Experiment set10S185 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM B-Alanine

200 most important genes:

  gene name fitness t score description  
MMP_RS02175 -2.4 -0.9 DUF1611 domain-containing protein compare
MMP_RS07860 -1.9 -1.0 hypothetical protein compare
MMP_RS01650 -1.9 -1.0 sulfurtransferase TusA family protein compare
MMP_RS05355 -1.9 -0.7 hypothetical protein compare
MMP_RS00675 -1.9 -1.0 nitroreductase family protein compare
MMP_RS08370 -1.8 -0.7 cation:proton antiporter subunit C compare
MMP_RS05835 -1.8 -0.9 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS00520 -1.7 -1.5 RNA polymerase Rpb4 family protein compare
MMP_RS01075 -1.6 -1.8 hypothetical protein compare
MMP_RS02480 -1.6 -1.6 hypothetical protein compare
MMP_RS03960 -1.5 -1.3 hypothetical protein compare
MMP_RS01195 -1.3 -1.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS00130 -1.3 -0.9 nickel-responsive transcriptional regulator NikR compare
MMP_RS02280 -1.2 -0.6 DUF211 domain-containing protein compare
MMP_RS00320 -1.2 -1.2 class I SAM-dependent methyltransferase compare
MMP_RS00570 -1.2 -2.4 protein-L-isoaspartate O-methyltransferase compare
MMP_RS07545 -1.1 -0.6 HTH domain-containing protein compare
MMP_RS01765 -1.1 -3.8 HIT family protein compare
MMP_RS07725 -1.1 -2.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS06155 -1.1 -1.7 DUF4186 domain-containing protein compare
MMP_RS07005 -1.1 -0.4 4Fe-4S binding protein compare
MMP_RS06175 -1.1 -3.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS02010 -1.0 -3.8 PHP domain-containing protein compare
MMP_RS03385 -1.0 -0.8 cation diffusion facilitator family transporter compare
MMP_RS05865 -1.0 -1.4 hypothetical protein compare
MMP_RS07575 -1.0 -2.0 RNA ligase partner protein compare
MMP_RS06585 -1.0 -1.2 DMT family protein compare
MMP_RS01675 -1.0 -1.0 hypothetical protein compare
MMP_RS06625 -1.0 -1.1 DNA primase compare
MMP_RS00730 -0.9 -2.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS04015 -0.9 -1.8 hypothetical protein compare
MMP_RS07840 -0.8 -1.9 ribonuclease III compare
MMP_RS09025 -0.8 -0.7 hypothetical protein compare
MMP_RS08225 -0.8 -4.0 RimK family alpha-L-glutamate ligase compare
MMP_RS07365 -0.8 -4.1 2-phosphoglycerate kinase compare
MMP_RS01725 -0.8 -2.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS04195 -0.8 -1.8 flavodoxin compare
MMP_RS07560 -0.8 -2.6 prefoldin subunit alpha compare
MMP_RS00400 -0.8 -2.6 tributyrin esterase compare
MMP_RS07415 -0.8 -2.6 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS01175 -0.8 -2.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS02900 -0.8 -0.3 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04145 -0.8 -1.0 hypothetical protein compare
MMP_RS05920 -0.7 -0.3 50S ribosomal protein L37e compare
MMP_RS08675 -0.7 -1.3 class III signal peptide-containing protein compare
MMP_RS07845 -0.7 -1.3 LL-diaminopimelate aminotransferase compare
MMP_RS07350 -0.7 -0.8 preprotein translocase subunit Sec61beta compare
MMP_RS00850 -0.7 -2.0 TIGR01177 family methyltransferase compare
MMP_RS01335 -0.7 -1.2 prefoldin subunit beta compare
MMP_RS02475 -0.7 -1.1 hypothetical protein compare
MMP_RS05815 -0.7 -1.1 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06285 -0.7 -1.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02915 -0.6 -1.8 amino acid ABC transporter permease compare
MMP_RS08100 -0.6 -1.8 8-amino-7-oxononanoate synthase compare
MMP_RS01380 -0.6 -2.0 PHP domain-containing protein compare
MMP_RS02235 -0.6 -2.8 CBS domain-containing protein compare
MMP_RS04440 -0.6 -2.4 nitrogenase iron protein compare
MMP_RS03420 -0.6 -1.4 acetolactate synthase small subunit compare
MMP_RS06735 -0.6 -1.1 class I SAM-dependent rRNA methyltransferase compare
MMP_RS02690 -0.6 -2.4 FmdE family protein compare
MMP_RS03535 -0.6 -1.1 helix-turn-helix transcriptional regulator compare
MMP_RS07700 -0.6 -3.1 DUF1188 domain-containing protein compare
MMP_RS08570 -0.6 -2.4 coenzyme F420-0:L-glutamate ligase compare
MMP_RS08165 -0.6 -0.5 phosphoglycerate dehydrogenase compare
