Experiment set10S245 for Phocaeicola vulgatus CL09T03C04

Compare to:

L-Glutamine nitrogen source; Varel_Bryant_medium_Glucose_DTT_noNitrogen

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS14785 -5.5 -7.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS12115 -5.5 -11.2 acetylglutamate kinase compare
HMPREF1058_RS12780 -5.3 -9.5 M20 family metallo-hydrolase compare
HMPREF1058_RS15075 -5.2 -8.7 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS17885 -5.2 -10.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS10975 -5.2 -10.0 serine acetyltransferase compare
HMPREF1058_RS06175 -5.2 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS09585 -5.1 -16.4 argininosuccinate lyase compare
HMPREF1058_RS08850 -5.0 -10.7 N-acetyltransferase compare
HMPREF1058_RS03000 -4.9 -7.5 IMP dehydrogenase compare
HMPREF1058_RS07170 -4.9 -9.4 tryptophan synthase subunit beta compare
HMPREF1058_RS06170 -4.9 -5.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS14730 -4.9 -10.4 threonine synthase compare
HMPREF1058_RS14550 -4.9 -11.7 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS07200 -4.6 -10.8 tryptophan synthase subunit alpha compare
HMPREF1058_RS06180 -4.6 -6.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS09675 -4.6 -8.3 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS13795 -4.6 -7.0 DUF4954 family protein compare
HMPREF1058_RS08645 -4.6 -11.5 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS14790 -4.6 -12.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14795 -4.5 -6.9 prephenate dehydratase compare
HMPREF1058_RS12105 -4.5 -6.9 shikimate kinase compare
HMPREF1058_RS08840 -4.5 -11.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14770 -4.5 -8.0 prephenate dehydrogenase compare
HMPREF1058_RS16815 -4.4 -10.2 dihydroxy-acid dehydratase compare
HMPREF1058_RS15885 -4.4 -9.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS15870 -4.4 -10.1 ATP phosphoribosyltransferase compare
HMPREF1058_RS14565 -4.4 -14.9 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS14545 -4.3 -11.5 2-isopropylmalate synthase compare
HMPREF1058_RS10995 -4.3 -8.7 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS14720 -4.3 -17.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS04295 -4.2 -4.1 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS16835 -4.2 -6.5 ketol-acid reductoisomerase compare
HMPREF1058_RS08025 -4.2 -7.0 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS02875 -4.1 -7.9 cysteine synthase A compare
HMPREF1058_RS03910 -4.1 -6.3 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS14725 -4.1 -12.8 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS07195 -4.1 -4.8 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS17940 -4.1 -8.3 alpha-amylase compare
HMPREF1058_RS15875 -4.1 -10.4 histidinol dehydrogenase compare
HMPREF1058_RS07955 -4.0 -15.4 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS16820 -4.0 -10.7 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS16730 -4.0 -4.7 chorismate synthase compare
HMPREF1058_RS14610 -4.0 -16.5 adenylosuccinate synthase compare
HMPREF1058_RS08650 -3.9 -11.5 glutamate 5-kinase compare
HMPREF1058_RS06165 -3.9 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS07190 -3.8 -8.4 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS07180 -3.8 -5.8 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS03800 -3.8 -10.5 serine hydroxymethyltransferase compare
HMPREF1058_RS07185 -3.8 -10.9 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS08845 -3.7 -10.7 argininosuccinate synthase compare
HMPREF1058_RS17935 -3.7 -10.4 glycosyltransferase compare
HMPREF1058_RS02220 -3.7 -3.5 branched-chain amino acid aminotransferase compare
HMPREF1058_RS15880 -3.6 -11.5 histidinol-phosphate transaminase compare
HMPREF1058_RS16760 -3.6 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS08640 -3.6 -4.3 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07175 -3.5 -10.8 anthranilate synthase component I family protein compare
HMPREF1058_RS03970 -3.5 -2.4 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS08830 -3.5 -10.3 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS11730 -3.5 -3.3 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS15665 -3.4 -7.9 MFS transporter compare
HMPREF1058_RS06345 -3.4 -6.5 Fe-S cluster domain-containing protein compare
HMPREF1058_RS04300 -3.3 -6.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS13970 -3.3 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS03075 -3.2 -2.2 DNA helicase RecQ compare
