Experiment set10S232 for Phocaeicola vulgatus CL09T03C04

Compare to:

L-Fucose 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS08845 -6.0 -8.2 argininosuccinate synthase compare
HMPREF1058_RS12780 -5.8 -9.7 M20 family metallo-hydrolase compare
HMPREF1058_RS14785 -5.4 -9.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS15875 -5.4 -8.2 histidinol dehydrogenase compare
HMPREF1058_RS09585 -5.4 -17.2 argininosuccinate lyase compare
HMPREF1058_RS08850 -5.2 -12.1 N-acetyltransferase compare
HMPREF1058_RS15870 -5.1 -9.8 ATP phosphoribosyltransferase compare
HMPREF1058_RS12115 -5.1 -13.0 acetylglutamate kinase compare
HMPREF1058_RS14730 -5.0 -12.0 threonine synthase compare
HMPREF1058_RS12275 -5.0 -14.6 L-fucose isomerase conserved
HMPREF1058_RS08875 -5.0 -13.2 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS09675 -4.9 -8.1 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS15885 -4.8 -10.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14720 -4.8 -18.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS08840 -4.7 -12.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14725 -4.6 -12.7 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14770 -4.6 -8.9 prephenate dehydrogenase compare
HMPREF1058_RS06170 -4.6 -6.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS08860 -4.6 -10.1 rhamnulokinase compare
HMPREF1058_RS14920 -4.5 -13.4 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS04295 -4.4 -4.3 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS04300 -4.4 -5.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS10075 -4.3 -14.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS06180 -4.2 -8.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS10080 -4.2 -19.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS13970 -4.0 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS15880 -3.9 -11.6 histidinol-phosphate transaminase compare
HMPREF1058_RS16730 -3.8 -5.8 chorismate synthase compare
HMPREF1058_RS12270 -3.8 -18.9 L-fucose:H+ symporter permease conserved
HMPREF1058_RS14795 -3.7 -9.0 prephenate dehydratase compare
HMPREF1058_RS06175 -3.7 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS08645 -3.7 -10.0 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08650 -3.6 -7.4 glutamate 5-kinase compare
HMPREF1058_RS03000 -3.5 -11.6 IMP dehydrogenase compare
HMPREF1058_RS02750 -3.5 -2.4 BamA/TamA family outer membrane protein compare
HMPREF1058_RS02755 -3.4 -4.0 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS16750 -3.4 -3.3 shikimate dehydrogenase compare
HMPREF1058_RS10995 -3.4 -10.4 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS16495 -3.3 -2.3 biotin/lipoyl-binding protein compare
HMPREF1058_RS14790 -3.3 -12.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS15395 -3.3 -2.3 dihydroorotase compare
HMPREF1058_RS08025 -3.3 -9.0 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS08640 -3.2 -4.7 acetylornithine carbamoyltransferase compare
HMPREF1058_RS14610 -3.2 -15.9 adenylosuccinate synthase compare
HMPREF1058_RS11270 -3.2 -12.4 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS10720 -3.2 -10.4 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS07955 -3.1 -18.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS08060 -3.1 -8.3 hypothetical protein compare
HMPREF1058_RS17815 -3.0 -7.1 MFS transporter compare
HMPREF1058_RS03535 -3.0 -2.0 UvrD-helicase domain-containing protein compare
HMPREF1058_RS07200 -2.9 -9.9 tryptophan synthase subunit alpha compare
HMPREF1058_RS18205 -2.9 -2.0 ferrous iron transport protein B compare
HMPREF1058_RS15435 -2.9 -10.4 hypothetical protein compare
HMPREF1058_RS17155 -2.9 -3.9 dCMP deaminase family protein compare
HMPREF1058_RS15375 -2.9 -2.0 DUF4369 domain-containing protein compare
HMPREF1058_RS11890 -2.9 -4.3 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS14830 -2.8 -4.0 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS00595 -2.8 -4.5 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS04080 -2.8 -1.9 AAA family ATPase compare
HMPREF1058_RS04070 -2.8 -2.7 hypothetical protein compare
HMPREF1058_RS17050 -2.8 -10.2 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS12105 -2.7 -3.0 shikimate kinase compare
HMPREF1058_RS02220 -2.7 -5.9 branched-chain amino acid aminotransferase compare
HMPREF1058_RS03970 -2.7 -3.9 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS16760 -2.6 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS14565 -2.6 -12.5 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS07190 -2.6 -6.5 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS14005 -2.6 -3.5 3-dehydroquinate synthase compare
