Experiment set10S206 for Phocaeicola vulgatus CL09T03C04

Compare to:

(+)-Arabinogalactan; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS08850 -4.6 -9.7 N-acetyltransferase compare
HMPREF1058_RS15885 -4.5 -8.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14770 -4.3 -7.2 prephenate dehydrogenase compare
HMPREF1058_RS14545 -4.3 -11.0 2-isopropylmalate synthase compare
HMPREF1058_RS10720 -4.2 -5.7 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS08640 -4.1 -2.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS15870 -4.1 -9.0 ATP phosphoribosyltransferase compare
HMPREF1058_RS09675 -4.0 -5.1 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS08645 -3.9 -11.3 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS07180 -3.9 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS08830 -3.9 -5.6 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS12105 -3.8 -5.3 shikimate kinase compare
HMPREF1058_RS14795 -3.8 -6.6 prephenate dehydratase compare
HMPREF1058_RS07200 -3.8 -8.7 tryptophan synthase subunit alpha compare
HMPREF1058_RS14730 -3.8 -9.5 threonine synthase compare
HMPREF1058_RS08840 -3.7 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14785 -3.7 -7.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS12115 -3.7 -9.0 acetylglutamate kinase compare
HMPREF1058_RS14565 -3.6 -12.5 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS09585 -3.6 -16.2 argininosuccinate lyase compare
HMPREF1058_RS12780 -3.6 -8.8 M20 family metallo-hydrolase compare
HMPREF1058_RS14725 -3.5 -9.6 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14550 -3.5 -12.0 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14720 -3.5 -16.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS10075 -3.5 -14.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS10080 -3.5 -15.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS15435 -3.4 -7.7 hypothetical protein compare
HMPREF1058_RS16820 -3.4 -9.2 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS07185 -3.3 -10.9 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS10995 -3.3 -8.7 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS06175 -3.3 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS16815 -3.3 -10.8 dihydroxy-acid dehydratase compare
HMPREF1058_RS07170 -3.3 -9.0 tryptophan synthase subunit beta compare
HMPREF1058_RS08845 -3.3 -8.5 argininosuccinate synthase compare
HMPREF1058_RS08025 -3.3 -7.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS14555 -3.2 -1.3 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS14215 -3.2 -3.6 (d)CMP kinase compare
HMPREF1058_RS06170 -3.2 -4.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS17815 -3.2 -3.1 MFS transporter compare
HMPREF1058_RS11270 -3.2 -12.1 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS14610 -3.2 -14.3 adenylosuccinate synthase compare
HMPREF1058_RS15660 -3.1 -13.5 galactokinase compare
HMPREF1058_RS15875 -3.1 -8.8 histidinol dehydrogenase compare
HMPREF1058_RS14790 -3.1 -13.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS08650 -3.1 -7.1 glutamate 5-kinase compare
HMPREF1058_RS16730 -3.0 -3.9 chorismate synthase compare
HMPREF1058_RS07175 -3.0 -9.5 anthranilate synthase component I family protein compare
HMPREF1058_RS09700 -3.0 -2.0 methionine--tRNA ligase compare
HMPREF1058_RS06180 -3.0 -6.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS11925 -3.0 -1.7 DUF2975 domain-containing protein compare
HMPREF1058_RS11040 -2.9 -4.1 polysaccharide deacetylase family protein compare
HMPREF1058_RS08855 -2.9 -7.3 arginine repressor compare
HMPREF1058_RS12490 -2.9 -1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS03000 -2.9 -7.7 IMP dehydrogenase compare
HMPREF1058_RS00565 -2.9 -8.9 hemolysin III family protein compare
HMPREF1058_RS02170 -2.9 -4.8 hypothetical protein compare
HMPREF1058_RS14560 -2.8 -9.8 2-isopropylmalate synthase compare
HMPREF1058_RS04300 -2.8 -2.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS18870 -2.8 -1.0 hypothetical protein compare
HMPREF1058_RS09610 -2.8 -6.4 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS03800 -2.8 -7.2 serine hydroxymethyltransferase compare
HMPREF1058_RS08535 -2.8 -2.2 elongation factor P compare
HMPREF1058_RS15880 -2.7 -9.4 histidinol-phosphate transaminase compare
HMPREF1058_RS01390 -2.7 -4.5 pyridoxal phosphate-dependent class II aminotransferase compare
HMPREF1058_RS12505 -2.7 -5.2 RNA polymerase factor sigma-54 compare
HMPREF1058_RS16835 -2.7 -6.7 ketol-acid reductoisomerase compare
