Experiment set10S223 for Phocaeicola vulgatus CL09T03C04

Compare to:

Pectin from citrus peel; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS06345 -3.1 -6.6 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06335 -3.1 -5.2 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS15435 -3.0 -8.0 hypothetical protein compare
HMPREF1058_RS02975 -3.0 -3.3 hypothetical protein compare
HMPREF1058_RS06350 -3.0 -5.3 SoxR reducing system RseC family protein compare
HMPREF1058_RS03980 -2.9 -2.0 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS16730 -2.9 -4.7 chorismate synthase compare
HMPREF1058_RS00560 -2.8 -3.3 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS10720 -2.8 -7.7 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS06320 -2.7 -6.5 electron transport complex subunit RsxA compare
HMPREF1058_RS04065 -2.7 -1.8 VWA domain-containing protein compare
HMPREF1058_RS06340 -2.7 -4.1 electron transport complex subunit RsxC compare
HMPREF1058_RS16495 -2.5 -1.7 biotin/lipoyl-binding protein compare
HMPREF1058_RS08535 -2.5 -2.9 elongation factor P compare
HMPREF1058_RS11925 -2.5 -2.3 DUF2975 domain-containing protein compare
HMPREF1058_RS02750 -2.5 -2.9 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06195 -2.4 -5.7 diaminopimelate decarboxylase compare
HMPREF1058_RS12490 -2.3 -3.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS02755 -2.3 -3.9 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS04045 -2.3 -3.1 tetratricopeptide repeat protein compare
HMPREF1058_RS16500 -2.3 -2.7 OadG family protein compare
HMPREF1058_RS04295 -2.3 -4.8 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS10995 -2.2 -7.8 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS04070 -2.2 -1.5 hypothetical protein compare
HMPREF1058_RS01690 -2.2 -6.2 sugar kinase compare
HMPREF1058_RS03535 -2.2 -1.5 UvrD-helicase domain-containing protein compare
HMPREF1058_RS16750 -2.1 -2.9 shikimate dehydrogenase compare
HMPREF1058_RS17815 -2.1 -5.0 MFS transporter compare
HMPREF1058_RS00590 -2.1 -3.1 hypothetical protein compare
HMPREF1058_RS14200 -2.1 -9.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS16505 -2.0 -2.8 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS17080 -2.0 -3.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14555 -2.0 -2.6 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS03000 -2.0 -8.4 IMP dehydrogenase compare
HMPREF1058_RS06555 -2.0 -3.4 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS17130 -2.0 -1.9 tetratricopeptide repeat protein compare
HMPREF1058_RS03970 -2.0 -2.6 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS01570 -1.9 -7.0 ABC transporter substrate-binding protein compare
HMPREF1058_RS10270 -1.9 -3.5 hypothetical protein compare
HMPREF1058_RS18205 -1.9 -1.8 ferrous iron transport protein B compare
HMPREF1058_RS02220 -1.9 -3.9 branched-chain amino acid aminotransferase compare
HMPREF1058_RS13795 -1.9 -8.3 DUF4954 family protein compare
HMPREF1058_RS01385 -1.9 -6.8 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS12505 -1.9 -4.6 RNA polymerase factor sigma-54 compare
HMPREF1058_RS07175 -1.8 -8.4 anthranilate synthase component I family protein compare
HMPREF1058_RS04075 -1.8 -1.3 DUF58 domain-containing protein compare
HMPREF1058_RS14720 -1.8 -12.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS14215 -1.8 -3.6 (d)CMP kinase compare
HMPREF1058_RS07955 -1.8 -11.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS18525 -1.8 -1.5 hypothetical protein compare
HMPREF1058_RS07185 -1.8 -8.1 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS12990 -1.8 -2.3 hypothetical protein compare
HMPREF1058_RS02485 -1.8 -5.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1058_RS14035 -1.8 -1.2 hypothetical protein compare
HMPREF1058_RS01665 -1.8 -3.0 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS12105 -1.7 -5.3 shikimate kinase compare
HMPREF1058_RS06325 -1.7 -2.0 electron transport complex subunit E compare
HMPREF1058_RS07200 -1.7 -6.5 tryptophan synthase subunit alpha compare
HMPREF1058_RS14920 -1.7 -8.8 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS08295 -1.7 -4.5 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS03085 -1.7 -1.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS01280 -1.7 -4.4 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1058_RS12070 -1.7 -3.3 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS07190 -1.7 -3.5 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS18265 -1.7 -1.9 aspartate 1-decarboxylase compare