MMP_RS07635 -0.6 -2.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01095 -0.6 -1.6 iron ABC transporter permease compare
MMP_RS02965 -0.6 -1.3 carboxymuconolactone decarboxylase family protein compare
MMP_RS08610 -0.6 -3.1 flagellar protein F compare
MMP_RS05925 -0.6 -1.1 small nuclear ribonucleoprotein compare
MMP_RS01430 -0.6 -2.0 mechanosensitive ion channel family protein compare
MMP_RS03080 -0.6 -1.4 universal stress protein compare
MMP_RS01085 -0.6 -0.9 hypothetical protein compare
MMP_RS08995 -0.6 -0.6 hypothetical protein compare
MMP_RS00555 -0.6 -2.6 MFS transporter compare
MMP_RS05985 -0.6 -1.3 hypothetical protein compare
MMP_RS02800 -0.6 -3.1 nucleotidyltransferase domain-containing protein compare
MMP_RS02675 -0.5 -0.8 hypothetical protein compare
MMP_RS06005 -0.5 -1.4 heavy-metal-associated domain-containing protein compare
MMP_RS02730 -0.5 -2.2 ModD protein compare
MMP_RS00540 -0.5 -1.5 PLP-dependent aminotransferase family protein compare
MMP_RS01880 -0.5 -2.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS02685 -0.5 -3.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS03020 -0.5 -1.9 peptidylprolyl isomerase compare
MMP_RS05965 -0.5 -1.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS06035 -0.5 -2.8 glycosyltransferase family 2 protein compare
MMP_RS03315 -0.5 -0.3 ferrous iron transport protein A compare
MMP_RS02840 -0.5 -2.6 DUF123 domain-containing protein compare
MMP_RS08350 -0.5 -0.4 hypothetical protein compare
MMP_RS04255 -0.5 -2.0 coenzyme F420 hydrogenase subunit beta compare
MMP_RS02815 -0.5 -0.7 hypothetical protein compare
MMP_RS03965 -0.5 -1.0 hypothetical protein compare
MMP_RS05665 -0.5 -1.4 phosphate ABC transporter permease subunit PstC compare
MMP_RS05310 -0.5 -2.0 hypothetical protein compare
MMP_RS02045 -0.5 -0.6 tRNA-Met compare
MMP_RS08265 -0.5 -1.4 rubrerythrin compare
MMP_RS01310 -0.5 -3.3 hypothetical protein compare
MMP_RS01320 -0.5 -1.1 hypothetical protein compare
MMP_RS03015 -0.5 -2.0 GTP 3' 8-cyclase MoaA compare
MMP_RS06050 -0.5 -2.5 ZIP family metal transporter compare
MMP_RS04710 -0.5 -0.7 hypothetical protein compare
MMP_RS06865 -0.5 -1.1 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02610 -0.5 -1.8 DUF2162 domain-containing protein compare
MMP_RS02700 -0.5 -1.7 formylmethanofuran dehydrogenase subunit C compare
MMP_RS01450 -0.5 -2.7 tRNA pseudouridine(38-40) synthase TruA compare
MMP_RS01080 -0.5 -1.5 DUF2202 domain-containing protein compare
MMP_RS05460 -0.5 -2.3 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS04360 -0.4 -0.9 hypothetical protein compare
MMP_RS01660 -0.4 -0.9 hypothetical protein compare
MMP_RS06310 -0.4 -1.3 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS04430 -0.4 -1.9 DUF1847 domain-containing protein compare
MMP_RS06610 -0.4 -0.9 DUF2334 domain-containing protein compare
MMP_RS05455 -0.4 -1.7 DUF167 domain-containing protein compare
MMP_RS06915 -0.4 -1.9 metallophosphoesterase compare
MMP_RS02540 -0.4 -1.5 DUF2283 domain-containing protein compare
MMP_RS02735 -0.4 -1.4 MBL fold metallo-hydrolase compare
MMP_RS08390 -0.4 -1.6 DUF5400 domain-containing protein compare
MMP_RS01445 -0.4 -1.5 hypothetical protein compare
MMP_RS02830 -0.4 -1.7 DUF432 domain-containing protein compare
MMP_RS08615 -0.4 -0.7 flagellar protein G compare
MMP_RS06760 -0.4 -0.8 hypothetical protein compare
MMP_RS02550 -0.4 -1.4 helix-turn-helix transcriptional regulator compare
MMP_RS01635 -0.4 -2.1 thiamine pyrophosphate-dependent enzyme compare
MMP_RS05530 -0.4 -2.2 signal peptide peptidase SppA compare
MMP_RS08195 -0.4 -1.5 hypothetical protein compare
MMP_RS04465 -0.4 -2.6 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04190 -0.4 -2.3 hypothetical protein compare
MMP_RS06115 -0.4 -2.3 class II aldolase/adducin family protein compare
MMP_RS02595 -0.4 -0.5 putative zinc-binding protein compare
MMP_RS03445 -0.4 -0.3 methanogenesis marker 17 protein compare
MMP_RS01575 -0.4 -1.1 aldolase compare
MMP_RS03125 -0.4 -1.2 cell division ATPase MinD compare
MMP_RS01500 -0.4 -0.7 CBS domain-containing protein compare
MMP_RS02960 -0.4 -2.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS03345 -0.4 -2.2 hypothetical protein compare