HMPREF1058_RS09680 -2.7 -2.7 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS07195 -2.7 -2.6 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS07190 -2.7 -5.5 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS09685 -2.6 -10.4 tetratricopeptide repeat protein compare
HMPREF1058_RS06195 -2.6 -4.0 diaminopimelate decarboxylase compare
HMPREF1058_RS15075 -2.6 -10.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS06190 -2.6 -4.4 aspartate kinase compare
HMPREF1058_RS12110 -2.6 -11.1 biosynthetic arginine decarboxylase compare
HMPREF1058_RS02405 -2.6 -14.6 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS02410 -2.6 -15.1 methylmalonyl-CoA mutase compare
HMPREF1058_RS14490 -2.6 -10.0 S9 family peptidase compare
HMPREF1058_RS16825 -2.5 -5.4 acetolactate synthase small subunit compare
HMPREF1058_RS02975 -2.5 -1.6 hypothetical protein compare
HMPREF1058_RS16255 -2.5 -10.6 isochorismate synthase compare
HMPREF1058_RS09890 -2.4 -0.8 DUF3876 domain-containing protein compare
HMPREF1058_RS14920 -2.4 -10.4 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS04295 -2.4 -3.2 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS09745 -2.4 -6.5 glycosyltransferase compare
HMPREF1058_RS07955 -2.4 -13.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS16760 -2.4 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS13795 -2.4 -9.8 DUF4954 family protein compare
HMPREF1058_RS06980 -2.4 -3.2 sugar transferase compare
HMPREF1058_RS11625 -2.4 -11.0 S41 family peptidase compare
HMPREF1058_RS10820 -2.3 -11.2 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS11730 -2.3 -1.3 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS00515 -2.3 -5.6 YicC family protein compare
HMPREF1058_RS17050 -2.3 -7.7 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS16510 -2.3 -1.9 methylmalonyl-CoA epimerase compare
HMPREF1058_RS17060 -2.3 -5.9 HAD family hydrolase compare
HMPREF1058_RS09000 -2.3 -7.6 FecR domain-containing protein compare
HMPREF1058_RS17130 -2.2 -1.1 tetratricopeptide repeat protein compare
HMPREF1058_RS06165 -2.2 -4.8 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS07440 -2.2 -6.4 aspartate--ammonia ligase compare
HMPREF1058_RS15395 -2.2 -1.2 dihydroorotase compare
HMPREF1058_RS00700 -2.2 -6.9 DUF4831 family protein compare
HMPREF1058_RS04375 -2.2 -5.6 carbon-nitrogen hydrolase compare
HMPREF1058_RS13970 -2.2 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS12690 -2.2 -1.3 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS03970 -2.2 -1.7 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS15665 -2.2 -6.4 MFS transporter compare
HMPREF1058_RS02220 -2.2 -3.9 branched-chain amino acid aminotransferase compare
HMPREF1058_RS06310 -2.2 -5.0 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS17965 -2.1 -0.8 DUF452 family protein compare
HMPREF1058_RS10835 -2.1 -4.5 UDP-galactopyranose mutase compare
HMPREF1058_RS16495 -2.1 -1.2 biotin/lipoyl-binding protein compare
HMPREF1058_RS13730 -2.1 -2.7 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS12990 -2.1 -1.6 hypothetical protein compare
HMPREF1058_RS13965 -2.1 -1.3 hypothetical protein compare
HMPREF1058_RS05780 -2.1 -6.8 PD40 domain-containing protein compare
HMPREF1058_RS09445 -2.1 -0.7 tyrosine-type recombinase/integrase compare
HMPREF1058_RS01270 -2.1 -5.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1058_RS08835 -2.1 -6.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS03585 -2.1 -2.1 hypothetical protein compare
HMPREF1058_RS02755 -2.0 -3.4 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS09985 -2.0 -3.1 hypothetical protein compare
HMPREF1058_RS01745 -2.0 -1.4 PorT family protein compare
HMPREF1058_RS13655 -2.0 -11.4 cardiolipin synthase compare
HMPREF1058_RS17950 -2.0 -5.0 biotin synthase BioB compare
HMPREF1058_RS04065 -2.0 -0.7 VWA domain-containing protein compare
HMPREF1058_RS09775 -2.0 -0.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS08450 -2.0 -13.9 response regulator compare
HMPREF1058_RS17080 -2.0 -1.6 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS00590 -1.9 -2.6 hypothetical protein compare
HMPREF1058_RS21635 -1.9 -0.9 transcriptional regulator compare
HMPREF1058_RS08520 -1.9 -2.8 DUF59 domain-containing protein compare
HMPREF1058_RS14505 -1.9 -2.9 mechanosensitive ion channel compare
HMPREF1058_RS14220 -1.9 -3.3 energy transducer TonB compare
HMPREF1058_RS12070 -1.9 -3.2 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS19090 -1.9 -0.5 tRNA-Phe compare