HMPREF1058_RS16500 -3.2 -3.1 OadG family protein compare
HMPREF1058_RS08855 -3.2 -6.0 arginine repressor compare
HMPREF1058_RS16510 -3.2 -3.7 methylmalonyl-CoA epimerase compare
HMPREF1058_RS02115 -3.1 -12.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS06195 -3.1 -6.2 diaminopimelate decarboxylase compare
HMPREF1058_RS02755 -3.1 -2.1 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS12490 -3.1 -4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS16750 -3.0 -2.9 shikimate dehydrogenase compare
HMPREF1058_RS14560 -3.0 -12.1 2-isopropylmalate synthase compare
HMPREF1058_RS14125 -3.0 -16.5 magnesium transporter compare
HMPREF1058_RS16490 -2.9 -12.7 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS15395 -2.9 -2.0 dihydroorotase compare
HMPREF1058_RS06335 -2.9 -7.6 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS06330 -2.8 -5.0 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS02750 -2.8 -3.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS17930 -2.8 -13.2 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS14555 -2.8 -3.2 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS16825 -2.7 -7.8 acetolactate synthase small subunit compare
HMPREF1058_RS04375 -2.7 -8.7 carbon-nitrogen hydrolase compare
HMPREF1058_RS06225 -2.7 -1.8 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS02410 -2.6 -17.1 methylmalonyl-CoA mutase compare
HMPREF1058_RS02135 -2.6 -10.8 phosphoenolpyruvate synthase compare
HMPREF1058_RS06320 -2.6 -7.9 electron transport complex subunit RsxA compare
HMPREF1058_RS12110 -2.6 -10.0 biosynthetic arginine decarboxylase compare
HMPREF1058_RS06190 -2.6 -7.7 aspartate kinase compare
HMPREF1058_RS14005 -2.6 -1.8 3-dehydroquinate synthase compare
HMPREF1058_RS05145 -2.6 -5.9 ATP-binding protein compare
HMPREF1058_RS00540 -2.6 -11.8 M23 family metallopeptidase compare
HMPREF1058_RS04070 -2.5 -1.7 hypothetical protein compare
HMPREF1058_RS03535 -2.5 -1.7 UvrD-helicase domain-containing protein compare
HMPREF1058_RS10255 -2.5 -3.7 hypothetical protein compare
HMPREF1058_RS17205 -2.5 -1.7 DUF4199 domain-containing protein compare
HMPREF1058_RS02405 -2.4 -15.1 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS17050 -2.4 -8.8 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS02885 -2.4 -12.4 response regulator transcription factor compare
HMPREF1058_RS00515 -2.4 -6.9 YicC family protein compare
HMPREF1058_RS16495 -2.3 -2.2 biotin/lipoyl-binding protein compare
HMPREF1058_RS04080 -2.3 -1.6 AAA family ATPase compare
HMPREF1058_RS17130 -2.3 -2.7 tetratricopeptide repeat protein compare
HMPREF1058_RS17040 -2.3 -5.6 NTP transferase domain-containing protein compare
HMPREF1058_RS02800 -2.3 -7.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS14200 -2.2 -11.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS06350 -2.2 -5.8 SoxR reducing system RseC family protein compare
HMPREF1058_RS00565 -2.2 -7.8 hemolysin III family protein compare
HMPREF1058_RS04550 -2.2 -1.7 hypothetical protein compare
HMPREF1058_RS14605 -2.2 -5.5 transcriptional repressor compare
HMPREF1058_RS08835 -2.2 -9.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS10495 -2.2 -2.8 rhomboid family intramembrane serine protease compare
HMPREF1058_RS04075 -2.2 -1.5 DUF58 domain-containing protein compare
HMPREF1058_RS14490 -2.1 -10.8 S9 family peptidase compare
HMPREF1058_RS13790 -2.1 -10.0 GTPase HflX compare
HMPREF1058_RS10075 -2.1 -12.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS02170 -2.1 -6.8 hypothetical protein compare
HMPREF1058_RS17060 -2.1 -7.2 HAD family hydrolase compare
HMPREF1058_RS05780 -2.1 -8.4 PD40 domain-containing protein compare
HMPREF1058_RS01650 -2.1 -4.8 hypothetical protein compare
HMPREF1058_RS09610 -2.0 -6.4 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS16505 -2.0 -4.8 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS16845 -2.0 -5.1 SurA N-terminal domain-containing protein compare
HMPREF1058_RS06325 -2.0 -2.7 electron transport complex subunit E compare
HMPREF1058_RS17155 -2.0 -3.0 dCMP deaminase family protein compare
HMPREF1058_RS17950 -1.9 -6.3 biotin synthase BioB compare
HMPREF1058_RS13350 -1.9 -10.4 Trk system potassium transporter TrkA compare
HMPREF1058_RS11380 -1.9 -7.0 DUF4271 domain-containing protein compare
HMPREF1058_RS15975 -1.9 -7.5 saccharopine dehydrogenase family protein compare
HMPREF1058_RS03310 -1.9 -8.9 carboxynorspermidine decarboxylase compare
HMPREF1058_RS17045 -1.9 -3.1 hypothetical protein compare
