Experiment set10S198 for Phocaeicola vulgatus CL09T03C04

Compare to:

Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS03580 +1.2 2.7 UpxY family transcription antiterminator compare
HMPREF1058_RS06640 +1.1 7.2 chain-length determining protein compare
HMPREF1058_RS06625 +1.1 5.3 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS15565 +1.0 8.5 hypothetical protein compare
HMPREF1058_RS06645 +1.0 7.6 SLBB domain-containing protein compare
HMPREF1058_RS0119260 +1.0 1.3 hypothetical protein compare
HMPREF1058_RS06545 +1.0 6.9 transcriptional regulator compare
HMPREF1058_RS16210 +1.0 3.2 hypothetical protein compare
HMPREF1058_RS17650 +1.0 4.0 response regulator transcription factor compare
HMPREF1058_RS00590 +0.9 2.6 hypothetical protein compare
HMPREF1058_RS06945 +0.9 1.8 tRNA-Thr compare
HMPREF1058_RS17700 +0.9 2.8 chaperone modulator CbpM compare
HMPREF1058_RS21475 +0.9 1.0 smalltalk protein compare
HMPREF1058_RS03545 +0.9 3.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS00700 +0.9 5.0 DUF4831 family protein compare
HMPREF1058_RS07540 +0.9 1.8 acetyltransferase compare
HMPREF1058_RS05780 +0.9 5.5 PD40 domain-containing protein compare
HMPREF1058_RS01075 +0.9 1.6 site-specific integrase compare
HMPREF1058_RS09915 +0.9 2.3 conjugative transposon protein TraM compare
HMPREF1058_RS06505 +0.8 4.4 LicD family protein compare
HMPREF1058_RS04575 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS08355 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS03505 +0.8 2.2 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS06495 +0.8 5.7 DUF1972 domain-containing protein compare
HMPREF1058_RS06520 +0.8 4.2 capsular polysaccharide synthesis protein compare
HMPREF1058_RS18050 +0.8 2.0 DUF4492 domain-containing protein compare
HMPREF1058_RS06925 +0.7 2.4 glutamate synthase subunit beta compare
HMPREF1058_RS16215 +0.7 2.2 hypothetical protein compare
HMPREF1058_RS0119785 +0.7 4.6 hypothetical protein compare
HMPREF1058_RS11925 +0.7 1.0 DUF2975 domain-containing protein compare
HMPREF1058_RS03270 +0.7 2.1 flavodoxin family protein compare
HMPREF1058_RS03630 +0.7 2.7 WecB/TagA/CpsF family glycosyltransferase compare
HMPREF1058_RS15570 +0.7 6.1 hypothetical protein compare
HMPREF1058_RS16855 +0.7 0.9 LPS export ABC transporter periplasmic protein LptC compare
HMPREF1058_RS06525 +0.7 5.2 hypothetical protein compare
HMPREF1058_RS17880 +0.7 1.4 diacylglycerol kinase family protein compare
HMPREF1058_RS07960 +0.7 5.9 response regulator compare
HMPREF1058_RS16250 +0.7 3.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS20500 +0.7 2.7 YbaN family protein compare
HMPREF1058_RS05915 +0.6 1.6 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS01605 +0.6 2.9 MBL fold metallo-hydrolase compare
HMPREF1058_RS04445 +0.6 1.0 porin family protein compare
HMPREF1058_RS06510 +0.6 3.1 ornithine cyclodeaminase compare
HMPREF1058_RS0119790 +0.6 2.9 glycosyltransferase compare
HMPREF1058_RS17205 +0.6 1.2 DUF4199 domain-containing protein compare
HMPREF1058_RS09620 +0.6 2.8 hypothetical protein compare
HMPREF1058_RS16400 +0.6 3.5 DUF4738 domain-containing protein compare
HMPREF1058_RS03245 +0.6 1.0 thiamine phosphate synthase compare
HMPREF1058_RS13305 +0.6 2.9 NADH-quinone oxidoreductase subunit NuoK compare
HMPREF1058_RS17920 +0.6 2.1 formate-dependent phosphoribosylglycinamide formyltransferase compare
HMPREF1058_RS05360 +0.6 1.3 helix-turn-helix domain-containing protein compare
HMPREF1058_RS10135 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS03950 +0.6 1.9 type I restriction enzyme HsdR N-terminal domain-containing protein compare
HMPREF1058_RS17565 +0.6 1.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS01265 +0.6 1.6 FHA domain-containing protein compare
HMPREF1058_RS12590 +0.6 2.8 transposase compare
HMPREF1058_RS03290 +0.6 2.0 thiamine phosphate synthase compare
HMPREF1058_RS17540 +0.6 2.4 6-bladed beta-propeller compare
HMPREF1058_RS06530 +0.6 3.5 flippase compare
HMPREF1058_RS05960 +0.6 3.0 YjbQ family protein compare
HMPREF1058_RS21010 +0.6 2.3 MGMT family protein compare
HMPREF1058_RS01180 +0.5 2.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS03450 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS07555 +0.5 2.5 DUF3737 family protein compare
HMPREF1058_RS21490 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS03615 +0.5 3.4 glycosyltransferase compare
HMPREF1058_RS05760 +0.5 2.5 GAF domain-containing protein compare
