Experiment set10S203 for Phocaeicola vulgatus CL09T03C04

Compare to:

Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS06640 +4.0 17.4 chain-length determining protein compare
HMPREF1058_RS06625 +3.8 13.3 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS06645 +3.8 21.1 SLBB domain-containing protein compare
HMPREF1058_RS03580 +3.6 3.6 UpxY family transcription antiterminator compare
HMPREF1058_RS06545 +3.4 16.0 transcriptional regulator compare
HMPREF1058_RS16210 +3.2 6.7 hypothetical protein compare
HMPREF1058_RS06520 +3.2 10.3 capsular polysaccharide synthesis protein compare
HMPREF1058_RS06505 +3.2 8.5 LicD family protein compare
HMPREF1058_RS06495 +3.1 15.0 DUF1972 domain-containing protein compare
HMPREF1058_RS06540 +2.9 3.1 hypothetical protein compare
HMPREF1058_RS03630 +2.9 6.5 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS06530 +2.8 10.2 flippase compare
HMPREF1058_RS06525 +2.8 13.3 hypothetical protein compare
HMPREF1058_RS06510 +2.8 7.3 ornithine cyclodeaminase compare
HMPREF1058_RS0119785 +2.7 11.7 hypothetical protein compare
HMPREF1058_RS0119790 +2.6 6.3 glycosyltransferase compare
HMPREF1058_RS06515 +2.1 8.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS16855 +2.1 1.8 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS06535 +2.1 3.3 hypothetical protein compare
HMPREF1058_RS06500 +1.9 6.4 acyltransferase compare
HMPREF1058_RS04545 +1.8 5.2 hypothetical protein compare
HMPREF1058_RS16215 +1.8 2.4 hypothetical protein compare
HMPREF1058_RS03615 +1.8 5.7 glycosyltransferase compare
HMPREF1058_RS10230 +1.6 3.0 hypothetical protein compare
HMPREF1058_RS16185 +1.6 4.7 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS03130 +1.6 4.6 DUF177 domain-containing protein compare
HMPREF1058_RS03085 +1.6 1.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS16180 +1.5 4.2 YjbH domain-containing protein compare
HMPREF1058_RS02150 +1.5 7.6 DUF3440 domain-containing protein compare
HMPREF1058_RS17880 +1.5 2.9 diacylglycerol kinase family protein compare
HMPREF1058_RS17805 +1.4 4.2 HAD family hydrolase compare
HMPREF1058_RS15665 +1.4 5.5 MFS transporter compare
HMPREF1058_RS21475 +1.3 0.8 smalltalk protein compare
HMPREF1058_RS05125 +1.3 3.5 hypothetical protein compare
HMPREF1058_RS03275 +1.3 2.0 hypothetical protein compare
HMPREF1058_RS15320 +1.3 3.1 hypothetical protein compare
HMPREF1058_RS02155 +1.3 4.9 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS03625 +1.2 2.2 polysaccharide pyruvyl transferase family protein compare
HMPREF1058_RS18565 +1.2 1.5 hypothetical protein compare
HMPREF1058_RS06425 +1.2 1.6 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS12805 +1.2 3.7 RNA polymerase sigma factor compare
HMPREF1058_RS03490 +1.2 2.8 glycosyltransferase family 4 protein compare
HMPREF1058_RS12525 +1.2 4.2 Na/Pi cotransporter family protein compare
HMPREF1058_RS02005 +1.2 2.2 hypothetical protein compare
HMPREF1058_RS05430 +1.2 1.4 ferritin compare
HMPREF1058_RS14075 +1.1 2.4 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS02000 +1.1 2.3 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS02145 +1.1 2.9 hypothetical protein compare
HMPREF1058_RS03450 +1.1 1.4 hypothetical protein compare
HMPREF1058_RS21635 +1.1 0.8 transcriptional regulator compare
HMPREF1058_RS15305 +1.1 4.1 hypothetical protein compare
HMPREF1058_RS06005 +1.1 1.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
HMPREF1058_RS03495 +1.1 2.5 YjbH domain-containing protein compare
HMPREF1058_RS10160 +1.1 1.3 hypothetical protein compare
HMPREF1058_RS18170 +1.1 1.4 MobC family plasmid mobilization relaxosome protein compare
HMPREF1058_RS03215 +1.1 4.9 AhpC/TSA family protein compare
HMPREF1058_RS14400 +1.1 2.5 nitroreductase family protein compare
HMPREF1058_RS09865 +1.1 1.1 DUF3408 domain-containing protein compare
HMPREF1058_RS16175 +1.1 2.7 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS01930 +1.1 3.0 type II toxin-antitoxin system HigB family toxin compare
HMPREF1058_RS03620 +1.1 4.0 glycosyltransferase compare
HMPREF1058_RS04255 +1.0 3.2 MgtC/SapB family protein compare
HMPREF1058_RS06365 +1.0 2.9 MFS transporter compare
HMPREF1058_RS02970 +1.0 2.0 DNA mismatch repair endonuclease MutL compare
HMPREF1058_RS04560 +1.0 2.4 hypothetical protein compare
HMPREF1058_RS03295 +1.0 0.8 sulfur carrier protein ThiS compare
