Experiment set10S247 for Phocaeicola vulgatus CL09T03C04

Compare to:

L-Serine nitrogen source; Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS08850 -5.5 -12.2 N-acetyltransferase compare
HMPREF1058_RS06165 -5.4 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS12490 -5.3 -5.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS12115 -5.3 -12.8 acetylglutamate kinase compare
HMPREF1058_RS13795 -5.2 -7.1 DUF4954 family protein compare
HMPREF1058_RS06175 -5.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS11730 -5.2 -3.5 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS03910 -5.1 -4.9 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS14565 -5.0 -14.4 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS08640 -5.0 -4.2 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07195 -5.0 -4.9 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS17940 -5.0 -6.8 alpha-amylase compare
HMPREF1058_RS10975 -4.9 -11.5 serine acetyltransferase compare
HMPREF1058_RS09585 -4.9 -18.4 argininosuccinate lyase compare
HMPREF1058_RS17935 -4.9 -8.8 glycosyltransferase compare
HMPREF1058_RS11270 -4.8 -12.1 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS14550 -4.8 -13.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS15885 -4.8 -10.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS08830 -4.8 -10.7 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS14720 -4.8 -18.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS07200 -4.8 -11.4 tryptophan synthase subunit alpha compare
HMPREF1058_RS14770 -4.7 -10.6 prephenate dehydrogenase compare
HMPREF1058_RS15875 -4.7 -11.0 histidinol dehydrogenase compare
HMPREF1058_RS15870 -4.7 -10.5 ATP phosphoribosyltransferase compare
HMPREF1058_RS14730 -4.7 -12.1 threonine synthase compare
HMPREF1058_RS12105 -4.6 -5.5 shikimate kinase compare
HMPREF1058_RS12780 -4.6 -12.3 M20 family metallo-hydrolase compare
HMPREF1058_RS08845 -4.6 -11.1 argininosuccinate synthase compare
HMPREF1058_RS15075 -4.6 -12.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS08645 -4.6 -13.4 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS02875 -4.6 -8.2 cysteine synthase A compare
HMPREF1058_RS14725 -4.5 -13.4 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14785 -4.5 -10.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS14545 -4.5 -13.5 2-isopropylmalate synthase compare
HMPREF1058_RS07185 -4.5 -13.4 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS14610 -4.4 -18.6 adenylosuccinate synthase compare
HMPREF1058_RS17885 -4.4 -16.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS07955 -4.3 -15.7 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS08650 -4.3 -12.7 glutamate 5-kinase compare
HMPREF1058_RS14555 -4.3 -2.9 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS06180 -4.3 -7.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS09675 -4.3 -6.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS16730 -4.3 -5.1 chorismate synthase compare
HMPREF1058_RS03000 -4.3 -11.3 IMP dehydrogenase compare
HMPREF1058_RS06040 -4.3 -5.8 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS14790 -4.2 -15.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS06870 -4.2 -18.4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS07190 -4.2 -7.9 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS07170 -4.1 -12.3 tryptophan synthase subunit beta compare
HMPREF1058_RS08840 -4.1 -11.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS07175 -4.0 -12.6 anthranilate synthase component I family protein compare
HMPREF1058_RS14795 -4.0 -9.1 prephenate dehydratase compare
HMPREF1058_RS10995 -3.9 -10.7 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS16820 -3.9 -11.5 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS18020 -3.9 -15.1 dicarboxylate/amino acid:cation symporter compare
HMPREF1058_RS16835 -3.9 -9.4 ketol-acid reductoisomerase compare
HMPREF1058_RS02220 -3.9 -4.6 branched-chain amino acid aminotransferase compare
HMPREF1058_RS14560 -3.9 -13.6 2-isopropylmalate synthase compare
HMPREF1058_RS06190 -3.9 -7.4 aspartate kinase compare
HMPREF1058_RS16815 -3.9 -13.7 dihydroxy-acid dehydratase compare
HMPREF1058_RS16760 -3.8 -4.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS15880 -3.8 -12.0 histidinol-phosphate transaminase compare
HMPREF1058_RS06875 -3.8 -10.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS13970 -3.8 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS06080 -3.8 -7.2 glutamine synthetase III compare