HMPREF1058_RS05520 -1.9 -0.6 DUF4357 domain-containing protein compare
HMPREF1058_RS17820 -1.8 -4.0 energy-dependent translational throttle protein EttA compare
HMPREF1058_RS16750 -1.8 -1.8 shikimate dehydrogenase compare
HMPREF1058_RS16500 -1.8 -2.1 OadG family protein compare
HMPREF1058_RS17975 -1.8 -5.5 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS10270 -1.8 -2.1 hypothetical protein compare
HMPREF1058_RS14005 -1.8 -1.7 3-dehydroquinate synthase compare
HMPREF1058_RS01685 -1.8 -2.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS10540 -1.8 -10.7 glycoside hydrolase family 97 protein conserved
HMPREF1058_RS15375 -1.8 -0.8 DUF4369 domain-containing protein compare
HMPREF1058_RS02750 -1.8 -2.9 BamA/TamA family outer membrane protein compare
HMPREF1058_RS17955 -1.8 -4.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS11535 -1.8 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS04045 -1.8 -2.1 tetratricopeptide repeat protein compare
HMPREF1058_RS11910 -1.8 -7.0 DEAD/DEAH box helicase compare
HMPREF1058_RS08440 -1.8 -12.4 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS20295 -1.7 -1.6 hypothetical protein compare
HMPREF1058_RS11490 -1.7 -2.6 redox-regulated ATPase YchF compare
HMPREF1058_RS16250 -1.7 -6.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS07735 -1.7 -1.1 chloride channel protein compare
HMPREF1058_RS06350 -1.7 -3.6 SoxR reducing system RseC family protein compare
HMPREF1058_RS01690 -1.7 -5.4 sugar kinase compare
HMPREF1058_RS06335 -1.7 -5.4 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS07465 -1.7 -1.8 S26 family signal peptidase compare
HMPREF1058_RS14930 -1.7 -10.8 AraC family transcriptional regulator compare
HMPREF1058_RS16260 -1.7 -3.9 hotdog fold thioesterase compare
HMPREF1058_RS01385 -1.6 -5.9 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS09750 -1.6 -3.9 glycosyltransferase compare
HMPREF1058_RS0119335 -1.6 -1.1 site-specific integrase compare
HMPREF1058_RS18525 -1.6 -0.9 hypothetical protein compare
HMPREF1058_RS01460 -1.6 -1.4 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS08325 -1.6 -3.7 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS06560 -1.6 -5.8 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS06330 -1.6 -3.7 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS16845 -1.6 -3.3 SurA N-terminal domain-containing protein compare
HMPREF1058_RS07535 -1.6 -1.9 hypothetical protein compare
HMPREF1058_RS12455 -1.6 -1.0 dUTP diphosphatase compare
HMPREF1058_RS08445 -1.6 -11.6 TonB-dependent receptor compare
HMPREF1058_RS17040 -1.6 -3.1 NTP transferase domain-containing protein compare
HMPREF1058_RS14125 -1.6 -9.4 magnesium transporter compare
HMPREF1058_RS21210 -1.6 -1.5 hypothetical protein compare
HMPREF1058_RS10955 -1.6 -4.6 phosphatase PAP2 family protein compare
HMPREF1058_RS19200 -1.6 -1.8 hypothetical protein compare
HMPREF1058_RS11890 -1.6 -2.6 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS14200 -1.6 -5.3 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS09180 -1.5 -3.6 hypothetical protein compare
HMPREF1058_RS01665 -1.5 -3.1 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS02800 -1.5 -3.8 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS04025 -1.5 -5.8 hypothetical protein compare
HMPREF1058_RS05300 -1.5 -1.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS15000 -1.5 -3.3 hypothetical protein compare
HMPREF1058_RS10145 -1.5 -2.2 hypothetical protein compare
HMPREF1058_RS16505 -1.5 -2.9 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS05925 -1.5 -0.9 DUF5024 domain-containing protein compare
HMPREF1058_RS15380 -1.5 -7.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS09590 -1.5 -4.3 hypothetical protein compare
HMPREF1058_RS14605 -1.5 -3.9 transcriptional repressor compare
HMPREF1058_RS17205 -1.5 -0.8 DUF4199 domain-containing protein compare
HMPREF1058_RS05145 -1.5 -4.4 ATP-binding protein compare
HMPREF1058_RS05550 -1.5 -2.6 relaxase/mobilization nuclease domain-containing protein compare
HMPREF1058_RS04950 -1.5 -1.0 hypothetical protein compare
HMPREF1058_RS04070 -1.5 -1.0 hypothetical protein compare
HMPREF1058_RS14025 -1.5 -4.3 RsmD family RNA methyltransferase compare
HMPREF1058_RS03535 -1.5 -0.7 UvrD-helicase domain-containing protein compare
HMPREF1058_RS08500 -1.5 -2.1 CidA/LrgA family protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source (+)-Arabinogalactan in Phocaeicola vulgatus CL09T03C04

For carbon source (+)-Arabinogalactan across organisms