9.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS11730 -5.1 -3.5 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS12780 -5.1 -11.8 M20 family metallo-hydrolase compare
HMPREF1058_RS10975 -5.1 -10.8 serine acetyltransferase compare
HMPREF1058_RS08850 -5.0 -12.4 N-acetyltransferase compare
HMPREF1058_RS08845 -5.0 -10.6 argininosuccinate synthase compare
HMPREF1058_RS13795 -4.9 -8.2 DUF4954 family protein compare
HMPREF1058_RS15885 -4.9 -9.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS09585 -4.7 -18.8 argininosuccinate lyase compare
HMPREF1058_RS15870 -4.7 -10.9 ATP phosphoribosyltransferase compare
HMPREF1058_RS07190 -4.7 -7.8 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS07185 -4.7 -13.1 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS03000 -4.6 -9.8 IMP dehydrogenase compare
HMPREF1058_RS12105 -4.6 -7.8 shikimate kinase compare
HMPREF1058_RS07170 -4.6 -11.0 tryptophan synthase subunit beta compare
HMPREF1058_RS16730 -4.5 -4.4 chorismate synthase compare
HMPREF1058_RS06170 -4.5 -7.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS08025 -4.5 -7.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS17940 -4.5 -8.0 alpha-amylase compare
HMPREF1058_RS14790 -4.5 -14.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14610 -4.4 -17.5 adenylosuccinate synthase compare
HMPREF1058_RS14770 -4.4 -9.3 prephenate dehydrogenase compare
HMPREF1058_RS08645 -4.4 -12.9 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14720 -4.3 -18.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS14565 -4.3 -15.6 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS14730 -4.2 -10.2 threonine synthase compare
HMPREF1058_RS14550 -4.1 -13.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS17935 -4.1 -10.9 glycosyltransferase compare
HMPREF1058_RS02875 -4.0 -8.6 cysteine synthase A compare
HMPREF1058_RS14725 -4.0 -12.0 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS04300 -4.0 -3.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS15880 -4.0 -11.2 histidinol-phosphate transaminase compare
HMPREF1058_RS04295 -4.0 -4.7 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS06345 -4.0 -7.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06180 -3.9 -7.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS14795 -3.9 -8.3 prephenate dehydratase compare
HMPREF1058_RS07955 -3.9 -16.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS16815 -3.9 -14.1 dihydroxy-acid dehydratase compare
HMPREF1058_RS03910 -3.9 -9.0 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS16820 -3.9 -10.8 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS08830 -3.9 -10.8 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS16835 -3.8 -8.4 ketol-acid reductoisomerase compare
HMPREF1058_RS06190 -3.8 -7.6 aspartate kinase compare
HMPREF1058_RS08650 -3.8 -10.0 glutamate 5-kinase compare
HMPREF1058_RS03970 -3.8 -2.6 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS10995 -3.8 -10.2 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS02135 -3.7 -17.3 phosphoenolpyruvate synthase compare
HMPREF1058_RS04375 -3.7 -9.2 carbon-nitrogen hydrolase compare
HMPREF1058_RS02220 -3.7 -5.0 branched-chain amino acid aminotransferase compare
HMPREF1058_RS16825 -3.7 -11.7 acetolactate synthase small subunit compare
HMPREF1058_RS07180 -3.6 -6.5 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS07175 -3.6 -11.7 anthranilate synthase component I family protein compare
HMPREF1058_RS16760 -3.6 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS16750 -3.6 -2.5 shikimate dehydrogenase compare
HMPREF1058_RS06175 -3.5 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS07195 -3.5 -4.7 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS15665 -3.5 -8.3 MFS transporter compare
HMPREF1058_RS02755 -3.5 -2.4 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS06195 -3.4 -6.4 diaminopimelate decarboxylase compare
HMPREF1058_RS02750 -3.3 -3.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06340 -3.3 -5.0 electron transport complex subunit RsxC compare
HMPREF1058_RS04065 -3.3 -2.2 VWA domain-containing protein compare
HMPREF1058_RS14560 -3.3 -12.9 2-isopropylmalate synthase compare
HMPREF1058_RS15395 -3.3 -2.2 dihydroorotase compare