HMPREF1058_RS03130 +0.5 2.5 DUF177 domain-containing protein compare
HMPREF1058_RS15760 +0.5 1.5 ABC transporter ATP-binding protein compare
HMPREF1058_RS14805 +0.5 2.9 DJ-1/PfpI family protein compare
HMPREF1058_RS03050 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS0119735 +0.5 2.1 hypothetical protein compare
HMPREF1058_RS03275 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS21380 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS05015 +0.5 1.8 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS16190 +0.5 2.0 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS12490 +0.5 1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS04805 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS18635 +0.5 1.0 PepSY-like domain-containing protein compare
HMPREF1058_RS14075 +0.5 1.5 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS04695 +0.5 1.9 HIT family protein compare
HMPREF1058_RS04520 +0.5 0.8 hypothetical protein compare
HMPREF1058_RS03095 +0.5 1.4 RNA-binding protein compare
HMPREF1058_RS15405 +0.5 2.6 outer membrane beta-barrel protein compare
HMPREF1058_RS15910 +0.5 2.1 thioredoxin compare
HMPREF1058_RS18670 +0.5 3.4 F0F1 ATP synthase subunit A compare
HMPREF1058_RS04185 +0.5 2.5 hypothetical protein compare
HMPREF1058_RS05250 +0.5 1.4 transposase compare
HMPREF1058_RS05210 +0.5 1.1 SDR family oxidoreductase compare
HMPREF1058_RS16575 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS07090 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS06535 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS04155 +0.5 2.4 glycine betaine/L-proline ABC transporter ATP-binding protein compare
HMPREF1058_RS16165 +0.5 2.6 glycoside hydrolase family 16 protein compare
HMPREF1058_RS13900 +0.5 1.6 YraN family protein compare
HMPREF1058_RS09870 +0.5 1.7 DUF3408 domain-containing protein compare
HMPREF1058_RS05935 +0.5 3.1 bifunctional nuclease family protein compare
HMPREF1058_RS18680 +0.5 2.0 F0F1 ATP synthase subunit B compare
HMPREF1058_RS12805 +0.5 2.8 RNA polymerase sigma factor compare
HMPREF1058_RS00560 +0.5 1.1 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS06060 +0.5 2.3 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS0119615 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS09865 +0.5 0.9 DUF3408 domain-containing protein compare
HMPREF1058_RS03930 +0.5 1.8 ABC transporter permease compare
HMPREF1058_RS17155 +0.5 1.4 dCMP deaminase family protein compare
HMPREF1058_RS06600 +0.5 1.2 DedA family protein compare
HMPREF1058_RS06540 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS01515 +0.4 2.6 1-deoxy-D-xylulose-5-phosphate synthase compare
HMPREF1058_RS05845 +0.4 2.6 C40 family peptidase compare
HMPREF1058_RS03295 +0.4 0.5 sulfur carrier protein ThiS compare
HMPREF1058_RS02510 +0.4 2.2 DUF2027 domain-containing protein compare
HMPREF1058_RS09060 +0.4 2.7 hypothetical protein compare
HMPREF1058_RS10980 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS01050 +0.4 2.6 hypothetical protein compare
HMPREF1058_RS05885 +0.4 2.4 3'-5' exonuclease domain-containing protein 2 compare
HMPREF1058_RS05820 +0.4 1.7 nicotinamide mononucleotide transporter compare
HMPREF1058_RS18095 +0.4 1.3 response regulator transcription factor compare
HMPREF1058_RS01615 +0.4 0.5 tRNA-Lys compare
HMPREF1058_RS18170 +0.4 0.9 MobC family plasmid mobilization relaxosome protein compare
HMPREF1058_RS05215 +0.4 2.5 GtrA family protein compare
HMPREF1058_RS03445 +0.4 1.9 hypothetical protein compare
HMPREF1058_RS01250 +0.4 2.7 DUF4738 domain-containing protein compare
HMPREF1058_RS05405 +0.4 1.4 6-phosphofructokinase compare
HMPREF1058_RS18655 +0.4 2.6 F0F1 ATP synthase subunit beta compare
HMPREF1058_RS10175 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS07765 +0.4 2.0 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS05035 +0.4 3.1 C69 family dipeptidase compare
HMPREF1058_RS0119830 +0.4 0.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS18760 +0.4 2.0 iron-containing alcohol dehydrogenase compare
HMPREF1058_RS10400 +0.4 2.7 hypothetical protein compare
HMPREF1058_RS13250 +0.4 0.6 DUF3853 family protein compare
HMPREF1058_RS03625 +0.4 1.8 polysaccharide pyruvyl transferase family protein compare
HMPREF1058_RS06045 +0.4 2.5 large-conductance mechanosensitive channel protein MscL compare
HMPREF1058_RS01530 +0.4 1.5 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS04410 +0.4 0.8 porin family protein compare