HMPREF1058_RS08855 -2.6 -4.1 arginine repressor compare
HMPREF1058_RS00565 -2.6 -9.8 hemolysin III family protein compare
HMPREF1058_RS03085 -2.5 -1.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS16820 -2.5 -12.4 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS16500 -2.5 -4.1 OadG family protein compare
HMPREF1058_RS10495 -2.5 -2.9 rhomboid family intramembrane serine protease compare
HMPREF1058_RS17040 -2.5 -6.1 NTP transferase domain-containing protein compare
HMPREF1058_RS14550 -2.5 -12.3 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS01800 -2.4 -3.6 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS16845 -2.4 -6.2 SurA N-terminal domain-containing protein compare
HMPREF1058_RS09445 -2.4 -2.2 tyrosine-type recombinase/integrase compare
HMPREF1058_RS04075 -2.3 -2.2 DUF58 domain-containing protein compare
HMPREF1058_RS05140 -2.3 -1.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS07185 -2.3 -10.5 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS16815 -2.3 -11.5 dihydroxy-acid dehydratase compare
HMPREF1058_RS12505 -2.3 -7.0 RNA polymerase factor sigma-54 compare
HMPREF1058_RS06195 -2.3 -8.0 diaminopimelate decarboxylase compare
HMPREF1058_RS06335 -2.2 -8.8 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS16835 -2.2 -9.1 ketol-acid reductoisomerase compare
HMPREF1058_RS17060 -2.2 -8.4 HAD family hydrolase compare
HMPREF1058_RS06330 -2.2 -5.9 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS04375 -2.2 -7.3 carbon-nitrogen hydrolase compare
HMPREF1058_RS17045 -2.2 -4.2 hypothetical protein compare
HMPREF1058_RS08830 -2.2 -9.3 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS13795 -2.1 -10.6 DUF4954 family protein compare
HMPREF1058_RS14555 -2.1 -3.0 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS05520 -2.1 -1.8 DUF4357 domain-containing protein compare
HMPREF1058_RS11915 -2.1 -2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04065 -2.1 -2.0 VWA domain-containing protein compare
HMPREF1058_RS04045 -2.1 -5.0 tetratricopeptide repeat protein compare
HMPREF1058_RS18265 -2.1 -3.0 aspartate 1-decarboxylase compare
HMPREF1058_RS02170 -2.0 -7.7 hypothetical protein compare
HMPREF1058_RS17080 -2.0 -3.1 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS10270 -2.0 -4.5 hypothetical protein compare
HMPREF1058_RS15565 -2.0 -13.4 hypothetical protein compare
HMPREF1058_RS04050 -2.0 -2.3 protein BatD compare
HMPREF1058_RS07170 -2.0 -8.8 tryptophan synthase subunit beta compare
HMPREF1058_RS08295 -1.9 -6.2 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS17130 -1.8 -2.7 tetratricopeptide repeat protein compare
HMPREF1058_RS06340 -1.8 -5.0 electron transport complex subunit RsxC compare
HMPREF1058_RS06320 -1.8 -6.8 electron transport complex subunit RsxA compare
HMPREF1058_RS12110 -1.7 -5.7 biosynthetic arginine decarboxylase compare
HMPREF1058_RS02800 -1.7 -6.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS11930 -1.7 -4.1 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS06350 -1.7 -5.6 SoxR reducing system RseC family protein compare
HMPREF1058_RS01745 -1.7 -5.0 PorT family protein compare
HMPREF1058_RS14020 -1.6 -7.8 cardiolipin synthase compare
HMPREF1058_RS03135 -1.6 -2.5 5S ribosomal RNA compare
HMPREF1058_RS16505 -1.6 -5.5 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS07195 -1.6 -4.2 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS15645 -1.6 -4.9 NUDIX hydrolase compare
HMPREF1058_RS19025 -1.5 -2.9 hypothetical protein compare
HMPREF1058_RS14590 -1.5 -1.0 AraC family transcriptional regulator compare
HMPREF1058_RS14605 -1.5 -4.7 transcriptional repressor compare
HMPREF1058_RS17205 -1.5 -1.9 DUF4199 domain-containing protein compare
HMPREF1058_RS00590 -1.5 -3.5 hypothetical protein compare
HMPREF1058_RS05780 -1.5 -7.9 PD40 domain-containing protein compare
HMPREF1058_RS11925 -1.5 -2.5 DUF2975 domain-containing protein compare
HMPREF1058_RS00700 -1.5 -7.2 DUF4831 family protein compare
HMPREF1058_RS11380 -1.5 -6.4 DUF4271 domain-containing protein compare
HMPREF1058_RS11310 -1.4 -5.4 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS15915 -1.4 -3.6 OmpH family outer membrane protein compare
HMPREF1058_RS07655 -1.4 -1.9 hypothetical protein compare
HMPREF1058_RS14490 -1.4 -8.7 S9 family peptidase compare
HMPREF1058_RS10955 -1.4 -5.4 phosphatase PAP2 family protein compare