HMPREF1058_RS08025 -3.7 -8.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS06195 -3.6 -6.0 diaminopimelate decarboxylase compare
HMPREF1058_RS16410 -3.5 -13.4 L-serine ammonia-lyase compare
HMPREF1058_RS04375 -3.5 -9.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS02750 -3.5 -2.4 BamA/TamA family outer membrane protein compare
HMPREF1058_RS17130 -3.5 -2.4 tetratricopeptide repeat protein compare
HMPREF1058_RS07180 -3.5 -6.9 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS08855 -3.4 -9.9 arginine repressor compare
HMPREF1058_RS06170 -3.4 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS06890 -3.4 -8.1 glutamine synthetase III conserved
HMPREF1058_RS06880 -3.4 -16.0 amidophosphoribosyltransferase compare
HMPREF1058_RS04065 -3.4 -2.3 VWA domain-containing protein compare
HMPREF1058_RS15395 -3.3 -2.3 dihydroorotase compare
HMPREF1058_RS02135 -3.3 -14.3 phosphoenolpyruvate synthase compare
HMPREF1058_RS10720 -3.3 -10.2 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS02755 -3.3 -5.0 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS03075 -3.2 -3.8 DNA helicase RecQ compare
HMPREF1058_RS06340 -3.2 -5.3 electron transport complex subunit RsxC compare
HMPREF1058_RS06895 -3.1 -5.4 ammonium transporter compare
HMPREF1058_RS09445 -3.1 -2.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS03800 -3.1 -10.4 serine hydroxymethyltransferase compare
HMPREF1058_RS05145 -3.1 -7.0 ATP-binding protein compare
HMPREF1058_RS06225 -3.0 -2.1 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS17930 -3.0 -13.2 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS06905 -3.0 -6.6 hypothetical protein compare
HMPREF1058_RS16750 -3.0 -2.9 shikimate dehydrogenase compare
HMPREF1058_RS06335 -3.0 -8.0 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS14005 -3.0 -2.0 3-dehydroquinate synthase compare
HMPREF1058_RS06910 -3.0 -11.9 LL-diaminopimelate aminotransferase compare
HMPREF1058_RS02885 -2.9 -14.7 response regulator transcription factor compare
HMPREF1058_RS10255 -2.9 -3.4 hypothetical protein compare
HMPREF1058_RS17155 -2.8 -3.3 dCMP deaminase family protein compare
HMPREF1058_RS03535 -2.8 -1.9 UvrD-helicase domain-containing protein compare
HMPREF1058_RS06320 -2.8 -8.7 electron transport complex subunit RsxA compare
HMPREF1058_RS14125 -2.8 -17.0 magnesium transporter compare
HMPREF1058_RS06325 -2.7 -3.9 electron transport complex subunit E compare
HMPREF1058_RS16825 -2.7 -6.3 acetolactate synthase small subunit compare
HMPREF1058_RS17060 -2.7 -8.6 HAD family hydrolase compare
HMPREF1058_RS04295 -2.6 -5.8 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS03970 -2.6 -3.8 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS02800 -2.6 -8.3 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS06345 -2.6 -6.3 Fe-S cluster domain-containing protein compare
HMPREF1058_RS18265 -2.5 -2.4 aspartate 1-decarboxylase compare
HMPREF1058_RS04075 -2.5 -1.7 DUF58 domain-containing protein compare
HMPREF1058_RS04290 -2.4 -8.7 DUF1015 domain-containing protein compare
HMPREF1058_RS06885 -2.4 -13.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
HMPREF1058_RS08325 -2.4 -8.4 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS04300 -2.3 -7.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS11205 -2.3 -1.6 radical SAM protein compare
HMPREF1058_RS09610 -2.3 -8.3 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS06350 -2.2 -6.2 SoxR reducing system RseC family protein compare
HMPREF1058_RS10820 -2.2 -14.3 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS04080 -2.2 -2.6 AAA family ATPase compare
HMPREF1058_RS15665 -2.2 -8.5 MFS transporter compare
HMPREF1058_RS05780 -2.2 -9.2 PD40 domain-containing protein compare
HMPREF1058_RS02170 -2.2 -7.6 hypothetical protein compare
HMPREF1058_RS05140 -2.2 -1.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS17205 -2.1 -2.4 DUF4199 domain-containing protein compare
HMPREF1058_RS10075 -2.1 -13.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS04070 -2.1 -2.8 hypothetical protein compare
HMPREF1058_RS13790 -2.1 -10.4 GTPase HflX compare
HMPREF1058_RS00205 -2.1 -10.6 cation:proton antiporter compare
HMPREF1058_RS15375 -2.1 -1.9 DUF4369 domain-containing protein compare
HMPREF1058_RS11220 -2.0 -1.7 RNA methyltransferase compare
HMPREF1058_RS08835 -2.0 -9.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS11890 -2.0 -4.1 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS17035 -2.0 -8.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS00700 -2.0 -8.9 DUF4831 family protein compare