HMPREF1058_RS14270 +1.0 4.7 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS05005 +1.0 2.0 hypothetical protein compare
HMPREF1058_RS0119320 +1.0 1.4 hypothetical protein compare
HMPREF1058_RS09795 +1.0 1.2 DUF1896 domain-containing protein compare
HMPREF1058_RS01445 +1.0 0.9 cysteine-rich CWC family protein compare
HMPREF1058_RS21140 +1.0 3.1 ISAs1 family transposase compare
HMPREF1058_RS03590 +1.0 3.2 hypothetical protein compare
HMPREF1058_RS09440 +1.0 2.9 ribosome-associated translation inhibitor RaiA compare
HMPREF1058_RS05410 +1.0 2.2 RNA polymerase sigma factor compare
HMPREF1058_RS13045 +1.0 2.1 hypothetical protein compare
HMPREF1058_RS03940 +1.0 3.2 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS10920 +0.9 1.8 viroplasmin family protein compare
HMPREF1058_RS18970 +0.9 1.6 hypothetical protein compare
HMPREF1058_RS16205 +0.9 2.3 DUF3987 domain-containing protein compare
HMPREF1058_RS05695 +0.9 1.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS03000 +0.9 4.0 IMP dehydrogenase compare
HMPREF1058_RS16740 +0.9 3.4 TPM domain-containing protein compare
HMPREF1058_RS21590 +0.9 0.8 hypothetical protein compare
HMPREF1058_RS04520 +0.9 0.9 hypothetical protein compare
HMPREF1058_RS01605 +0.9 3.2 MBL fold metallo-hydrolase compare
HMPREF1058_RS06780 +0.9 2.2 glycosyltransferase family 2 protein compare
HMPREF1058_RS05720 +0.9 1.7 hypothetical protein compare
HMPREF1058_RS04290 +0.9 3.6 DUF1015 domain-containing protein compare
HMPREF1058_RS01635 +0.9 2.5 hypothetical protein compare
HMPREF1058_RS16245 +0.9 2.2 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS05725 +0.9 1.4 hypothetical protein compare
HMPREF1058_RS15545 +0.9 2.5 50S ribosomal protein L11 methyltransferase compare
HMPREF1058_RS16525 +0.9 1.7 hypothetical protein compare
HMPREF1058_RS03605 +0.9 2.8 glycosyltransferase family 2 protein compare
HMPREF1058_RS05465 +0.9 1.9 DNA-binding protein compare
HMPREF1058_RS03980 +0.9 1.0 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS18155 +0.9 1.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS09665 +0.9 2.8 class I SAM-dependent methyltransferase compare
HMPREF1058_RS02320 +0.9 1.3 hypothetical protein compare
HMPREF1058_RS01665 +0.9 2.2 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS15315 +0.9 1.7 FimB/Mfa2 family fimbrial subunit compare
HMPREF1058_RS09785 +0.9 1.2 DUF3945 domain-containing protein compare
HMPREF1058_RS16155 +0.9 3.5 polysaccharide pyruvyl transferase family protein compare
HMPREF1058_RS04950 +0.9 0.7 hypothetical protein compare
HMPREF1058_RS03610 +0.9 3.4 glycosyltransferase family 4 protein compare
HMPREF1058_RS14660 +0.8 2.9 TolC family protein compare
HMPREF1058_RS01820 +0.8 1.2 hypothetical protein compare
HMPREF1058_RS07960 +0.8 6.0 response regulator compare
HMPREF1058_RS09940 +0.8 1.9 lysozyme compare
HMPREF1058_RS00140 +0.8 2.8 L-rhamnose mutarotase compare
HMPREF1058_RS06805 +0.8 1.9 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1058_RS17670 +0.8 2.5 hypothetical protein compare
HMPREF1058_RS20355 +0.8 1.6 hypothetical protein compare
HMPREF1058_RS12810 +0.8 3.4 VanZ family protein compare
HMPREF1058_RS18420 +0.8 2.9 DUF3805 domain-containing protein compare
HMPREF1058_RS19120 +0.8 0.6 hypothetical protein compare
HMPREF1058_RS16160 +0.8 3.0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
HMPREF1058_RS02785 +0.8 2.4 hypothetical protein compare
HMPREF1058_RS13900 +0.8 2.0 YraN family protein compare
HMPREF1058_RS15520 +0.8 1.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS05925 +0.8 0.9 DUF5024 domain-containing protein compare
HMPREF1058_RS04870 +0.8 2.5 RhsIA family immunity protein compare
HMPREF1058_RS21050 +0.8 1.1 transposase compare
HMPREF1058_RS16715 +0.8 0.5 hypothetical protein compare
HMPREF1058_RS04410 +0.8 1.0 porin family protein compare
HMPREF1058_RS04235 +0.8 1.2 NUDIX hydrolase compare
HMPREF1058_RS01955 +0.8 1.7 hypothetical protein compare
HMPREF1058_RS20410 +0.8 1.8 hypothetical protein compare
HMPREF1058_RS08000 +0.8 1.1 hypothetical protein compare
HMPREF1058_RS11730 +0.8 1.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS16385 +0.8 1.8 TrpB-like pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS05845 +0.8 3.3 C40 family peptidase compare
HMPREF1058_RS07620 +0.8 4.0 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS01500 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS01205 +0.8 1.2 methyltransferase compare