HMPREF1058_RS14545 -1.4 -7.2 2-isopropylmalate synthase compare
HMPREF1058_RS07670 -1.4 -1.6 HAMP domain-containing histidine kinase compare
HMPREF1058_RS07060 -1.4 -5.5 DUF3869 domain-containing protein compare
HMPREF1058_RS09685 -1.4 -8.9 tetratricopeptide repeat protein compare
HMPREF1058_RS16255 -1.4 -7.2 isochorismate synthase compare
HMPREF1058_RS12490 -1.3 -3.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09750 -1.3 -4.3 glycosyltransferase compare
HMPREF1058_RS17055 -1.3 -5.1 flippase-like domain-containing protein compare
HMPREF1058_RS16250 -1.3 -6.8 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS11205 -1.3 -1.1 radical SAM protein compare
HMPREF1058_RS11315 -1.3 -9.5 tRNA pseudouridine(55) synthase TruB compare
HMPREF1058_RS12280 -1.3 -4.7 GntR family transcriptional regulator compare
HMPREF1058_RS08785 -1.3 -6.3 aldo/keto reductase compare
HMPREF1058_RS10840 -1.2 -1.8 hypothetical protein compare
HMPREF1058_RS17075 -1.2 -7.2 inositol-3-phosphate synthase compare
HMPREF1058_RS11625 -1.2 -7.6 S41 family peptidase compare
HMPREF1058_RS07065 -1.2 -6.2 OmpA family protein compare
HMPREF1058_RS15430 -1.2 -6.7 aspartate-alanine antiporter compare
HMPREF1058_RS0119825 -1.2 -8.3 DEAD/DEAH box helicase compare
HMPREF1058_RS13735 -1.2 -2.3 hypothetical protein compare
HMPREF1058_RS11920 -1.2 -5.2 DUF2975 domain-containing protein compare
HMPREF1058_RS11000 -1.2 -5.7 hypothetical protein compare
HMPREF1058_RS14270 -1.2 -7.5 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS06225 -1.2 -2.1 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS18400 -1.2 -4.7 RidA family protein compare
HMPREF1058_RS14465 -1.1 -0.8 enoyl-ACP reductase compare
HMPREF1058_RS14505 -1.1 -3.3 mechanosensitive ion channel compare
HMPREF1058_RS18235 -1.1 -3.0 3'-5' exonuclease compare
HMPREF1058_RS06190 -1.1 -4.5 aspartate kinase compare
HMPREF1058_RS16690 -1.1 -5.4 NTP transferase domain-containing protein compare
HMPREF1058_RS01450 -1.1 -2.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
HMPREF1058_RS13730 -1.1 -2.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS03530 -1.1 -0.9 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS06345 -1.0 -2.5 Fe-S cluster domain-containing protein compare
HMPREF1058_RS15450 -1.0 -8.2 transcription-repair coupling factor compare
HMPREF1058_RS10500 -1.0 -4.4 HU family DNA-binding protein compare
HMPREF1058_RS14835 -1.0 -2.8 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS04035 -1.0 -2.4 hypothetical protein compare
HMPREF1058_RS02410 -1.0 -7.9 methylmalonyl-CoA mutase compare
HMPREF1058_RS07960 -1.0 -8.6 response regulator compare
HMPREF1058_RS17875 -1.0 -3.3 DUF1573 domain-containing protein compare
HMPREF1058_RS01925 -1.0 -3.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS07040 -1.0 -6.8 tetratricopeptide repeat protein compare
HMPREF1058_RS16260 -1.0 -2.6 hotdog fold thioesterase compare
HMPREF1058_RS09680 -1.0 -2.7 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS00205 -1.0 -6.2 cation:proton antiporter compare
HMPREF1058_RS09745 -1.0 -4.7 glycosyltransferase compare
HMPREF1058_RS19090 -1.0 -0.9 tRNA-Phe compare
HMPREF1058_RS08780 -0.9 -5.3 4Fe-4S binding protein compare
HMPREF1058_RS15520 -0.9 -1.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS01975 -0.9 -3.1 hypothetical protein compare
HMPREF1058_RS13655 -0.9 -6.1 cardiolipin synthase compare
HMPREF1058_RS13965 -0.9 -1.7 hypothetical protein compare
HMPREF1058_RS14075 -0.9 -2.2 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS04015 -0.9 -4.4 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1058_RS20295 -0.9 -1.2 hypothetical protein compare
HMPREF1058_RS17775 -0.9 -2.8 hypothetical protein compare
HMPREF1058_RS02405 -0.9 -6.9 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS06310 -0.9 -4.2 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS05020 -0.9 -4.5 twin-arginine translocase subunit TatC compare
HMPREF1058_RS10295 -0.9 -2.0 hypothetical protein compare
HMPREF1058_RS00560 -0.9 -1.6 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS0119250 -0.9 -2.0 hypothetical protein compare
HMPREF1058_RS06720 -0.9 -3.2 glycosyltransferase compare
HMPREF1058_RS12065 -0.9 -1.2 DUF4491 family protein compare
HMPREF1058_RS17395 -0.9 -1.4 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS21575 -0.9 -1.8 mobilization protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Fucose in Phocaeicola vulgatus CL09T03C04

For carbon source L-Fucose across organisms