HMPREF1058_RS13970 -3.3 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS02405 -3.3 -18.0 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS08855 -3.2 -6.9 arginine repressor compare
HMPREF1058_RS02170 -3.2 -7.9 hypothetical protein compare
HMPREF1058_RS03800 -3.1 -10.6 serine hydroxymethyltransferase compare
HMPREF1058_RS16490 -3.1 -12.9 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS06335 -3.1 -7.4 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS02410 -3.1 -18.2 methylmalonyl-CoA mutase compare
HMPREF1058_RS03075 -3.1 -4.2 DNA helicase RecQ compare
HMPREF1058_RS06325 -3.1 -3.6 electron transport complex subunit E compare
HMPREF1058_RS16510 -3.1 -4.1 methylmalonyl-CoA epimerase compare
HMPREF1058_RS16500 -3.0 -3.5 OadG family protein compare
HMPREF1058_RS06320 -3.0 -7.7 electron transport complex subunit RsxA compare
HMPREF1058_RS06225 -3.0 -2.1 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS01650 -3.0 -5.9 hypothetical protein compare
HMPREF1058_RS14555 -2.9 -3.4 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS14005 -2.9 -2.0 3-dehydroquinate synthase compare
HMPREF1058_RS14125 -2.8 -16.8 magnesium transporter compare
HMPREF1058_RS04070 -2.8 -1.9 hypothetical protein compare
HMPREF1058_RS02115 -2.8 -13.2 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS03535 -2.8 -1.9 UvrD-helicase domain-containing protein compare
HMPREF1058_RS10255 -2.7 -3.6 hypothetical protein compare
HMPREF1058_RS14490 -2.6 -12.4 S9 family peptidase compare
HMPREF1058_RS17930 -2.6 -12.3 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS10080 -2.5 -15.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS02885 -2.5 -13.1 response regulator transcription factor compare
HMPREF1058_RS18265 -2.5 -2.4 aspartate 1-decarboxylase compare
HMPREF1058_RS03085 -2.5 -1.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS10075 -2.4 -14.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS04075 -2.4 -1.7 DUF58 domain-containing protein compare
HMPREF1058_RS12110 -2.4 -9.7 biosynthetic arginine decarboxylase compare
HMPREF1058_RS16495 -2.4 -2.3 biotin/lipoyl-binding protein compare
HMPREF1058_RS04080 -2.4 -2.3 AAA family ATPase compare
HMPREF1058_RS00700 -2.3 -8.7 DUF4831 family protein compare
HMPREF1058_RS16505 -2.3 -5.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS05145 -2.3 -6.4 ATP-binding protein compare
HMPREF1058_RS11205 -2.3 -1.5 radical SAM protein compare
HMPREF1058_RS14200 -2.3 -13.2 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS15460 -2.3 -7.1 amidohydrolase compare
HMPREF1058_RS10720 -2.2 -8.6 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS09610 -2.2 -7.8 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS05780 -2.2 -9.0 PD40 domain-containing protein compare
HMPREF1058_RS13350 -2.2 -11.3 Trk system potassium transporter TrkA compare
HMPREF1058_RS17155 -2.1 -3.2 dCMP deaminase family protein compare
HMPREF1058_RS06350 -2.1 -5.4 SoxR reducing system RseC family protein compare
HMPREF1058_RS15975 -2.1 -8.4 saccharopine dehydrogenase family protein compare
HMPREF1058_RS17060 -2.1 -7.8 HAD family hydrolase compare
HMPREF1058_RS13635 -2.1 -4.0 gliding motility lipoprotein GldH compare
HMPREF1058_RS10820 -2.1 -14.0 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS06040 -2.0 -6.8 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS05140 -2.0 -2.3 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS00590 -1.9 -4.0 hypothetical protein compare
HMPREF1058_RS06875 -1.9 -6.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS04045 -1.9 -4.2 tetratricopeptide repeat protein compare
HMPREF1058_RS06330 -1.9 -3.6 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS11890 -1.9 -4.2 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS08835 -1.9 -8.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS11745 -1.9 -4.6 WbqC family protein compare
HMPREF1058_RS10270 -1.8 -4.0 hypothetical protein compare
HMPREF1058_RS15895 -1.8 -3.8 transcriptional repressor compare
HMPREF1058_RS15435 -1.8 -8.0 hypothetical protein compare
HMPREF1058_RS10970 -1.8 -8.1 ribonuclease R compare