HMPREF1058_RS07995 +0.8 2.3 hypothetical protein compare
HMPREF1058_RS03540 +0.8 1.2 sensor histidine kinase compare
HMPREF1058_RS04160 +0.8 1.3 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS01490 +0.8 2.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
HMPREF1058_RS07340 +0.8 1.8 HU family DNA-binding protein compare
HMPREF1058_RS01970 +0.8 2.1 hypothetical protein compare
HMPREF1058_RS05540 +0.7 1.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS10175 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS07555 +0.7 2.5 DUF3737 family protein compare
HMPREF1058_RS04530 +0.7 0.8 hypothetical protein compare
HMPREF1058_RS16140 +0.7 2.7 hypothetical protein compare
HMPREF1058_RS09860 +0.7 1.0 DUF3408 domain-containing protein compare
HMPREF1058_RS01075 +0.7 0.9 site-specific integrase compare
HMPREF1058_RS18470 +0.7 2.9 glycosyltransferase compare
HMPREF1058_RS05800 +0.7 1.3 DUF4858 domain-containing protein compare
HMPREF1058_RS21405 +0.7 0.6 hypothetical protein compare
HMPREF1058_RS18460 +0.7 2.2 glycosyltransferase compare
HMPREF1058_RS15310 +0.7 3.1 Mfa1 family fimbria major subunit compare
HMPREF1058_RS13340 +0.7 1.7 hypothetical protein compare
HMPREF1058_RS17170 +0.7 3.5 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS06615 +0.7 2.1 GDP-mannose 4,6-dehydratase compare
HMPREF1058_RS07465 +0.7 1.0 S26 family signal peptidase compare
HMPREF1058_RS0119720 +0.7 2.0 hypothetical protein compare
HMPREF1058_RS03935 +0.7 2.5 hypothetical protein compare
HMPREF1058_RS17090 +0.7 2.4 hypothetical protein compare
HMPREF1058_RS03505 +0.7 1.5 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS0120135 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS03770 +0.7 2.8 RNA polymerase sigma factor compare
HMPREF1058_RS03765 +0.7 3.0 trimeric intracellular cation channel family protein compare
HMPREF1058_RS03950 +0.7 2.4 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS21210 +0.7 0.9 hypothetical protein compare
HMPREF1058_RS01960 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS01830 +0.7 1.7 DUF882 domain-containing protein compare
HMPREF1058_RS11590 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS16955 +0.7 2.2 cold shock domain-containing protein compare
HMPREF1058_RS01250 +0.7 3.4 DUF4738 domain-containing protein compare
HMPREF1058_RS17460 +0.7 3.3 nucleotidyl transferase AbiEii/AbiGii toxin family protein compare
HMPREF1058_RS11375 +0.7 0.5 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS21250 +0.7 1.9 hypothetical protein compare
HMPREF1058_RS07725 +0.7 2.1 NigD-like N-terminal domain-containing protein compare
HMPREF1058_RS05530 +0.7 1.6 site-specific DNA-methyltransferase compare
HMPREF1058_RS06060 +0.7 2.5 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS06185 +0.7 1.2 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS16775 +0.7 2.4 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS04085 +0.7 2.5 HU family DNA-binding protein compare
HMPREF1058_RS01950 +0.7 3.1 phosphoadenosine phosphosulfate reductase family protein compare
HMPREF1058_RS13090 +0.7 0.9 UpxY family transcription antiterminator compare
HMPREF1058_RS15405 +0.7 2.9 outer membrane beta-barrel protein compare
HMPREF1058_RS20790 +0.7 0.6 hypothetical protein compare
HMPREF1058_RS05130 +0.7 1.6 site-specific integrase compare
HMPREF1058_RS18655 +0.7 2.9 F0F1 ATP synthase subunit beta compare
HMPREF1058_RS03575 +0.7 1.9 DUF2442 domain-containing protein compare
HMPREF1058_RS09775 +0.7 0.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10825 +0.7 3.1 glycosyltransferase family 9 protein compare
HMPREF1058_RS17710 +0.6 4.1 HAMP domain-containing histidine kinase compare
HMPREF1058_RS06795 +0.6 1.9 response regulator compare
HMPREF1058_RS02125 +0.6 2.9 PorT family protein compare
HMPREF1058_RS16150 +0.6 2.4 glycosyltransferase compare
HMPREF1058_RS09990 +0.6 2.8 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS07195 +0.6 1.3 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS21345 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS05590 +0.6 2.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS08500 +0.6 1.3 CidA/LrgA family protein compare
HMPREF1058_RS07485 +0.6 1.5 PqqD family protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Arabinoxylan (Rye Flour) in Phocaeicola vulgatus CL09T03C04

For carbon source Arabinoxylan (Rye Flour) across organisms