MMP_RS04455 -0.4 -2.4 nitrogenase subunit alpha compare
MMP_RS02510 -0.4 -1.8 site-specific integrase compare
MMP_RS01665 -0.4 -1.1 DUF2111 domain-containing protein compare
MMP_RS03985 -0.4 -2.0 hypothetical protein compare
MMP_RS07885 -0.4 -0.9 tripartite tricarboxylate transporter permease compare
MMP_RS06700 -0.4 -2.2 hypothetical protein compare
MMP_RS05050 -0.4 -1.9 substrate-binding domain-containing protein compare
MMP_RS08455 -0.4 -0.7 multiprotein bridging factor aMBF1 compare
MMP_RS07750 -0.4 -0.9 DUF357 domain-containing protein compare
MMP_RS06655 -0.4 -1.8 glycoside hydrolase family 15 protein compare
MMP_RS00125 -0.4 -0.4 DUF2798 domain-containing protein compare
MMP_RS08990 -0.4 -1.2 hypothetical protein compare
MMP_RS08855 -0.3 -1.7 hypothetical protein compare
MMP_RS08090 -0.3 -0.9 hypothetical protein compare
MMP_RS00640 -0.3 -1.7 ABC transporter substrate-binding protein compare
MMP_RS08885 -0.3 -1.9 tetratricopeptide repeat protein compare
MMP_RS08285 -0.3 -1.8 serine/threonine protein kinase compare
MMP_RS00960 -0.3 -1.0 iron export ABC transporter permease subunit FetB compare
MMP_RS05950 -0.3 -1.5 nickel-dependent hydrogenase large subunit compare
MMP_RS07895 -0.3 -1.0 cytochrome c compare
MMP_RS00620 -0.3 -1.7 4Fe-4S binding protein compare
MMP_RS04450 -0.3 -1.7 P-II family nitrogen regulator compare
MMP_RS02355 -0.3 -0.7 30S ribosomal protein S27ae compare
MMP_RS01745 -0.3 -0.9 AMP phosphorylase compare
MMP_RS08555 -0.3 -1.0 hypothetical protein compare
MMP_RS02715 -0.3 -1.4 molybdopterin molybdotransferase MoeA compare
MMP_RS01545 -0.3 -0.3 CBS domain-containing protein compare
MMP_RS01440 -0.3 -1.0 NAAT family transporter compare
MMP_RS01805 -0.3 -0.7 NUDIX hydrolase compare
MMP_RS00900 -0.3 -0.4 50S ribosomal protein L39e compare
MMP_RS00295 -0.3 -0.6 gamma carbonic anhydrase family protein compare
MMP_RS06965 -0.3 -1.3 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS01495 -0.3 -1.8 TraB/GumN family protein compare
MMP_RS07815 -0.3 -0.3 DUF2120 domain-containing protein compare
MMP_RS04265 -0.3 -0.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS01465 -0.3 -0.9 hypothetical protein compare
MMP_RS01830 -0.3 -0.4 tRNA-Val compare
MMP_RS00530 -0.3 -1.1 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS00545 -0.3 -0.9 XRE family transcriptional regulator compare
MMP_RS04850 -0.3 -2.0 UPF0254 family protein compare
MMP_RS05515 -0.3 -1.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01600 -0.3 -0.9 50S ribosomal protein L15e compare
MMP_RS00905 -0.3 -1.1 phenylacetate--CoA ligase compare
MMP_RS02265 -0.3 -0.6 nitroreductase family protein compare
MMP_RS08175 -0.3 -1.0 7-cyano-7-deazaguanine synthase compare
MMP_RS08260 -0.3 -1.1 DUF99 family protein compare
MMP_RS06900 -0.3 -0.7 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02530 -0.3 -1.5 type II toxin-antitoxin system mRNA interferase toxin RelE/StbE family compare
MMP_RS05695 -0.3 -1.3 phospholipase D-like domain-containing protein compare
MMP_RS05970 -0.3 -1.0 class II SORL domain-containing protein compare
MMP_RS08600 -0.3 -0.5 flagellar protein D compare
MMP_RS02935 -0.3 -1.0 A24 family peptidase compare
MMP_RS04695 -0.3 -0.9 selenide water dikinase SelD compare
MMP_RS00655 -0.3 -0.5 hypothetical protein compare
MMP_RS03120 -0.3 -0.4 hypothetical protein compare
MMP_RS04675 -0.3 -1.4 selenouridine synthase SelU-like subunit compare
MMP_RS01855 -0.3 -1.2 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS04460 -0.3 -1.6 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS01690 -0.3 -1.2 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04125 -0.3 -1.2 TetR/AcrR family transcriptional regulator compare
MMP_RS08355 -0.3 -1.2 Na(+)/H(+) antiporter subunit B compare
MMP_RS09035 -0.3 -1.0 hypothetical protein compare
MMP_RS03820 -0.3 -1.3 EamA family transporter compare
MMP_RS04390 -0.3 -1.5 hypothetical protein compare
MMP_RS02880 -0.3 -1.5 AmmeMemoRadiSam system radical SAM enzyme compare
MMP_RS04470 -0.3 -1.7 nitrogenase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Beta-alanine across organisms