HMPREF1058_RS08325 -1.8 -6.0 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS11535 -1.8 -6.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS17040 -1.8 -5.1 NTP transferase domain-containing protein compare
HMPREF1058_RS04050 -1.8 -2.1 protein BatD compare
HMPREF1058_RS09445 -1.7 -1.9 tyrosine-type recombinase/integrase compare
HMPREF1058_RS09685 -1.7 -10.3 tetratricopeptide repeat protein compare
HMPREF1058_RS06870 -1.7 -12.2 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS02800 -1.7 -6.3 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS14605 -1.7 -5.0 transcriptional repressor compare
HMPREF1058_RS14505 -1.6 -4.2 mechanosensitive ion channel compare
HMPREF1058_RS15520 -1.6 -2.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS11040 -1.6 -5.2 polysaccharide deacetylase family protein compare
HMPREF1058_RS10955 -1.5 -5.6 phosphatase PAP2 family protein compare
HMPREF1058_RS14590 -1.5 -1.0 AraC family transcriptional regulator compare
HMPREF1058_RS17815 -1.5 -5.4 MFS transporter compare
HMPREF1058_RS16845 -1.5 -4.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS13790 -1.5 -7.9 GTPase HflX compare
HMPREF1058_RS17050 -1.5 -7.1 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS10290 -1.5 -3.9 hypothetical protein compare
HMPREF1058_RS02110 -1.5 -9.3 NADP-dependent malic enzyme compare
HMPREF1058_RS04995 -1.5 -8.6 putative sulfate exporter family transporter compare
HMPREF1058_RS14830 -1.5 -3.6 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS16690 -1.5 -5.6 NTP transferase domain-containing protein compare
HMPREF1058_RS07440 -1.5 -6.7 aspartate--ammonia ligase compare
HMPREF1058_RS00565 -1.5 -7.7 hemolysin III family protein compare
HMPREF1058_RS15660 -1.5 -9.8 galactokinase compare
HMPREF1058_RS05930 -1.5 -7.6 MFS transporter compare
HMPREF1058_RS10495 -1.4 -2.6 rhomboid family intramembrane serine protease compare
HMPREF1058_RS15565 -1.4 -10.0 hypothetical protein compare
HMPREF1058_RS03310 -1.4 -6.7 carboxynorspermidine decarboxylase compare
HMPREF1058_RS06925 -1.4 -1.9 glutamate synthase subunit beta compare
HMPREF1058_RS11490 -1.4 -3.7 redox-regulated ATPase YchF compare
HMPREF1058_RS10840 -1.4 -1.9 hypothetical protein compare
HMPREF1058_RS08485 -1.4 -9.8 GNAT family N-acetyltransferase compare
HMPREF1058_RS17205 -1.4 -1.8 DUF4199 domain-containing protein compare
HMPREF1058_RS10335 -1.4 -3.8 hypothetical protein compare
HMPREF1058_RS00515 -1.3 -5.9 YicC family protein compare
HMPREF1058_RS20485 -1.3 -2.1 mobilization protein compare
HMPREF1058_RS15375 -1.3 -1.5 DUF4369 domain-containing protein compare
HMPREF1058_RS03510 -1.3 -4.9 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS07635 -1.3 -2.5 50S ribosomal protein L9 compare
HMPREF1058_RS09750 -1.3 -3.9 glycosyltransferase compare
HMPREF1058_RS06410 -1.3 -2.5 elongation factor 4 compare
HMPREF1058_RS13735 -1.3 -2.6 hypothetical protein compare
HMPREF1058_RS10295 -1.2 -2.5 hypothetical protein compare
HMPREF1058_RS09240 -1.2 -6.3 type I methionyl aminopeptidase compare
HMPREF1058_RS05755 -1.2 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS07040 -1.2 -8.4 tetratricopeptide repeat protein compare
HMPREF1058_RS06560 -1.2 -6.2 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS18680 -1.2 -4.8 F0F1 ATP synthase subunit B compare
HMPREF1058_RS17080 -1.2 -2.7 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS09745 -1.2 -5.6 glycosyltransferase compare
HMPREF1058_RS00710 -1.2 -4.8 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS12990 -1.2 -2.1 hypothetical protein compare
HMPREF1058_RS03530 -1.2 -0.8 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS17055 -1.2 -4.5 flippase-like domain-containing protein compare
HMPREF1058_RS17025 -1.2 -6.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
HMPREF1058_RS11380 -1.2 -5.4 DUF4271 domain-containing protein compare
HMPREF1058_RS07655 -1.2 -2.0 hypothetical protein compare
HMPREF1058_RS11910 -1.1 -5.9 DEAD/DEAH box helicase compare
HMPREF1058_RS12455 -1.1 -2.2 dUTP diphosphatase compare
HMPREF1058_RS17035 -1.1 -5.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS17130 -1.1 -1.9 tetratricopeptide repeat protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in nitrogen source experiments

For nitrogen source L-Glutamine across organisms