HMPREF1058_RS06310 -1.7 -5.4 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS01685 -1.7 -3.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS06600 -1.6 -1.6 DedA family protein compare
HMPREF1058_RS05925 -1.6 -1.5 DUF5024 domain-containing protein compare
HMPREF1058_RS16845 -1.6 -4.0 SurA N-terminal domain-containing protein compare
HMPREF1058_RS09890 -1.6 -1.2 DUF3876 domain-containing protein compare
HMPREF1058_RS16690 -1.6 -6.0 NTP transferase domain-containing protein compare
HMPREF1058_RS06225 -1.6 -2.1 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS17040 -1.6 -4.1 NTP transferase domain-containing protein compare
HMPREF1058_RS13735 -1.6 -2.3 hypothetical protein compare
HMPREF1058_RS04300 -1.6 -4.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS14610 -1.6 -9.4 adenylosuccinate synthase compare
HMPREF1058_RS09970 -1.6 -1.2 hypothetical protein compare
HMPREF1058_RS07655 -1.6 -1.3 hypothetical protein compare
HMPREF1058_RS04515 -1.6 -2.2 hypothetical protein compare
HMPREF1058_RS14550 -1.6 -7.5 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS10840 -1.5 -2.0 hypothetical protein compare
HMPREF1058_RS07170 -1.5 -5.9 tryptophan synthase subunit beta compare
HMPREF1058_RS17060 -1.5 -5.1 HAD family hydrolase compare
HMPREF1058_RS02170 -1.5 -5.2 hypothetical protein compare
HMPREF1058_RS14725 -1.5 -5.6 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS09180 -1.5 -3.2 hypothetical protein compare
HMPREF1058_RS02410 -1.5 -9.4 methylmalonyl-CoA mutase compare
HMPREF1058_RS17205 -1.5 -1.4 DUF4199 domain-containing protein compare
HMPREF1058_RS14505 -1.5 -3.2 mechanosensitive ion channel compare
HMPREF1058_RS14785 -1.5 -6.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS04080 -1.5 -2.0 AAA family ATPase compare
HMPREF1058_RS06410 -1.5 -1.9 elongation factor 4 compare
HMPREF1058_RS11205 -1.5 -1.0 radical SAM protein compare
HMPREF1058_RS01270 -1.5 -4.9 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS05140 -1.5 -1.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS11040 -1.4 -4.0 polysaccharide deacetylase family protein compare
HMPREF1058_RS13970 -1.4 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS01700 -1.4 -5.3 altronate dehydratase compare
HMPREF1058_RS14730 -1.4 -7.1 threonine synthase compare
HMPREF1058_RS01590 -1.4 -6.8 glucuronate isomerase compare
HMPREF1058_RS01565 -1.4 -6.9 iron ABC transporter permease compare
HMPREF1058_RS17395 -1.4 -2.7 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS09185 -1.4 -1.7 DUF4252 domain-containing protein compare
HMPREF1058_RS11220 -1.4 -1.1 RNA methyltransferase compare
HMPREF1058_RS05520 -1.4 -1.1 DUF4357 domain-containing protein compare
HMPREF1058_RS01275 -1.4 -5.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1058_RS04580 -1.4 -1.9 hypothetical protein compare
HMPREF1058_RS15075 -1.4 -7.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS01560 -1.4 -3.8 ABC transporter ATP-binding protein compare
HMPREF1058_RS04375 -1.4 -4.8 carbon-nitrogen hydrolase compare
HMPREF1058_RS19025 -1.4 -1.6 hypothetical protein compare
HMPREF1058_RS06190 -1.4 -5.3 aspartate kinase compare
HMPREF1058_RS15875 -1.4 -6.6 histidinol dehydrogenase compare
HMPREF1058_RS14005 -1.3 -2.7 3-dehydroquinate synthase compare
HMPREF1058_RS16400 -1.3 -4.3 DUF4738 domain-containing protein compare
HMPREF1058_RS17155 -1.3 -2.3 dCMP deaminase family protein compare
HMPREF1058_RS09745 -1.3 -5.1 glycosyltransferase compare
HMPREF1058_RS11890 -1.3 -2.6 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS11815 -1.3 -4.1 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS01845 -1.3 -1.8 site-specific integrase compare
HMPREF1058_RS14220 -1.3 -3.3 energy transducer TonB compare
HMPREF1058_RS04050 -1.3 -0.9 protein BatD compare
HMPREF1058_RS14490 -1.3 -7.1 S9 family peptidase compare
HMPREF1058_RS02405 -1.3 -8.9 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS01745 -1.3 -2.7 PorT family protein compare
HMPREF1058_RS11625 -1.3 -8.5 S41 family peptidase compare
HMPREF1058_RS02480 -1.3 -3.8 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS07195 -1.3 -2.4 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS20495 -1.3 -4.5 hypothetical protein compare
HMPREF1058_RS10835 -1.3 -3.6 UDP-galactopyranose mutase compare
HMPREF1058_RS17045 -1.3 -2.6 hypothetical protein compare
HMPREF1058_RS01405 -1.2 -5.0 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS14285 -1.2 -2.4 DUF5056 domain-containing protein compare