HMPREF1058_RS00560 -2.0 -3.5 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS01650 -1.9 -5.1 hypothetical protein compare
HMPREF1058_RS04045 -1.9 -4.3 tetratricopeptide repeat protein compare
HMPREF1058_RS16845 -1.9 -5.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS10270 -1.9 -4.4 hypothetical protein compare
HMPREF1058_RS10080 -1.9 -12.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS12110 -1.9 -7.5 biosynthetic arginine decarboxylase compare
HMPREF1058_RS16690 -1.8 -8.5 NTP transferase domain-containing protein compare
HMPREF1058_RS00590 -1.8 -3.5 hypothetical protein compare
HMPREF1058_RS14205 -1.8 -7.8 6-phosphofructokinase compare
HMPREF1058_RS14490 -1.8 -10.6 S9 family peptidase compare
HMPREF1058_RS04050 -1.8 -2.4 protein BatD compare
HMPREF1058_RS10290 -1.8 -5.9 hypothetical protein compare
HMPREF1058_RS14505 -1.8 -4.6 mechanosensitive ion channel compare
HMPREF1058_RS04995 -1.8 -10.5 putative sulfate exporter family transporter compare
HMPREF1058_RS08485 -1.8 -10.5 GNAT family N-acetyltransferase compare
HMPREF1058_RS14020 -1.8 -8.8 cardiolipin synthase compare
HMPREF1058_RS15520 -1.7 -2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS13635 -1.7 -4.1 gliding motility lipoprotein GldH compare
HMPREF1058_RS17055 -1.7 -5.6 flippase-like domain-containing protein compare
HMPREF1058_RS14325 -1.7 -6.9 aconitate hydratase compare
HMPREF1058_RS11490 -1.7 -4.3 redox-regulated ATPase YchF compare
HMPREF1058_RS14330 -1.7 -6.5 NADP-dependent isocitrate dehydrogenase compare
HMPREF1058_RS19090 -1.7 -1.2 tRNA-Phe compare
HMPREF1058_RS06915 -1.6 -4.9 diaminopimelate epimerase compare
HMPREF1058_RS11745 -1.6 -4.5 WbqC family protein compare
HMPREF1058_RS04370 -1.6 -4.9 agmatine deiminase family protein compare
HMPREF1058_RS06920 -1.6 -9.6 glutamate synthase large subunit conserved
HMPREF1058_RS09750 -1.6 -4.6 glycosyltransferase compare
HMPREF1058_RS15435 -1.6 -7.8 hypothetical protein compare
HMPREF1058_RS06900 -1.6 -1.9 P-II family nitrogen regulator compare
HMPREF1058_RS09685 -1.6 -9.4 tetratricopeptide repeat protein compare
HMPREF1058_RS14590 -1.6 -1.0 AraC family transcriptional regulator compare
HMPREF1058_RS13735 -1.5 -3.1 hypothetical protein compare
HMPREF1058_RS11380 -1.5 -5.2 DUF4271 domain-containing protein compare
HMPREF1058_RS11535 -1.5 -6.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS06410 -1.5 -2.7 elongation factor 4 compare
HMPREF1058_RS06330 -1.5 -3.6 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS00515 -1.5 -6.7 YicC family protein compare
HMPREF1058_RS11910 -1.5 -7.6 DEAD/DEAH box helicase compare
HMPREF1058_RS17815 -1.4 -5.2 MFS transporter compare
HMPREF1058_RS15975 -1.4 -5.5 saccharopine dehydrogenase family protein compare
HMPREF1058_RS10955 -1.4 -5.2 phosphatase PAP2 family protein compare
HMPREF1058_RS00540 -1.4 -8.5 M23 family metallopeptidase compare
HMPREF1058_RS13350 -1.4 -8.3 Trk system potassium transporter TrkA compare
HMPREF1058_RS13965 -1.4 -2.3 hypothetical protein compare
HMPREF1058_RS09745 -1.4 -6.4 glycosyltransferase compare
HMPREF1058_RS14835 -1.4 -3.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS06565 -1.4 -4.0 phosphate signaling complex protein PhoU compare
HMPREF1058_RS05930 -1.4 -8.5 MFS transporter compare
HMPREF1058_RS00565 -1.4 -6.9 hemolysin III family protein compare
HMPREF1058_RS10360 -1.3 -2.5 hypothetical protein compare
HMPREF1058_RS20340 -1.3 -2.4 DUF3873 family protein compare
HMPREF1058_RS05795 -1.3 -3.6 DMT family protein compare
HMPREF1058_RS07670 -1.3 -1.5 HAMP domain-containing histidine kinase compare
HMPREF1058_RS06160 -1.3 -6.6 formyltetrahydrofolate deformylase compare
HMPREF1058_RS01745 -1.3 -3.8 PorT family protein compare
HMPREF1058_RS16620 -1.3 -7.8 GGGtGRT protein compare
HMPREF1058_RS14215 -1.3 -4.0 (d)CMP kinase compare
HMPREF1058_RS07625 -1.3 -2.2 hypothetical protein compare
HMPREF1058_RS20295 -1.3 -1.4 hypothetical protein compare
HMPREF1058_RS03510 -1.2 -4.7 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS15380 -1.2 -8.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS06615 -1.2 -4.2 GDP-mannose 4,6-dehydratase compare
HMPREF1058_RS03530 -1.2 -0.8 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS06925 -1.2 -3.3 glutamate synthase subunit beta compare
HMPREF1058_RS10970 -1.2 -6.3 ribonuclease R compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Serine in Phocaeicola vulgatus CL09T03C04

For nitrogen source L-Serine across organisms