HMPREF1058_RS05890 +0.4 2.7 class I SAM-dependent rRNA methyltransferase compare
HMPREF1058_RS02670 +0.4 2.7 Bro-N domain-containing protein compare
HMPREF1058_RS18835 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS05525 +0.4 2.1 toll/interleukin-1 receptor domain-containing protein compare
HMPREF1058_RS05895 +0.4 1.7 class I SAM-dependent methyltransferase compare
HMPREF1058_RS17045 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS02200 +0.4 1.0 BlaI/MecI/CopY family transcriptional regulator compare
HMPREF1058_RS13965 +0.4 0.8 hypothetical protein compare
HMPREF1058_RS04380 +0.4 2.3 DUF4251 domain-containing protein compare
HMPREF1058_RS14700 +0.4 1.9 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16950 +0.4 2.0 ribonuclease Z compare
HMPREF1058_RS06040 +0.4 1.8 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS03355 +0.4 2.0 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS04950 +0.4 0.9 hypothetical protein compare
HMPREF1058_RS15330 +0.4 2.3 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS09730 +0.4 2.1 LicD family protein compare
HMPREF1058_RS05195 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS07550 +0.4 1.3 alpha/beta hydrolase compare
HMPREF1058_RS13415 +0.4 1.4 FecR family protein compare
HMPREF1058_RS17185 +0.4 1.4 manganese efflux pump compare
HMPREF1058_RS14190 +0.4 2.3 hypothetical protein compare
HMPREF1058_RS04005 +0.4 2.5 patatin-like phospholipase family protein compare
HMPREF1058_RS16185 +0.4 1.9 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1058_RS00665 +0.4 1.9 AraC family transcriptional regulator compare
HMPREF1058_RS10710 +0.4 2.6 DUF3108 domain-containing protein compare
HMPREF1058_RS0119575 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS07315 +0.4 1.8 TIGR02757 family protein compare
HMPREF1058_RS05435 +0.4 1.3 MarC family protein compare
HMPREF1058_RS16225 +0.4 0.7 DUF4250 domain-containing protein compare
HMPREF1058_RS02475 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS16205 +0.4 1.8 DUF3987 domain-containing protein compare
HMPREF1058_RS16705 +0.4 2.3 xanthine phosphoribosyltransferase compare
HMPREF1058_RS21600 +0.4 1.5 histidine kinase compare
HMPREF1058_RS14880 +0.4 2.1 radical SAM protein compare
HMPREF1058_RS04955 +0.4 1.2 site-specific integrase compare
HMPREF1058_RS10260 +0.4 1.6 ADP-ribosylglycohydrolase family protein compare
HMPREF1058_RS04420 +0.4 1.7 PorT family protein compare
HMPREF1058_RS14670 +0.4 1.5 nitroreductase family protein compare
HMPREF1058_RS11445 +0.4 2.3 PorT family protein compare
HMPREF1058_RS21680 +0.4 1.5 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS01370 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS10190 +0.4 1.5 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS09860 +0.4 0.9 DUF3408 domain-containing protein compare
HMPREF1058_RS07900 +0.4 1.1 DUF1573 domain-containing protein compare
HMPREF1058_RS03345 +0.3 2.0 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS18980 +0.3 1.6 SGNH/GDSL hydrolase family protein compare
HMPREF1058_RS01770 +0.3 1.9 porin compare
HMPREF1058_RS08520 +0.3 0.8 DUF59 domain-containing protein compare
HMPREF1058_RS01780 +0.3 1.8 3'-5' exonuclease compare
HMPREF1058_RS13080 +0.3 1.3 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS17645 +0.3 2.4 DUF5113 domain-containing protein compare
HMPREF1058_RS10200 +0.3 0.9 hypothetical protein compare
HMPREF1058_RS03180 +0.3 1.7 V-type ATP synthase subunit A compare
HMPREF1058_RS0119730 +0.3 1.8 response regulator transcription factor compare
HMPREF1058_RS11475 +0.3 1.5 chloramphenicol acetyltransferase compare
HMPREF1058_RS05590 +0.3 1.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05020 +0.3 1.6 twin-arginine translocase subunit TatC compare
HMPREF1058_RS10395 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS06615 +0.3 1.0 GDP-mannose 4,6-dehydratase compare
HMPREF1058_RS02020 +0.3 1.0 hypothetical protein compare
HMPREF1058_RS16155 +0.3 2.1 polysaccharide pyruvyl transferase family protein compare
HMPREF1058_RS05825 +0.3 1.8 thiamine diphosphokinase compare
HMPREF1058_RS03610 +0.3 2.1 glycosyltransferase family 4 protein compare
HMPREF1058_RS14085 +0.3 2.1 5'/3'-nucleotidase SurE compare
HMPREF1058_RS09090 +0.3 2.3 S9 family peptidase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Mucin from porcine stomach,Type II across organisms