HMPREF1058_RS09700 -1.2 -2.4 methionine--tRNA ligase compare
HMPREF1058_RS14545 -1.2 -6.7 2-isopropylmalate synthase compare
HMPREF1058_RS14790 -1.2 -7.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS09590 -1.2 -4.3 hypothetical protein compare
HMPREF1058_RS15885 -1.2 -5.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS08770 -1.2 -3.7 cupin domain-containing protein compare
HMPREF1058_RS06330 -1.2 -2.6 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS00595 -1.2 -2.3 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS01395 -1.2 -4.8 cobyric acid synthase compare
HMPREF1058_RS15395 -1.2 -1.5 dihydroorotase compare
HMPREF1058_RS18340 -1.2 -2.3 hypothetical protein compare
HMPREF1058_RS01550 -1.2 -4.8 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS04530 -1.2 -1.0 hypothetical protein compare
HMPREF1058_RS17535 -1.2 -1.1 IS21-like element helper ATPase IstB compare
HMPREF1058_RS01555 -1.2 -3.5 cobalt-precorrin-5B (C(1))-methyltransferase compare
HMPREF1058_RS08025 -1.2 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS16510 -1.2 -2.1 methylmalonyl-CoA epimerase compare
HMPREF1058_RS13515 -1.2 -7.2 MFS transporter compare
HMPREF1058_RS14830 -1.1 -1.7 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS08830 -1.1 -4.8 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS10290 -1.1 -3.4 hypothetical protein compare
HMPREF1058_RS01575 -1.1 -5.6 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS14565 -1.1 -6.9 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS16070 -1.1 -4.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01390 -1.1 -3.3 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS11310 -1.1 -3.6 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS13655 -1.1 -7.3 cardiolipin synthase compare
HMPREF1058_RS06560 -1.1 -5.0 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS09685 -1.1 -6.2 tetratricopeptide repeat protein compare
HMPREF1058_RS17050 -1.1 -4.3 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS17390 -1.1 -2.1 HU family DNA-binding protein compare
HMPREF1058_RS06170 -1.1 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS02495 -1.1 -4.6 acyl-CoA dehydrogenase family protein compare
HMPREF1058_RS04035 -1.1 -2.2 hypothetical protein compare
HMPREF1058_RS00700 -1.1 -4.1 DUF4831 family protein compare
HMPREF1058_RS08645 -1.1 -5.0 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS09675 -1.1 -2.8 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS16815 -1.1 -5.8 dihydroxy-acid dehydratase compare
HMPREF1058_RS08640 -1.0 -1.5 acetylornithine carbamoyltransferase compare
HMPREF1058_RS15880 -1.0 -6.1 histidinol-phosphate transaminase compare
HMPREF1058_RS02970 -1.0 -2.8 DNA mismatch repair endonuclease MutL compare
HMPREF1058_RS04910 -1.0 -2.1 hypothetical protein compare
HMPREF1058_RS14795 -1.0 -3.5 prephenate dehydratase compare
HMPREF1058_RS01545 -1.0 -2.2 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1058_RS10955 -1.0 -3.6 phosphatase PAP2 family protein compare
HMPREF1058_RS08325 -1.0 -3.1 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS17950 -1.0 -3.7 biotin synthase BioB compare
HMPREF1058_RS01540 -1.0 -4.4 precorrin-3B C(17)-methyltransferase compare
HMPREF1058_RS14195 -1.0 -2.6 DUF1573 domain-containing protein compare
HMPREF1058_RS05780 -1.0 -4.8 PD40 domain-containing protein compare
HMPREF1058_RS13730 -1.0 -2.0 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS14770 -1.0 -3.5 prephenate dehydrogenase compare
HMPREF1058_RS16065 -1.0 -4.0 DUF1016 family protein compare
HMPREF1058_RS09585 -1.0 -6.4 argininosuccinate lyase compare
HMPREF1058_RS10495 -0.9 -1.5 rhomboid family intramembrane serine protease compare
HMPREF1058_RS21660 -0.9 -1.6 hypothetical protein compare
HMPREF1058_RS16760 -0.9 -1.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS19020 -0.9 -1.7 hypothetical protein compare
HMPREF1058_RS10910 -0.9 -7.0 glycosyltransferase family 39 protein compare
HMPREF1058_RS06175 -0.9 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS16440 -0.9 -2.5 endonuclease MutS2 compare
HMPREF1058_RS07840 -0.9 -1.7 hypothetical protein compare
HMPREF1058_RS16255 -0.9 -4.2 isochorismate synthase compare
HMPREF1058_RS13540 -0.9 -7.2 TonB-dependent receptor compare
HMPREF1058_RS09750 -0.9 -2.7 glycosyltransferase compare
HMPREF1058_RS11490 -0.9 -2.0 redox-regulated ATPase YchF compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Pectin from citrus peel across organisms