HMPREF1058_RS11375 -1.9 -1.5 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS10720 -1.9 -8.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS01665 -1.8 -3.7 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS10080 -1.8 -12.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS00700 -1.8 -8.1 DUF4831 family protein compare
HMPREF1058_RS08295 -1.8 -5.6 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS11220 -1.8 -1.4 RNA methyltransferase compare
HMPREF1058_RS15565 -1.8 -12.3 hypothetical protein compare
HMPREF1058_RS11040 -1.8 -5.5 polysaccharide deacetylase family protein compare
HMPREF1058_RS08485 -1.8 -11.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS02990 -1.8 -5.1 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS06340 -1.8 -4.2 electron transport complex subunit RsxC compare
HMPREF1058_RS11490 -1.8 -3.9 redox-regulated ATPase YchF compare
HMPREF1058_RS04045 -1.8 -3.6 tetratricopeptide repeat protein compare
HMPREF1058_RS10970 -1.7 -7.6 ribonuclease R compare
HMPREF1058_RS11535 -1.7 -5.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS04065 -1.7 -1.6 VWA domain-containing protein compare
HMPREF1058_RS10295 -1.7 -2.8 hypothetical protein compare
HMPREF1058_RS05140 -1.7 -2.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS10955 -1.7 -5.6 phosphatase PAP2 family protein compare
HMPREF1058_RS07040 -1.6 -9.5 tetratricopeptide repeat protein compare
HMPREF1058_RS15460 -1.6 -4.5 amidohydrolase compare
HMPREF1058_RS04370 -1.6 -4.5 agmatine deiminase family protein compare
HMPREF1058_RS18265 -1.6 -2.6 aspartate 1-decarboxylase compare
HMPREF1058_RS11625 -1.6 -11.0 S41 family peptidase compare
HMPREF1058_RS11890 -1.6 -3.4 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS14215 -1.6 -4.2 (d)CMP kinase compare
HMPREF1058_RS13635 -1.6 -3.3 gliding motility lipoprotein GldH compare
HMPREF1058_RS13735 -1.5 -2.8 hypothetical protein compare
HMPREF1058_RS06040 -1.5 -5.5 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS01800 -1.5 -2.8 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS15520 -1.5 -1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS06875 -1.5 -6.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1058_RS10820 -1.5 -8.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS10270 -1.5 -2.8 hypothetical protein compare
HMPREF1058_RS09925 -1.5 -2.2 conjugal transfer protein TraO compare
HMPREF1058_RS11205 -1.5 -1.2 radical SAM protein compare
HMPREF1058_RS09680 -1.4 -3.3 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS04050 -1.4 -2.1 protein BatD compare
HMPREF1058_RS01745 -1.4 -3.5 PorT family protein compare
HMPREF1058_RS06560 -1.4 -6.6 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS00590 -1.4 -3.1 hypothetical protein compare
HMPREF1058_RS15435 -1.4 -6.7 hypothetical protein compare
HMPREF1058_RS09685 -1.4 -8.5 tetratricopeptide repeat protein compare
HMPREF1058_RS17150 -1.4 -9.9 S41 family peptidase compare
HMPREF1058_RS14205 -1.4 -7.0 6-phosphofructokinase compare
HMPREF1058_RS13655 -1.4 -9.3 cardiolipin synthase compare
HMPREF1058_RS21210 -1.3 -3.2 hypothetical protein compare
HMPREF1058_RS06410 -1.3 -2.1 elongation factor 4 compare
HMPREF1058_RS05755 -1.3 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS08325 -1.3 -5.9 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS06870 -1.3 -9.4 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit compare
HMPREF1058_RS04580 -1.3 -2.1 hypothetical protein compare
HMPREF1058_RS11910 -1.3 -6.4 DEAD/DEAH box helicase compare
HMPREF1058_RS14505 -1.3 -3.5 mechanosensitive ion channel compare
HMPREF1058_RS11310 -1.3 -4.8 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS17945 -1.3 -6.2 hypothetical protein compare
HMPREF1058_RS06615 -1.3 -3.7 GDP-mannose 4,6-dehydratase compare
HMPREF1058_RS17080 -1.3 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS18940 -1.3 -2.2 hypothetical protein compare
HMPREF1058_RS00595 -1.2 -2.3 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS06310 -1.2 -5.1 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS19015 -1.2 -3.1 hypothetical protein compare
HMPREF1058_RS09750 -1.2 -3.7 glycosyltransferase compare
HMPREF1058_RS12460 -1.2 -7.4 tetratricopeptide repeat protein compare
HMPREF1058_RS14225 -1.2 -4.6 polyprenyl synthetase family protein compare
HMPREF1058_RS02110 -1.2 -8.6 NADP-dependent malic enzyme compare
HMPREF1058_RS10335 -1.2 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in nitrogen source experiments

For nitrogen source L-Glutamine across organisms